LOC122355711 (rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117)


Basic Information

Item Value
gene id LOC122355711
gene name rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 3089629 ~ 3103315 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU126462
ACCGGAACAAGAGGAAGAAGGAAGAGAAGAAGCAGGAGTGTTCGGAGAGTTATGTCTTAAGTCCTGATACGGAGCAGATGATCGAGCGGGTAAGGAAGGCCCATCAGGACACCTTCCCCTCCCTGTGTCAGCTGGGCAAATACACCACGAACAACAGTGCAGACCACAGGGTCGCTCTGGACGTTGACCTGTGGGACAAGTTCAGTGAACTCTCCAccaaatgcatcattaaaacgGTGGAGTTCGCCAAGCAGCTGCCCGGCTTCACCACGCTCACTATCGCAGATCAGATCACCCTGTTAAAGGCCGCCTGTCTCGACATCCTGATTCTGCGGATATGTACGCGCTACACACCGGATCAGGACACCATGACGTTTTCAGACGGTCTGACACTGAACCGCACGCAGATGCACAACGCTGGCTTCGGTCCACTGACGGATCTGGTTTTCGCTTTCGCCAACCAGCTCCTGCCTCTGGAGATGGACGATGCAGAGACGGGGCTGCTCAGCGCCATCTGTCTGCTGTGTGGAGATCGGCAGGATCTGGAGCAGTCGGATAAGGTAGACGTGCTTCAGGAGCCGCTGCTGGAGGCTCTCAAGATCTACGTGAGGAAGAGGAGGCCTCATAAACCACACATGTTCCCCAAAATGCTGATGAAGATCACAGACCTGAGGAGCATCAGCGCTAAAGgAGCCGAGCGAGTAATAACGCTGAAAATGGAGATCCCCGGCTCCATGCCTCCGCTCATTCAGGAGATGCTGGAGAATTCAGA
>XM_043254261.1
GCATATATTAGGCAACTCAATCTTTCATTGTGTAGGAATGAACTAGTAGGAAATGAGCTGCACGGAGGCAGGAGACGAAATCCGTCATTGCGCGTTTAAACGcgatatatatttacaaattcatCCCTCATTATAGAGGAGCGCTGTCGCTAACCGGAACGGGACACAACACCTAGCGGAACCGTGTTTATATCCGTTTAGCGTTCGTTTTTACTCTGAAAATTGCCAGTGAGGATCGGGATGGATCGCGTGTCTAGAGACTGTGTGGAAACGGAGAGAGATCCGCGGCTGCCCAGAGTTGATGGAGTTTCTGTGAACAAATGAAGGACGACCCGATTgaaattttattcttttattcttcaGCGAAATAAAGTGCATGATGTTTGACTGTATGGATGTGTTATCGGGACACATGCTGGAGTTTTACTCGTCCAGTTCCTCGTCATGTATGTTACAGGAGAAAGCGCTCAAAGCGTGCTTCAGCTGGCAACACCGACGCACCAAACACTcaaTCGAGACCCAGAGTACGAGCTCAGAGGAGATTGTCCCGAGCCCACCGTCTCCGCCTCCTCCTCCCCGCGTCTACAAGCCCTGCTTTGTGTGTCAGGACAAATCTTCAGGGTACCACTATGGCGTCAGTGCCTGTGAGGGCTGCAAGGGCTTCTTCAGGCGGAGTATCCAGAAGAACATGGTCTACACGTGCCACAGAGAGAAGAACTGCATCATCAACAAAGTCACCCGCAACCGCTGTCAATACTGCCGGCTGCAGAAGTGCCTGGAAGTGGGGATGTCCAAAGAATCTGTGCGGAATGACCGGAACAAGAGGAAGAAGGAAGAGAAGAAGCAGGAGTGTTCGGAGAGTTATGTCTTAAGTCCTGATACGGAGCAGATGATCGAGCGGGTAAGGAAGGCCCATCAGGACACCTTCCCCTCCCTGTGTCAGCTGGGCAAATACACCACGAACAACAGTGCAGACCACAGGGTCGCTCTGGACGTTGACCTGTGGGACAAGTTCAGTGAACTCTCCAccaaatgcatcattaaaacgGTGGAGTTCGCCAAGCAGCTGCCCGGCTTCACCACGCTCACTATCGCAGATCAGATCACCCTGTTAAAGGCCGCCTGTCTCGACATCCTGATTCTGCGGATATGTACGCGCTACACACCGGATCAGGACACCATGACGTTTTCAGACGGTCTGACACTGAACCGCACGCAGATGCACAACGCTGGCTTCGGTCCACTGACGGATCTGGTTTTCGCTTTCGCCAACCAGCTCCTGCCTCTGGAGATGGACGATGCAGAGACGGGGCTGCTCAGCGCCATCTGTCTGCTGTGTGGAGATCGGCAGGATCTGGAGCAGTCGGATAAGGTAGACGTGCTTCAGGAGCCGCTGCTGGAGGCTCTCAAGATCTACGTGAGGAAGAGGAGGCCTCATAAACCACACATGTTCCCCAAAATGCTGATGAAGATCACAGACCTGAGGAGCATCAGCGCTAAAGgAGCCGAGCGAGTAATAACGCTGAAAATGGAGATCCCCGGCTCCATGCCTCCTCATTCAGGAGATGCTGGAGAATTCAGAGGGTCTGGAGGGTGGCGGCGGGGCGAGgggagggggaggaggaggaggaggagcaccACCAGGAAGCTGCAGCCCCAGTTTGTCTCCCAGTTCGGCACACAGCAGCCCCTCGGCTCACTCCCCCTGAGTGTCATCTCCAGACAGGGAGCGAAACGAAACTGGTTCCAAACCAGAAATAAGCCTCAGCCGACCAGCGCCAGAAACCAGATTTCCGGTAGACTTTGACCCGGGCTGACCGGACCCGAACACTTAATCTGGCCGGCTTTCATTAGCTGAAGACCAATCGAGTCACACACAGGTCGAGCCTGCTCAAAACTCACGCTGTCATTAAAACCATTCAGTGACTACCAGAGCCCTGCAGCTTTTCATGTGACGGTGGTCTCCGAAGACGGCAGAACAAACGTCCCGTGTGTGCAGAAGCGGCTCTATACCGCGTCTTCCCAGCTCTGCTCCCATCACACAAACTGTGAAGGCCCAGACAAGCTCTCCCTCTCGTCTGAGGGACGCTTTCTCTTGAGcctgtgacttttattttataaatttcaaTCCCTTAAAAGCAAGCTAAAGGACATTAGGACGTCAAATGTCCGCAAGTCAGGGACATTTTGAACTTTCCAGCTGTTTTGgttctgtttctttgttttcttacaaaaagatatatgaatatatgaaatctatattgacagaaaaatgaGATTTGAATTTTGTGTCTTAGGTGGAATGCAGAACAGTTCTtatcttttctctctcacttttcTCTCAAGAGTTAAACACGGTTATGGTCGACCCACTGTTCCGCTCACTCCCAGACAGTCCCGTTCACGTCACGCACAAGGGCACGTCACGCTAGCACTGAAAATCATGCGATGGGCTTGAAACGCAATTTCGTCCAGTGAGGAAGTGATTTGGAGACGTATTCAGAATGATCAACTTGGCAGATTGATGCAAAGAAATGAAGGATCTCATGTAAACAAGCAGGTTGTGATTCATGGTGATGTGTATGAGATCTCGGAGCGGGAAATGCCTTTGTGTagctttttaatattgtttcttAATTTGctcttcatttttgtatttgtcgGAGATCCCCCACACACAAAGTATtagcagattttaaaataaaaagaggttTCCAAACCTAATGTGTCAAAAATAA

Function

symbol description
rara Enables several functions, including DNA binding activity; nuclear receptor activity; and protein kinase B binding activity. Involved in several processes, including cellular response to estrogen stimulus; regulation of gene expression; and regulation of leukocyte differentiation. Located in several cellular components, including actin cytoskeleton; chromatin; and nuclear lumen. Part of protein-containing complex. Implicated in acute promyelocytic leukemia. Biomarker of mood disorder.

NR:

description
PREDICTED: retinoic acid receptor beta-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08527 RARA, NR1B1; retinoic acid receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU126462 False 772 TUCP 0.55 5 3090785 3092413
XM_043254261.1 True 2738 mRNA 0.50 9 3089629 3103315

Neighbor

gene id symbol gene type direction distance location
LOC122355866 grid1,grid1a,LOC107716022,LOC107654854,LOC106577051 coding downstream 6276 3004429 ~ 3083353 (-)
LOC122355586 LOC107732308,LOC107581964,LOC107692781,LOC107707128,LOC107697371,LOC107587198 coding downstream 211919 2870121 ~ 2877710 (-)
LOC122355585 arid5b,LOC107654064,LOC107593511,LOC107739058,LOC107695542 coding downstream 229629 2849976 ~ 2860000 (-)
LOC122355185 bicc1,bicc1b,LOC107653928,LOC107596591,LOC107746462,LOC107727063,LOC107695510 coding downstream 380700 2704288 ~ 2708929 (-)
slc4a1b slc4a1b,LOC107569191,LOC107684772,LOC107753326,LOC108410807 coding downstream 473342 2605131 ~ 2616287 (-)
LOC122355769 grid1,grid1b,LOC107598047,LOC106577051,LOC106607602 coding upstream 290340 3393655 ~ 3397535 (-)
LOC122355770 LOC107660482,LOC107716480,LOC107678383,LOC107745560,LOC108435041 coding upstream 394557 3497872 ~ 3540155 (-)
c12h10orf88 si:rp71-19m20.1,LOC107716483,LOC107598032 coding upstream 621769 3725084 ~ 3730449 (-)
vps35l zgc:163107,cunh16orf62,cssa28h16orf62,LOC107678404,LOC107716486,LOC107660477 coding upstream 650263 3753578 ~ 3764451 (-)
raraa raraa,rara,LOC107716487,LOC107745620,LOC107571738,LOC107660476,LOC107678286,LOC105935622 coding upstream 663032 3766347 ~ 3881783 (-)
G85342 NA non-coding downstream 52045 2950836 ~ 3037584 (-)
G85257 NA non-coding downstream 142240 2919185 ~ 2947389 (-)
G85250 NA non-coding downstream 219940 2869140 ~ 2869689 (-)
G85235 NA non-coding downstream 297106 2791920 ~ 2792523 (-)
G85216 NA non-coding downstream 409312 2680044 ~ 2680317 (-)
G85355 NA non-coding upstream 53501 3156816 ~ 3159743 (-)
G85372 NA non-coding upstream 270062 3373377 ~ 3374951 (-)
G85389 NA non-coding upstream 512527 3615842 ~ 3721023 (-)
G85435 NA non-coding upstream 857448 3960763 ~ 3961353 (-)
G85487 NA non-coding upstream 1014490 4117805 ~ 4175223 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other downstream 308276 2767908 ~ 2781353 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other downstream 804577 2173988 ~ 2285052 (-)
ank3b ank3b,LOC107654059,LOC107695539 other downstream 1142217 1814083 ~ 1947412 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 2192112 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 2537186 543246 ~ 552443 (-)
G85366 NA other upstream 155216 3258531 ~ 3299688 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other upstream 1114089 4217404 ~ 4230039 (-)
LOC122355775 NA other upstream 1194552 4297867 ~ 4305215 (-)
trnal-uag_49 NA other upstream 1242070 4345385 ~ 4345467 (-)
trnal-uag_50 NA other upstream 1244383 4347698 ~ 4347779 (-)

Expression


Co-expression Network