G85572


Basic Information

Item Value
gene id G85572
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4452755 ~ 4453276 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU126767
ccaaacccctgacactgcatgcccgttgtacgtggcccctcagccggtggtggaggcatccgtgaaaccacagcatacctggagaccttctccaggggcactccggcccgaaggaacgagaggtctgaccacggggtgaaggtttggcggcaggccggtgttatttgaacccggtgagtgccactttgccacgcccacctcgggactcgatcgtgtagccaatgttgaagcggtctcatatggattagtcccagcggcatcactgtggccgcggctgccatatgccccaggagcctctgaaaatatttcagtgggaccgccatcctgctcttgaacatattgaagcagttcaacaccgaattggcacgctcctctgtgaggtgtgccatctgatcgatcgaatccagctccatcccaagaaaagagatcctctgcgttggacagagtttgctcttctctggttgacctgaaaccccaactggctgaggtgctgtagcaccagatccctgtgttcgcacaact

Function

GO:

id name namespace
GO:0050900 leukocyte migration biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU126767 True 522 lncRNA 0.57 1 4452755 4453276

Neighbor

gene id symbol gene type direction distance location
LOC122355129 LOC107560557,LOC107753319,LOC107735415,LOC107694068 coding downstream 215526 4232549 ~ 4237229 (-)
dnajc9 dnajc9,LOC107694081,LOC107684784,LOC107751706,LOC107753312 coding downstream 281833 4167639 ~ 4170922 (-)
p4ha1a p4ha1a,LOC107684765,LOC107753313,LOC107751705,LOC107560551 coding downstream 298880 4139060 ~ 4153875 (-)
ppp1r9bb ppp1r9bb,LOC107741705,LOC107684769,LOC107675672,LOC107713069,LOC107598037,LOC107576248 coding downstream 345511 4088710 ~ 4107244 (-)
trnal-uag_48 NA coding downstream 372573 4080101 ~ 4080182 (-)
LOC122355389 grid1b,grid1,LOC106578986,LOC106589364 coding upstream 476537 4929813 ~ 5055115 (-)
ccser2b LOC107716476,LOC107653247,LOC107727960,LOC107569472,LOC107674460 coding upstream 827105 5280381 ~ 5330233 (-)
pelo pelo,LOC107653258,LOC107674509 coding upstream 907088 5360364 ~ 5367143 (-)
emc9 emc9,LOC107716469,LOC107551848,LOC107674563,LOC107727956,LOC107653261 coding upstream 962623 5415899 ~ 5419866 (-)
ghdc ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004 coding upstream 1024246 5477522 ~ 5486280 (-)
G85569 NA non-coding downstream 40555 4411340 ~ 4412200 (-)
G85553 NA non-coding downstream 139707 4312579 ~ 4313048 (-)
G85551 NA non-coding downstream 140851 4311453 ~ 4311904 (-)
G85545 NA non-coding downstream 167820 4275337 ~ 4284935 (-)
G85541 NA non-coding downstream 183139 4268003 ~ 4269616 (-)
G85868 NA non-coding upstream 1274028 5727304 ~ 5731090 (-)
G85889 tgfb1i1 non-coding upstream 1357381 5810657 ~ 5814446 (-)
G85891 NA non-coding upstream 1367073 5820349 ~ 5821178 (-)
G85892 NA non-coding upstream 1384096 5837372 ~ 5837674 (-)
G85893 NA non-coding upstream 1385283 5838559 ~ 5838957 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 35858 4412573 ~ 4416897 (-)
trnal-uag_71 NA other downstream 56262 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 59600 4393074 ~ 4393155 (-)
trnal-uag_70 NA other downstream 60919 4391754 ~ 4391836 (-)
trnal-aag_71 NA other downstream 63068 4389600 ~ 4389687 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other upstream 869202 5322478 ~ 5396912 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 969808 5423084 ~ 5426511 (-)
G85925 NA other upstream 1531713 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 1537637 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 1597892 6051168 ~ 6078068 (-)

Expression


Co-expression Network