drosha (drosha,rnasen,LOC107716466,LOC107727962,LOC107556767)


Basic Information

Item Value
gene id drosha
gene name drosha,rnasen,LOC107716466,LOC107727962,LOC107556767
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5426581 ~ 5446719 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU126891
GTAATACTCGAGTCGAGAATGTGGTGGATGTAAAACAGAGTTGTTAAACTGTCCTGTTCAAGACTTCAAGTTCAGATTAGTTGCATCTGTACATAGACTGTTgtagttttgtcttttgttttagtcattttgtcatttattctaGATGGTGAATACAAATCCTCAAAGTGTTTTGTTTGcaattttgaaaacatactAGCATAAAGTACAGTTTCCAACTGTAACTATTTCTAACTGTAACTGTTTCTAACTATTTCCAAACTGACCagaaatgcatctaaaatacttaaatatatagttGTAAATGGACTAATAGAGAGAATACTGCACAGACACAAGACCATTGATTGATAAAATCCAGTGATATCATGATATAGATTTGAAAAATTAGATCAAGGTTCTGATATTAGTGCCAAAGTGACACACCAATGGATGTTATTACGAACTTAATTTCGGttacttaaattaaatcatgcaaatgcattttccaCAGTGACAATCGTTTTACTGTAACATCAGTTTAaatcaacaacaataaaaaagacattcatCCTGGTcagaaaactttaatttaactttaacaaaaatgtataatattgataatattagtgaccaatttgtattatttatttgtatctgtattattaactaaaaatggTGACCATACACAGTCATCTTCtgattatttatctttttagcTTCTTCTTGCTTAAACATACCACGCAGGAAGAAACGTCTCTGTTATGTATGTAACACTCGTTCCCTGATGGTGGGAACGGAGACGTTATTTCGTGATGACAGActgggctccaagcaagacatAACTcctagtgactgacagacaagGAACTGCTCTTCTTTAGTTATAGAATCAGATGTGTTCCTTAATTATCATCTTCAGGTCAATCTGAGACTATAATTTATCATGTCATGAAATATCTGAAAAGGTCATTTTGTACTGAGATGGTTCAtttttagaagtctttgttCCCTCTGTAAGATCTCTTTGGTAATGTACTATAGATGAATTAATAACTAATAGCCCTCAGTTTTGTCTTATGTAAGATAGTAATTCCTTTTAATGGCAGCGTGATTTAATAGACTACCAAATCGTTATGTAAGTGgtaaaattattgttaaaaaagtatatatattccTCATGTAACTTTCAGTACGTTACATGAGGAAAATTGCATTTGCTGAAATGATGGCACAATGTAAAAAATCCTATCTGTATTAATCCCAAGTTTTTGTTAATGAAGTAAACTTTTTGGAATACCACAGGGTTCAGCGTTAAGTCCTTTAACACTGTC
>XM_043254292.1
tctgatttgctgcatCGCACAGCTCGTCGTGAACGAGCTAAAGCGCTGCATCATAAACTGAGCATTTTTATCGCAgtgaacataaaacacaaaaaccgAGTTaccggtttatttatttagcttccAAGTGTTAGCAAAACCTTCTAAAGATGTCTTTCCACACTGGCCGTGGATGCCCGAGGGGAAGACCAGCCGCTCCAGGCCCAATGTATCGGCCTGCTCCTCCACGGTATCACTATGACCCTCCAGCTGCTCCGGGTCCCATCTATAATCCTCAAGGCAGCAGTGGCTACATGCCACCTCATCCTGACTTCATGCCATTCCATTTCCCCGCACCCTCACAGGGCTCTAATGCTCTGCCTCAATGCCCCATACGCCCACCAGTCTTCCCAGAGCCACCCCCTTTTCCTCCACCTGCTCCTCACAGCTCAGACAGCTCTGCTCCAGTTCCAATTCAGAGCTCTTATCCTTACATGATGCCCACTGTCACCCCTCCACCTCTTCCACCTGTGCCACCCTCTGTGCCACCTTCTATGCCTTACCCGCCATCATATCCCATGAGCTATCCTCCACAGCCACAGCTCCCTCCTCCACCGAGCTTCAACCCAGCTTACGTGCAGCCCGGAGGTTCCTTCAAACCTGAACGCTCCCGCCCACCTCTACAATACAAGTCAGACACCTGTTCCCGCTCGCCGGAAAGACTTCGTCACCATGATGACCACCGCCACAGGGGCCACAGCTATGGAGGCTATGGAGGTCGGCATAACCGAGAGTTTGGAGGAGAGAAACGTGACAGAGGGTGCAGTTCAGAGCGCAGGAGGTCAGACAGCCCGCGTTACAAAGCGGACTATGACAGAGGGCGCGTACCGTCAAGACACCGCAGCAGAGAACGTTATCGGCATAGAGATGAGGCCGGTTCACCCCCCTCCGACAGACACAGGAAACACATTCGCAATCGCTCAGGCAGTCGAGAGAGAAAGCGTCGACGTgtggaggaggagaaagagaggagaacaGACAGCACCTCCAGCAGTCGAGAGAGATCGGTGAGCTATAGCAGGACTAGAGATGCAGAGGAGACATCCACTGACAGACACGAGGAGGAGAAAGGAGAGGAGGAGTTACTCAAACCTGCCTGGATCCGCTGTACACATGCTGAGAACTACTACTCCAATGATCCCATGGACCAAGTGGGTGATTCTACAGTCGTGGGAACCAGTAAGTTGAGAGATCTGTATGAGCGCTTTGAGGAAGAGCTTGGTCGGAGACAGGAACGGGCCAAATCCAGTAGACCTAAATGGGAACCACCCAAGACCAAATTGGACCAGGATCAAGATGAGAGCTCCAGCGAATCAGAATGTGATTCTGATGGAGGTGGTAGCAGCTGCTCCAGCAGCTCTGACTCTGAAGTGTTTGATGTAATTGCTGAGATCAAGAGAAAGAAAGCTCATCCTGACCGCCTCCATGAGGAGCTGTGGTACAATGACCCTGGACAGATGAACGATGGGCCGTTATGCAAGTGCAGTGCCAAAGCTAGGCGAACTGGAATCCGACACAGTATTTATCCGGGTGAACAGCCAGTGAAATCATGCCGGCCGATGAGTAACAATGCTGGGAAACTGTTTCATTACAGAATAACTGTGTCCCCACCCACCAACTTTCTAacagaTAGACCCACTGTTATAGAGTATGACGACCACGAGTACCTCTTTGAGGGCTTTTCCTGCTTTTCTCATACACCACTTACTAATATCCCTTTGTGTCGGGTTATTCGCTTCAACATCGATTACACTATCCACTTTATAGAAGAGATGGCACCTGAGAACTACTGCGTTAAAGGCCTGGAAATGTTTTCTTCATACCTCTTCAAAGACATCTTGGAGTTATACGATTGGAATCTCGCAGGTCCTGATGAAAGCGGCCCTTCAGGTTGTCAGAGGTTTCATTTTATGCCACGGTTCGTACGGTTCCTCCCAGATGGAGGAAAGGAGGTGCTGTCTATGCACCAGGTGCTGCTGTATCTACTGCGCAGCAGCACAGCCCTAGTTCCAGAAGAGGAGATCGCCAACATGCTTCAATGGGAGGAGCTAGAGTGGCAGAAATATGCTGAAGAGTGCAAGGGCATGATTGTTACCAACCCTGGCATGAAACCCAGTTCTGTGAGGATTGATCAGTTGGATCGGGAACAGTTCAATTCAAGTGTCATCACTTTCCCAATCATTGTGCATTTTGGCATCCGACCTGCCCAGCTTAGCTACGCCGGAGACCCACAGTATCAAAAGTTGTGGAAGAGTTACGTGAAACTGCGGCACTTGCTGGCCAACAGCCCGAAGGTTAAACAAATTGACAAACAGAAGTTAACACAGAGAGAGGAAGCTCTGCAGAAGATCAGGCAGAAGAATACGATGAGAAGGGAGGTCACAGTGGAGCTCAGCAGTCAGGGTTTCTGGAAGACTGGTATCCGCTCTGATGTTTGtcagCACGCCATGATGCTGCCAGTTCTCACCCACCACATCCGCTACCACCAGTGCCTGATGCATTTAGACAAGCTGATCGGTTACATGTTCAAGGAACGATGCCTGCTGCAGTTGGCAATGACTCACCCCAGTCATCATCTTAATTTTGGGATGAATCCTGACCATGCTCGCAACTCTCTGTCAAATTGTGGCATAAGGCAGCCCAAATATGGGGACAGGAAAGTGCATCATATGTACATGAGGAAAAAGGGAATTAACACCTTGATTAATATTATGTCAAGATTGGGCCAGGATGACCCATCACCCTCCAgAATCAATCATAATGAGCGCTTGGAGTTTCTTGGTGATGCAGTTGTTGAGTTCCTAACCAGTGTGCATCTCTATTACTTGTTCCCAAACCTGGAGGAGGGAGGGCTCGCCACGTATCGCACAGCAATCGTTCAAAATCAGCATCTTGCTATGCTTGCCAAGAAACTGGAGTTAGATCGCTTCATGTTATATGCCCATGGCCCTGACCTGTGCAGGGAGTCAGACCTCCGACACGCCATGGCAAACTGTTTTGAGGCACTAATAGgggCTGTTTACCTGGAAGGTGGCTTAGAGGAAGCCAAGCAACTCTTCGGGAGGCTGCTGTTCAACATTGAGGAGCTGAGGGACGTTTGGCTCAACTATCCACCTCATCCTTTACAGGTACAAGAGCCACTGACAGACAGGCAGTTGATCGAGTCGTCTCCAGTTCTGCAGAAACTCACTAATTTTGAGGATGCCATTGGAGTGCTGTTCACTCATGTACGTCTCCTCGCTCGGGCCTTCACTCTGCGAACGGTGGGCTTCAACCACCTCACCCTAGGCCACAACCAGAGGATGGAGTTCCTGGGAGATTCTATCATGCAGCTGGTGGCCACTGAATATCTGTTCATCCACTTCCCAGACCATCATGAAGGACATTTGACACTCCTGCGCAGCTCCTTGGTGAATAACCGTACTCAAGCAAAGGTTGCAGAGGAATTGGGCATGCAGGAATATGCCATTACCAATGATAAGACCAAACGGCCTGTTGCCTTGCGGACCAAGACTTTAGCCGATCTACTGGAGTCATTCATTGCGGCTCTTTATATTGATAAAGACCTGGAGTTTGTGCacacatttatgaatgtttGCTTTTTCCCACGACTCAAGGAGTTTATCCTGAACCAGGACTGGAATGATCCAAAATCGCAACTGCAGCAATGTTGTCTAACCCTGCGAACGGAGGGAAAAGAGCCCGACATTCCTCTATACAAGACACTTCAGACAGTTGGACCCTCTCATGCCAGGACCTACACAGTGGCAGTGTATTTTAAAGGTGAACGGATTGGCTGTGGAAAAGGACCAAGTATTCAACAAGCTGAGATGGGTGCAGCCATGGATGCATTGGAGAAATATAACTTTCCTCAAATGGCTCATCAGAAACGCTTCATCGAAAGAAAATACCGGCAAGAACTGAAGGAGATGAGAAGGGAGCGAGAGCGACAGGAGAGAGATAGTGATGAAGGGTAGAATAGAAAGTGAAGGAAAAAGCAGGATTTTACATAAAGTGAGTCGCACAACAGCACGCTTAGGAAAGCAAGAagctgtttgttgttgttttgtatataaatctatgtaaaaaaatctgtgtttgttAATCCAGTTCATACCATtggtatgttttaaaaagagaaatgttttgtgtgaaataaatcaaaccaTAGAAATTAGTTTACTGTGCATAATTTGGTGATCAAAACGTGATCATAATCCTATCAGATGTTTTTTGGCTACTGCATATTACTTTAAGGAACTAGTAAAGTgactaattattttttaatttagaggGAAATAtctgaattacattttcaatacgTTTCCATACCAAagagcaaactttttttttttttttttttttttttactgctgaaTAGTGATTTAACTTTCTTGTACTACATCATATTATTCACGCAATTTATTTGAGCTGCACCCTTTACTGAACAGgcacaaatatacatttctttcagcATTTCACTTTTGTTGTTAAAGGGCTTTTACGTTGTAAAATAggtttttgtattaaaaacaaacaaagcaagcCCTACCtagattttaaaagtaactcAAAAGTAACATAACTAGGGAAGCAAGGGTGGACTGGCCATCTAGAGAACCGGGAGAATTCTCTGTGGCCTGGCAGCTGATTTGGCCAGCTGCCcgacatttatttatcttttattaagTCTTGACTGGCAACGCAATTTGCTTTTCCCAGGCTCCGCACGTCCACCAAAAGGATGTAATACTCGAGTCGAGAATGTGGTGGATGTAAAACAGAGTTGTTAAACTGTCCTGTTCAAGACTTCAAGTTCAGATTAGTTGCATCTGTACATAGACTGTTgtagttttgtcttttgttttagtcattttgtcatttattctaGATGGTGAATACAAATCCTCAAAGTGTTTTGTTTGcaattttgaaaacatactAGCATAAAGTACAGTTTCCAACTGTAACTATTTCTAACTGTAACTGTTTCTAACTATTTCCAAACTGACCagaaatgcatctaaaatacttaaatatatagttGTAAATGGACTAATAGAGAGAATACTGCACAGACACAAGACCATTGATTGATAAAATCCAGTGATATCATGATATAGATTTGAAAAATTAGATCAAGGTTCTGATATTAGTGCCAAAGTGACACACCAATGGATGTTATTACGAACTTAATTTCGGttacttaaattaaatcatgcaaatgcattttccaCAGTGACAATCGTTTTACTGTAACATCAGTTTAaatcaacaacaataaaaaagacattcatCCTGGTcagaaaactttaatttaactttaacaaaaatgtataatattgataatattagtgaccaatttgtattatttatttgtatctgtattattaactaaaaatggTGACCATACACAGTCATCTTCtgattatttatctttttagcTTCTTCTTGCTTAAACATACCACGCAGGAAGAAACGTCTCTGTTATGTATGTAACACTCGTTCCCTGATGGTGGGAACGGAGACGTTATTTCGTGATGACAGActgggctccaagcaagacatAACTcctagtgactgacagacaagGAACTGCTCTTCTTTAGTTATAGAATCAGATGTGTTCCTTAATTATCATCTTCAGGTCAATCTGAGACTATAATTTATCATGTCATGAAATATCTGAAAAGGTCATTTTGTACTGAGATGGTTCAtttttagaagtctttgttCCCTCTGTAAGATCTCTTTGGTAATGTACTATAGATGAATTAATAACTAATAGCCCTCAGTTTTGTCTTATGTAAGATAGTAATTCCTTTTAATGGCAGCGTGATTTAATAGACTACCAAATCGTTATGTAAGTGgtaaaattattgttaaaaaagtatatatattccTCATGTAACTTTCAGTACGTTACATGAGGAAAATTGCATTTGCTGAAATGATGGCACAATGTAAAAAATCCTATCTGTATTAATCCCAAGTTTTTGTTAATGAAGTAAACTTTTTGGAATACCA

Function

symbol description
drosha Predicted to enable double-stranded RNA binding activity and ribonuclease III activity. Acts upstream of or within with a positive effect on primary miRNA processing. Acts upstream of or within angiogenesis. Predicted to be active in nucleus. Orthologous to human DROSHA (drosha ribonuclease III).

NR:

description
ribonuclease 3 isoform X2

GO:

id name namespace
GO:0016075 rRNA catabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0004525 ribonuclease III activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03685 rnc, DROSHA, RNT1; ribonuclease III

RNA

RNA id representative length rna type GC content exon number start site end site
TU126891 False 1313 lncRNA 0.32 1 5445407 5446719
XM_043254292.1 True 6066 mRNA 0.44 31 5426581 5446687

Neighbor

gene id symbol gene type direction distance location
psme2 psme2,LOC107716467,LOC107653260,LOC107551845,LOC107556770,LOC107674582,LOC107727955 coding upstream 3164 5420706 ~ 5423417 (+)
irf9 LOC107716470,LOC107551847,LOC107727954 coding upstream 14143 5405555 ~ 5412438 (+)
atp2a1l atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108411009 coding upstream 30069 5382602 ~ 5396512 (+)
ppp1cab ppp1cab,LOC107551850,LOC107674520,LOC107556769,LOC108413689,LOC108280818,LOC108274218 coding upstream 53596 5367524 ~ 5372985 (+)
paqr4b paqr4b,LOC107716446,LOC107653249,LOC107727949,LOC107674534,LOC107576563,LOC107551829 coding upstream 66727 5356354 ~ 5359854 (+)
kcnh4b kcnh4b,LOC107727971,LOC107674597,LOC107716465,LOC107551826,LOC103352817,LOC107556752 coding downstream 6110 5452829 ~ 5476664 (+)
oplah oplah,LOC107716462,LOC107674627,LOC107653252,LOC107727975 coding downstream 63979 5510698 ~ 5532907 (+)
ppp1r16a ppp1r16a,LOC107716460,LOC107653270,LOC107674642,LOC107727964,LOC107551825 coding downstream 97036 5543755 ~ 5564754 (+)
fkbp10b fkbp9,fkbp10b,LOC107674681 coding downstream 167360 5614079 ~ 5621340 (+)
si:ch211-217a12.1 si:ch211-217a12.1,LOC107674759,LOC108431403,LOC106590406 coding downstream 222181 5668900 ~ 5684328 (+)
G85661 NA non-coding upstream 23869 5397563 ~ 5402712 (+)
LOC122355395 NA non-coding upstream 268849 5154654 ~ 5157732 (+)
LOC122355394 NA non-coding upstream 282203 5142900 ~ 5144378 (+)
G85552 NA non-coding upstream 1113551 4312579 ~ 4313030 (+)
G85550 NA non-coding upstream 1114637 4311467 ~ 4311944 (+)
G85683 ghdc,LOC107556765,LOC107727961 non-coding downstream 36855 5483574 ~ 5485749 (+)
G85685 NA non-coding downstream 44995 5491714 ~ 5492934 (+)
G85687 stat5b,LOC107674616,LOC107556764,LOC107727963,LOC102309899 non-coding downstream 48388 5495107 ~ 5496234 (+)
G85713 NA non-coding downstream 154755 5601474 ~ 5602181 (+)
G85774 NA non-coding downstream 374712 5821431 ~ 5821687 (+)
LOC122355392 pnmt,LOC107571312,LOC107676565 other upstream 317535 5081165 ~ 5109046 (+)
G85587 NA other upstream 336943 5088925 ~ 5089638 (+)
G85567 NA other upstream 973306 4452855 ~ 4453275 (+)
LOC122355720 gnrh2,LOC107750862,LOC107671109 other upstream 1007368 4418247 ~ 4419213 (+)
LOC122355090 ebf4,ebf3,LOC107750882,LOC107668586,LOC107671096 other upstream 1018176 4399596 ~ 4408405 (+)
LOC122355829 tgfb1i1 other downstream 319678 5766397 ~ 5816315 (+)
becn1 becn1,atg6 other downstream 440233 5886952 ~ 5953486 (+)
G85962 NA other downstream 649229 6095948 ~ 6096732 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other downstream 768200 6214919 ~ 6216567 (+)
G86019 LOC107570179 other downstream 994102 6440821 ~ 6441526 (+)

Expression


Co-expression Network