lsm5 (lsm5,LOC107653262,LOC107727957,LOC107674592)


Basic Information

Item Value
gene id lsm5
gene name lsm5,LOC107653262,LOC107727957,LOC107674592
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5423084 ~ 5426511 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU127052
CTGTCGGTGCATCAGTGCCATCAACTGAGCTGGAGCGAGGAGAGGCCAACGAAAGAGTCAACGCTTGCTTCAGTCTGTTATCAAAATGGCGGCAGTCGCGGCAACGAATCCCTCGCAGCTTTTACCTCTCGAGCTGGTGGATAAATGCATCGGCTCACGGATTCACATCGTCATGAAAAATGATAAAGAGATTGTGGGAACCCTGCTCGGATTTGATGACTTTGTCAACATGGTTCTTGAGGATGTGACAGAGTTTGAAATCACTCCAGAAGGAAGAAGAATCACAAAGCTGGATCAGATTTTACTCAATGGCAATAACATCACAATGTTGATTCCTGGAGGAGAAGGACCAGAAGTTTGAGAAATATGTAGCCCcttccacaaaataaaaatacattttatgttcttGTTTAATTATAGAAACCTGAAAATTGATCACTCactgttttcaaacatttgtttttattttacgaGGAGTTTTTCCACATTAGTTCTTTGTATTCCTTAAGTGATCCAAAAAgattttgtaaacatttgttgcttgttacaataaaacagataaaatgaaATGGGCTAAGTTTTATGTTATATAGCATTTTGTGTGAAAGGTTCCTGAAgtgtgaatgaataaaataaggaTCATTTGTGAAATCGTCATTTTTAACGtggttctttattttaaaaatgtcacattttgcgaatttgtgcattttcctggtttattttgcatttgctgAAATAGATGTATATGTAGGTTTACATGAATTCCATCACTTGTACCACAACGCACTGTATGTTTATGAATGGCTTAACATGGTTACTAAAGACACATCTCTATAGAGTGTCATGAATCATTTGAAGAAATGAGAAATTCTGAAATCGGATGTAGTTGTAGAACTGTGCTTGTCTCAGTACATGGAGGGCTTCTCTTCTCCTTTAGGATTCGTCACTTTCTCCAGATTCTTGCTGATGACATCATAGAGTTCAG
>TU127053
CTCATTGCTATCTGAACGAACGGAGGAGCAGCACCAATTATTCATCAATAGTAATATAAATCTATGGCCGCACCCCTTCAGTTTATACAGCTATCGATGCCTGCTAATATCGATTTCTCATGCCTTATTTTATTCTCTTGGCCGATTACTGAGGTCTGTTATCAAAATGGCGGCAGTCGCGGCAACGAATCCCTCGCAGCTTTTACCTCTCGAGCTGGTGGATAAATGCATCGGCTCACGGATTCACATCGTCATGAAAAATGATAAAGAGATTGTGGGAACCCTGCTCGGATTTGATGACTTTGTCAACATGGTTCTTGAGGATGTGACAGAGTTTGAAATCACTCCAGAAGGAAGAAGAATCACAAAGCTGGATCAGATTTTACTCAATGGCAATAACATCACAATGTTGATTCCTGGAGGAGAAGGACCAGAAGTTTGAGAAATATGTAGCCCcttccacaaaataaaaatacattttatgttcttGTTTAATTATAGAAACCTGAAAATTGATCACTCactgttttcaaacatttgtttttattttacgaGGAGTTTTTCCACATTAGTTCTTTGTATTCCTTAAGTGATCCAAAAAgattttgtaaacatttgttgcttgttacaataaaacagataaaatgaaATGGGCTAAGTTTTATGTTATATAGCATTTTGTGTGAAAGGTTCCTGAAgtgtgaatgaataaaataaggaTCATTTGTGAAATCGTCATTTTTAACGtggttctttattttaaaaatgtcacattttgcgaatttgtgcattttcctggtttattttgcatttgctgAAATAGATGTATATGTAGGTTTACATGAATTCCATCACTTGTACCACAACGCACTGTATGTTTATGAATGGCTTAACATGGTTACTAAAGACACATCTCTATAGAGTGTCATGAATCATTTGAAGAAATGAGAAATTCTGAAATCGGATGTAGTTGTAGAACTGTGCTTGTCTCAGTACATGGAGGGCTTCTCTTCTCCTTTAGGATTCGTCACTTTCTCCAGATTCTTGCTGATGACATCATAGAGTTCAG
>TU127055
CTCATTGCTATCTGAACGAACGGAGGAGCAGCACCAATTATTCATCAATAGTCTGTTATCAAAATGGCGGCAGTCGCGGCAACGAATCCCTCGCAGCTTTTACCTCTCGAGCTGGTGGATAAATGCATCGGCTCACGGATTCACATCGTCATGAAAAATGATAAAGAGATTGTGGGAACCCTGCTCGGATTTGATGACTTTGTCAACATGGTTCTTGAGGATGTGACAGAGTTTGAAATCACTCCAGAAGGAAGAAGAATCACAAAGCTGGATCAGATTTTACTCAATGGCAATAACATCACAATGTTGATTCCTGGAGGAGAAGGACCAGAAGTTTGAGAAATATGTAGCCCcttccacaaaataaaaatacattttatgttcttGTTTAATTATAGAAACCTGAAAATTGATCACTCactgttttcaaacatttgtttttattttacgaGGAGTTTTTCCACATTAGTTCTTTGTATTCCTTAAGTGATCCAAAAAgattttgtaaacatttgttgcttgttacaataaaacagataaaatgaaATGGGCTAAGTTTTATGTTATATAGCATTTTGTGTGAAAGGTTCCTGAAgtgtgaatgaataaaataaggaTCATTTGTGAAATCGTCATTTTTAACGtggttctttattttaaaaatgtcacattttgcgaatttgtgcattttcctggtttattttgcatttgctgAAATAGATGTATATGTAGGTTTACATGAATTCCATCACTTGTACCACAACGCACTGTATGTTTATGAATGGCTTAACATGGTTACTAAAGACACATTTGAAGAAATGAGAAATTCTGAAATCGGATGTAGTTGTAGAACTGTGCTTGTCTCAGTACATGGAGGGCTTCTCTTCTCCTTTAGGATTCGTCACTTTCTCCAGATTCTTGCTGATGACATCATAGAGTTCAG
>TU127056
CTGTCGGTGCATCAGTGCCATCAACTGAGCTGGAGCGAGGAGAGGCCAACGAAAGAGTCAACGCTTGCTTCACCGATTACTGAGGTCTGTTATCAAAATGGCGGCAGTCGCGGCAACGAATCCCTCGCAGCTTTTACCTCTCGAGCTGGTGGATAAATGCATCGGCTCACGGATTCACATCGTCATGAAAAATGATAAAGAGATTGTGGGAACCCTGCTCGGATTTGATGACTTTGTCAACATGGTTCTTGAGGATGTGACAGAGTTTGAAATCACTCCAGAAGGAAGAAGAATCACAAAGCTGGATCAGATTTTACTCAATGGCAATAACATCACAATGTTGATTCCTGGAGGAGAAGGACCAGAAGTTTGAGAAATATGTAGCCCcttccacaaaataaaaatacattttatgttcttGTTTAATTATAGAAACCTGAAAATTGATCACTCactgttttcaaacatttgtttttattttacgaGGAGTTTTTCCACATTAGTTCTTTGTATTCCTTAAGTGATCCAAAAAgattttgtaaacatttgttgcttgttacaataaaacagataaaatgaaATGGGCTAAGTTTTATGTTATATAGCATTTTGTGTGAAAGGTTCCTGAAgtgtgaatgaataaaataaggaTCATTTGTGAAATCGTCATTTTTAACGtggttctttattttaaaaatgtcacattttgcgaatttgtgcattttcctggtttattttgcatttgctgAAATAGATGTATATGTAGGTTTACATGAATTCCATCACTTGTACCACAACGCACTGTATGTTTATGAATGGCTTAACATGGTTACTAAAGACACATTTGAAGAAATGAGAAATTCTGAAATCGGATGTAGTTGTAGAACTGTGCTTGTCTCAGTACATGGAGGGCTTCTCTTCTCCTTTAGGATTCGTCACTTTCTCCAGATTCTTGCTGATGACATCATAGAGTTCAG
>XM_043254308.1
CTCTTGGCCGATTACTGAGGTCTGTTATCAAAATGGCGGCAGTCGCGGCAACGAATCCCTCGCAGCTTTTACCTCTCGAGCTGGTGGATAAATGCATCGGCTCACGGATTCACATCGTCATGAAAAATGATAAAGAGATTGTGGGAACCCTGCTCGGATTTGATGACTTTGTCAACATGGTTCTTGAGGATGTGACAGAGTTTGAAATCACTCCAGAAGGAAGAAGAATCACAAAGCTGGATCAGATTTTACTCAATGGCAATAACATCACAATGTTGATTCCTGGAGGAGAAGGACCAGAAGTTTGAGAAATATGTAGCCCcttccacaaaataaaaatacattttatgttcttGTTTAATTATAGAAACCTGAAAATTGATCACTCactgttttcaaacatttgtttttattttacgaGGAGTTTTTCCACATTAGTTCTTTGTATTCCTTAAGTGATCCAAAAAgattttgtaaacatttgttgcttgttacaataaaacagataaaatgaaA

Function

symbol description
lsm5 Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of Lsm1-7-Pat1 complex; U4/U6 x U5 tri-snRNP complex; and U6 snRNP. Orthologous to human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated).

NR:

description
PREDICTED: U6 snRNA-associated Sm-like protein LSm5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127052 False 988 TUCP 0.37 6 5423084 5426511
TU127053 True 1069 TUCP 0.36 5 5423084 5426127
TU127055 False 943 lncRNA 0.36 7 5423084 5426127
TU127056 False 977 lncRNA 0.37 7 5423084 5426511
XM_043254308.1 False 516 mRNA 0.37 5 5423503 5425993

Neighbor

gene id symbol gene type direction distance location
emc9 emc9,LOC107716469,LOC107551848,LOC107674563,LOC107727956,LOC107653261 coding downstream 3218 5415899 ~ 5419866 (-)
pelo pelo,LOC107653258,LOC107674509 coding downstream 55941 5360364 ~ 5367143 (-)
ccser2b LOC107716476,LOC107653247,LOC107727960,LOC107569472,LOC107674460 coding downstream 92851 5280381 ~ 5330233 (-)
LOC122355389 grid1b,grid1,LOC106578986,LOC106589364 coding downstream 367969 4929813 ~ 5055115 (-)
LOC122355129 LOC107560557,LOC107753319,LOC107735415,LOC107694068 coding downstream 1185855 4232549 ~ 4237229 (-)
ghdc ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004 coding upstream 51011 5477522 ~ 5486280 (-)
stat5b stat5b,LOC107716464,LOC107674616,LOC107653267,LOC107556764,LOC107727963,LOC107551841 coding upstream 61289 5487800 ~ 5504829 (-)
foxh1 LOC107716461,LOC107551840,LOC107556762,LOC107727966,LOC107653269 coding upstream 108662 5535173 ~ 5540436 (-)
adam11 adam11,LOC107716458,LOC107653271,LOC107727973,LOC107674663,LOC107551824 coding upstream 138097 5564608 ~ 5600663 (-)
dbf4b LOC107556759,LOC107727974,LOC107674674 coding upstream 176170 5602681 ~ 5613207 (-)
G85572 NA non-coding downstream 969808 4452755 ~ 4453276 (-)
G85569 NA non-coding downstream 1010884 4411340 ~ 4412200 (-)
G85553 NA non-coding downstream 1110036 4312579 ~ 4313048 (-)
G85551 NA non-coding downstream 1111180 4311453 ~ 4311904 (-)
G85545 NA non-coding downstream 1138149 4275337 ~ 4284935 (-)
G85868 NA non-coding upstream 300793 5727304 ~ 5731090 (-)
G85889 tgfb1i1 non-coding upstream 384146 5810657 ~ 5814446 (-)
G85891 NA non-coding upstream 393838 5820349 ~ 5821178 (-)
G85892 NA non-coding upstream 410861 5837372 ~ 5837674 (-)
G85893 NA non-coding upstream 412048 5838559 ~ 5838957 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other downstream 26172 5322478 ~ 5396912 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 1006187 4412573 ~ 4416897 (-)
trnal-uag_71 NA other downstream 1026591 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 1029929 4393074 ~ 4393155 (-)
trnal-uag_70 NA other downstream 1031248 4391754 ~ 4391836 (-)
G85925 NA other upstream 558478 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 564402 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 624657 6051168 ~ 6078068 (-)
G86049 LOC101886504,LOC101886427 other upstream 1243808 6670319 ~ 6671247 (-)
G86108 NA other upstream 1677369 7103880 ~ 7104218 (-)

Expression


Co-expression Network