LOC122355775


Basic Information

Item Value
gene id LOC122355775
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4297867 ~ 4305215 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU126741
CGAAGACTAGACTTTCCCAAAGTCTTTCCTCTCAGTCTCCGACTAGAACATGGACAGGCTTCGGTGGAAACATGCACATCCAGCACCACTTCATTTATGGCACAGAAGATGTCACATTTGTTCCTGAAGTGACGGCTCGTTAGTTCTGCCCTTAAAGGAAATCAACATGGGAAAAGTGCAATCGAAAGCCGGAGATGTTTTCATGGAGGCTGAGTGTATTGGTGAagtggacagaaacaaacagGAGGGAGACACCTTTGAGGGCACAGCAGCGTCCAGCGCAAGACCTGGCGGCCCTAGAGAAACCTCCAGAGGCATCTGCGACAAAAACGGGTGAGAGCGAGGCCTTCAACATCACTGCCGGAAACCAGAAGCGCAGGAGGAGACGCCGCCAGGCTGTCCAATG
>XM_043254333.1
tggagaaatgaaagctgaacatgTAGAACATAAGAATATGGTCCAAAGATTGAACTCTCATGCTCATTTTACCAGGCTGTCCAATGAATAAAGTGCGCTAAAACTGAAGGAGGTGGACTTCATCAAAGGGAGGGTGAATCCTACGAGTTGAGCTTCCTCCACAGCGAGTGAGAGAGCGTGAAGAAAATCTTTACGAAGACTAGACTTTCCCAAAGTCTTTCCTCTCAGTCTCCGACTAGAACATGGACAGGCTTCGGTGGAAACATGCACATCCAGCACCACTTCATTTATGGCACAGAAGATGTCACATTTGTTCCTGAAGTGACGGCTCGTTAGTTCTGCCCTTAAAGGAAATCAACATGGGAAAAGTGCAATCGAAAGCCGGAGATGTTTTCATGGAGGCTGAGTGTATTGGTGAagtggacagaaacaaacagGAGGGAGACACCTTTGAGGGCACAGCAGCGTCCAGCGCAAGACCTGGCGGCCCTAGAGAAACCTCCAGAGGCATCTGCGACAAAAACGGGTGAGAGCGAGGCCTTCAACATCACTGCCGGAAACCAGAAGCGCAGGAGGAGACGCCGCCAGtatggagagaaagagaaggaaaggcaggtgaagagaaaggtgaagaaggagagagggatgaatgcagtaggaaaaaataaagaCGAGGCTGacgaagaaagagagacacttaACCCTGAAAAGAGAAAGGATAGAGGACATGcgctgcagaaaaaaagagagatggagagtctAGAAATTGTGATGGAGGGAGGAAGCGAGCATAGAGAggttggagaaaaaaagaaaaggaagaaaaaactgAAGGAGCAAAAGACTACTGAGCCAACACCACGTCTTGTGGAGGCGAAACCTCTGCTCATTCTAGTCACTCCTCCAGTGAGAGCTTCCTTACTGAAGCCAATAGAAGGAAAACTTCCAGTGCTTTCAGGAGTCTGTGAAGACCTTCTTCCACCCGCTGCTCCCTTCAAGCCCCTGCCTCCAGTGACTAAACTGCCCGCGTGTCCTCAAAATCCAGTTCCTGCACCAGAGGAAGTGTCTCTGCTATGGCCTCCTCTTCAGGTGGATCCTCCCGAGCCGCCGGCAGTTCCTCCACATCCCACTCCAGCACCTGAAGAAGTGTTTTCCCTCCGACGCTCCCACCTGAGTCCTTCCAAACAACTGGTGGTGCCTCCGAGCCCCGCTCCTAAACATGAAGAAGTTGTTGATCTGCAACATTCTTCATCTCAGGTTTATCCTTCCAGTCCCGTGGGACCTCAGCCGCCCACTTCTTCTCAGTTTGAGCCGCCTCCGCAACTCACGCTCATTGACATAGAGGATGACATAGAGTCAGAGTTCGCGGACTACACAGGGAACTATCAGGCCTGGAACTTACCCAAGTCTGAAAGCCCCCGATCGATGGAGGCTGAAATCAGACCGAGGAAGACGATTGCTTGGTTGGAGAGTGACAGCGAGTTGCTAGAGGAAGTGGTAGAGGTCCAGGGATGGCATCTGGATGGCGCCGCACAGAACAAAAAAGAGTTGGAGACCCAGCACAATGCGAAGGTCCAGGAAGTGCCACAGAGCCGAAGAAAAGTGTCCCGCTTTCTGTTCGCCTGGGCAGAAAAGAAGACCAAGGAAAGGGAGgagaagaaaatattgaaagagaaggagcaaagagagaaagagttgctGCTTGAACGCTACAGAAATGATCCAAAACTGAAGCACTTGTTGTTTAATAAGCACAACCGCCACTACTGCTCCGGATGA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126741 False 406 lncRNA 0.52 4 4297867 4305022
XM_043254333.1 True 1779 mRNA 0.50 5 4299048 4305215

Neighbor

gene id symbol gene type direction distance location
LOC122355129 LOC107560557,LOC107753319,LOC107735415,LOC107694068 coding downstream 60638 4232549 ~ 4237229 (-)
dnajc9 dnajc9,LOC107694081,LOC107684784,LOC107751706,LOC107753312 coding downstream 126945 4167639 ~ 4170922 (-)
p4ha1a p4ha1a,LOC107684765,LOC107753313,LOC107751705,LOC107560551 coding downstream 143992 4139060 ~ 4153875 (-)
ppp1r9bb ppp1r9bb,LOC107741705,LOC107684769,LOC107675672,LOC107713069,LOC107598037,LOC107576248 coding downstream 190623 4088710 ~ 4107244 (-)
trnal-uag_48 NA coding downstream 217685 4080101 ~ 4080182 (-)
LOC122355389 grid1b,grid1,LOC106578986,LOC106589364 coding upstream 624598 4929813 ~ 5055115 (-)
ccser2b LOC107716476,LOC107653247,LOC107727960,LOC107569472,LOC107674460 coding upstream 975166 5280381 ~ 5330233 (-)
pelo pelo,LOC107653258,LOC107674509 coding upstream 1055149 5360364 ~ 5367143 (-)
emc9 emc9,LOC107716469,LOC107551848,LOC107674563,LOC107727956,LOC107653261 coding upstream 1110684 5415899 ~ 5419866 (-)
ghdc ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004 coding upstream 1172307 5477522 ~ 5486280 (-)
G85545 NA non-coding downstream 12932 4275337 ~ 4284935 (-)
G85541 NA non-coding downstream 28251 4268003 ~ 4269616 (-)
G85515 NA non-coding downstream 109530 4183582 ~ 4188337 (-)
G85511 NA non-coding downstream 121601 4175990 ~ 4176266 (-)
G85487 NA non-coding downstream 122644 4117805 ~ 4175223 (-)
G85551 NA non-coding upstream 6238 4311453 ~ 4311904 (-)
G85553 NA non-coding upstream 7364 4312579 ~ 4313048 (-)
G85569 NA non-coding upstream 106125 4411340 ~ 4412200 (-)
G85572 NA non-coding upstream 147540 4452755 ~ 4453276 (-)
G85868 NA non-coding upstream 1422089 5727304 ~ 5731090 (-)
kcnh6b LOC107684759,LOC107753307,LOC107573422 other downstream 67828 4217404 ~ 4230039 (-)
G85366 NA other downstream 998179 3258531 ~ 3299688 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other downstream 1194552 3089629 ~ 3103315 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other downstream 1516514 2767908 ~ 2781353 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other downstream 2012815 2173988 ~ 2285052 (-)
trnal-uag_49 NA other upstream 40170 4345385 ~ 4345467 (-)
trnal-uag_50 NA other upstream 42483 4347698 ~ 4347779 (-)
trnal-aag_58 NA other upstream 42647 4347862 ~ 4347942 (-)
trnal-uag_51 NA other upstream 43650 4348865 ~ 4348946 (-)
trnal-uag_52 NA other upstream 44805 4350020 ~ 4350101 (-)

Expression


Co-expression Network