LOC122355055 (LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862)


Basic Information

Item Value
gene id LOC122355055
gene name LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4412573 ~ 4416897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU126762
ATGAGTTAGACTCTGATGATtttgaggatgatgatgatgatgatgatgatgaagtgcAGAACGTCGAGTCTCAGGAGCAGGCAGGTGCCGAGGCGCTGGACAATCTGAGGAAATACATGGATGAAATGGACCAGGAACTGCAAAGCACAAATATTGGCAAAAGCTTTACACAGAACAACAGAGCCAGTAATCAAGCAGCTGCATCTAAAAGCTCATCAGCCGCCTCAATGTCAGATCTTGTTGAGGAAGAAATCCAGCCGCTTGATGTGGACCTCAACCTGGTTTCAAATTTACTGGAGTCTCTCTCTTCTCAGGCTGGCCTTGCTGGGCCTGCTTCTAACCTACTGCAGAGTCTGGGCATCCACATCCCACCTGACACAGATCAGTCCTGATAAGTCAAAGTAAGGTTGAAAAACCAACTCGCAGAGACTTATCACGCACTTATCGCTCACTCAGTGTTCCTTCACCTAGTACACATCAGCTGTTCCTCTATCAGGTGGCTATATTTATGGTCTTCTGCCCCACACCCATTACTGAACTGTGAATTATTACATCCTAACGTTGGCATTTCCTTCAACAGAGCActtcccttaaaaaaaaaacaacttagaGAGAATGTATCCTCTTAGATGTTGCTCTCCTTTAAATGTTAC
>XM_043253007.1
GAGGACTTGCATGCTTAACTACGACACTTCCGGGGCGTTTAAGGAAAATACCGCGAGCTTAAGTTCCAAAACATGTTAAGGTGTCCACATGACCGACATTATCACGCGTTTTCTGATCAAGCGATCGCTAAATAAAACCCGACAGCTTTCAGGTTATAATGAGCCATGaatatggattttttaaaaagacctTCTATCCCTGAAGACGCTGTCCAGTATCAGCTTTTTCTGGTTCACCCTGACCAATCAGACGAAGAAGCCAATGAAAGATCCCTCCAGGAGATCCTGCGAAACATCGTCGCTGAGATCGCCCCTCTTCTGGTGCAGTACATCTGGCAACATCAAGCCTTCAACCTAAGATACCACCCCGAGAAAGGAGATGTGCCTGCGCACCTGGGCGGCGTTACCCAGTTCGGTGATAATGTGGAGGACGAATGGTTCATCGTTTACCTGCTCAAACACATCACACGCACTTTTAGTGATGTAGCCGCTGTTCTCTACGATAACGATGGACAGTTTATCCTGATTGAAGCAGCCGAACACCTGCCAAAGTGGCTGGACCCTGACAGCAGTGAAAACAGGGTGTTCCTGTACCATGGTGAGCTTCATATATTACCCAGGTGCACGCGTGCTGGAGAGGTTGGCTGGCCCAGAGACTCGGTGCCTGCCGTGGGTCAGGCTCTAGAGGTGCTGCGTTCACACGCTGAGAGCTGTTTAGCCAAACCACCCATACGCTCCGCTCTAGCCAGGAGGCTGAACGGTTATCCAGATAAAATCCAGCAGAATTTCCACCGCGCTCACTGTTACGTGCCCGCGGGCATTGCCGCGGTGTTGTCTCGGAGACCTGACCTTATAGCCCCCGCTGTGTCTGCTTTCTACCTGCGCGACCCTGTTGACCTCCAGGCCTGTCGAACTTTCCACGCATTTCCTTCAGACACTAGAGTTATGACATCAGTAAAGTTTACTCGCTGCTTGTACGCACAGCTGCAGCAACAGAGTTTTGTTCCGGATCGGAGGAGCGGCTTCACGCTTCCCGCCCGCTCTCATCCCCAACACAGAGCTCACGAGCTTGGAATGAAACTGGTGACCCATGGCTTTGAAATCCTTTGCTCTAAGAGTGGACAGTCTTCATCAGAGAAAGAGGCTCCAGTCAGCAGTAACCCACTATGGAGAGGCTTTGTAGATAGTCTCAAAAAGAACGGCTACTTTAAGAGTGAACTAGAAGGATCCATTCGATACAAAGACCTAATGACATCAGCAGAGAGTTTCTTCAGACAGTCTATAACCAGCACTCACCGGCCTGACATTCAGAATCCTGGTCAAGAGGTGCTAAAAGTCTTGGAGGAAGCCTCTTACAGTTTGGAAGAGCTAAAAAATCAAGAGGCACATCTACCAGCAGAGGACAGTGATTCGTGGTTAGACATCTCCCCTCAGGAGCTGGAGAGGCTTCTTGAGGAGAGGGGAGGTCGCGGTGAGCAATGCCTCTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGCAGTAACCAGCGCACTTGATAGACTGCTGGGAAGTAAGGATGATGAGTTAGACTCTGATGATtttgaggatgatgatgatgatgatgatgatgaagtgcAGAACGTCGAGTCTCAGGAGCAGGCAGGTGCCGAGGCGCTGGACAATCTGAGGAAATACATGGATGAAATGGACCAGGAACTGCAAAGCACAAATATTGGCAAAAGCTTTACACAGAACAACAGAGCCAGTAATCAAGCAGCTGCATCTAAAAGCTCATCAGCCGCCTCAATGTCAGATCTTGTTGAGGAAGAAATCCAGCCGCTTGATGTGGACCTCAACCTGGTTTCAAATTTACTGGAGTCTCTCTCTTCTCAGGCTGGCCTTGCTGGGCCTGCTTCTAACCTACTGCAGAGTCTGGGCATCCACATCCCACCTGACACAGATCAGTCCTGATAAGTCAAAGTAAGGTTGAAAAACCAACTCGCAGAGACTTATCACGCACTTATCGCTCACTCAGTGTTCCTTCACCTAGTACACATCAGCTGTTCCTCTATCAGGTGGCTATATTTATGGTCTTCTGCCCCACACCCATTACTGAACTGTGAATTATTACATCCTAACGTTGGCATTTCCTTCAACAGAGCActtcccttaaaaaaaaaacaacttagaGAGAATGTATCCTCTTAGATGTTGCTCTCCTTTAAATGTTACAGTACTATATCTTTTTGAATAAAGATAATATTTTCTGAGATGTTCCATTAA

Function

NR:

description
PREDICTED: protein ecdysoneless homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU126762 False 653 lncRNA 0.45 2 4412624 4413362
XM_043253007.1 True 2367 mRNA 0.46 13 4412573 4416897

Neighbor

gene id symbol gene type direction distance location
LOC122355129 LOC107560557,LOC107753319,LOC107735415,LOC107694068 coding downstream 175344 4232549 ~ 4237229 (-)
dnajc9 dnajc9,LOC107694081,LOC107684784,LOC107751706,LOC107753312 coding downstream 241651 4167639 ~ 4170922 (-)
p4ha1a p4ha1a,LOC107684765,LOC107753313,LOC107751705,LOC107560551 coding downstream 258698 4139060 ~ 4153875 (-)
ppp1r9bb ppp1r9bb,LOC107741705,LOC107684769,LOC107675672,LOC107713069,LOC107598037,LOC107576248 coding downstream 305329 4088710 ~ 4107244 (-)
trnal-uag_48 NA coding downstream 332391 4080101 ~ 4080182 (-)
LOC122355389 grid1b,grid1,LOC106578986,LOC106589364 coding upstream 512916 4929813 ~ 5055115 (-)
ccser2b LOC107716476,LOC107653247,LOC107727960,LOC107569472,LOC107674460 coding upstream 863484 5280381 ~ 5330233 (-)
pelo pelo,LOC107653258,LOC107674509 coding upstream 943467 5360364 ~ 5367143 (-)
emc9 emc9,LOC107716469,LOC107551848,LOC107674563,LOC107727956,LOC107653261 coding upstream 999002 5415899 ~ 5419866 (-)
ghdc ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004 coding upstream 1060625 5477522 ~ 5486280 (-)
G85569 NA non-coding downstream 373 4411340 ~ 4412200 (-)
G85553 NA non-coding downstream 99525 4312579 ~ 4313048 (-)
G85551 NA non-coding downstream 100669 4311453 ~ 4311904 (-)
G85545 NA non-coding downstream 127638 4275337 ~ 4284935 (-)
G85541 NA non-coding downstream 142957 4268003 ~ 4269616 (-)
G85572 NA non-coding upstream 35858 4452755 ~ 4453276 (-)
G85868 NA non-coding upstream 1310407 5727304 ~ 5731090 (-)
G85889 tgfb1i1 non-coding upstream 1393760 5810657 ~ 5814446 (-)
G85891 NA non-coding upstream 1403452 5820349 ~ 5821178 (-)
G85892 NA non-coding upstream 1420475 5837372 ~ 5837674 (-)
trnal-uag_71 NA other downstream 16080 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 19418 4393074 ~ 4393155 (-)
trnal-uag_70 NA other downstream 20737 4391754 ~ 4391836 (-)
trnal-aag_71 NA other downstream 22886 4389600 ~ 4389687 (-)
trnal-uag_69 NA other downstream 23045 4389446 ~ 4389528 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other upstream 905581 5322478 ~ 5396912 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 1006187 5423084 ~ 5426511 (-)
G85925 NA other upstream 1568092 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 1574016 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 1634271 6051168 ~ 6078068 (-)

Expression


Co-expression Network