G85889 (tgfb1i1)


Basic Information

Item Value
gene id G85889
gene name tgfb1i1
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5810657 ~ 5814446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU127155
TGGGcactgaatttaattaataaacaagtttcacaatttgcattgaattactgaaataaatgaacttttccacagTGTTCTAATTTATGGAGATGCTTGTACTGTGTATCTAAAAACAGTATCATTGGTAGTACATACATTTTACTTCAATATACAGCACGTTTCTGATCAAGTCAGGTGTCATCACACTTTATACAGTATTAATtgtatcaaaaatataaaaaataataatcctaATATTgcagtaatataatatagaaattaaAACAATCTTCCAATTATGCAAACAACCTTCAATTCTGCTAAAAAAGGAACAGAGTGTATTATGTGGacaaatttaaaactatttgtaGGGCAGAACCTATTTACATTAGCTCCACCCACCAATGCCTGGCTGTGATAAACAGCacgaaaaaaaccccacatgcaCAAAAAGGCATTGTGACAAAAACCTACATAAAAGCACGCCTGTTTTATTAAACACTGTATTAATTAGGTGAGCATGATTTCACCAAGTAGCCTACAAGTTGTCCCTAATGTAATTGTTCAGTTAAAGACAGCTCAGTTTCAGCAGATTCAGTTCTGTCAAATATGTCAATTtgattaattatgaaattatgagTTTAATTGGACAagattatgtattatttacttCTATGAGCCTTATTAACAAGCctttgtaaacatttgtttgtaAGGTAACAGACATTTGTTTTTAAGGTAACAGACTCGACAGctctgctgaataaaagtttgcatttgtcATGTGATAATTAAGCATACTACTCTAAAACATTTGTTACTTATTGTATACTGTTTCACACAATATTCCTTAAAAATTACCAGGCAGCATACACTGTATACTGGGCAGTAAGCAAGTACGCCATTTCAAACACAGCCCATGTATTTTCAAATAAGCCTTAATGACTTGATTGGCTGGATCAGGtctgtttaattagggttgcatctaggGCTATGGCCCTCAAGGACTTAAGACACCCCTGGCCTAAATCAAGACAATTATGAGGTACCATCATATGGATTAATTATTCAGCTTGCACAACATAAGCAGTGCAGCCAAAGAAACAAAGAACTAAATTTCAGGTACACTAAGGAAGTAGAAAAAATCTCCAAACTGAAATGGACACTGTGATTTCTGTTAAActtactttaaaatgaacataaattgGCTATGAAACAAACTGTGATTATAGTATTTCCTTATTGTGAcctaaaacattacaatatgtAGGGTAGTTCTTGGTTTTGTCCATCATGGCCCATTGACACTGGTTAATTGATACAGCTGCAACACGTGAAACTCATTAGGCTTTAAAAAGCCAGTGATTTGGCAAGTAATGGAAATTTGTATTTGAGTATGTAATTTTCCACTTTAATCAAATGTCATTTTCCACCTTATTCCACTCTGTTCAAAAGTGGAGATTAGACTGCCTCTAAGTCTATTTTGGatgcactttttatatttcagattgtttttttcctataatatttgaaaattccTTTTATTGTACCAGAGCATTACCCTGCGTTTCCCTTATCTTGGAGTCTCATCTTAAAAAGCATAAGACTATATTTAATGTTTGCCCACaataatttcaaacatttctaaCAACATACAGTATAGTGCATAATGTAATGCACCAGAGTAAAAAGAAGAATACCAAAAATACATTGGTATTATTGATGAACAAGTGGTCTTTTAAACAATAAGAGTAACACTTTTCCCAGAATACATTATAAAGGGTTATTAAAGGGCATAacacattataattattcataatgtgcaATGTAATACAATATATCTTGTTGTAGGTAATTataaccaaatttaaaatgtatagagTAAATTGTATAGAGCAGAGTGAATTGATGTAGTGttgtaatatattaactatattaacTGTAAGAGATTGTACAATGCATAAGGTGCATTACAAGgcttaattaatgcattataactacttttacaagtgttttttttttcaaacagatCATGAcaccaaatatttatattcataaaatattatacagcaTTATTACCTATATTATAAGTTTTATAACTAAAAGTATTGCTGAACTTGATTTTATAATATGGATAATTGGATAATGGATTATTTTTGTAGTCCAAGGCTTTCAAACTATTCCTAGACTCTCCCCAGTACTGCACATttttgatttctctctctttaaacCCACATAAATTAGTCATCAGctgatcaatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaatccAATATGATTGATAGGGCACAGAATCTCCTTCTAAAATCTGTATTTGTTTATCAATCACTGTTATTCATCAATGATTTTCAAACCTGTCCTAGTGTGCCCCCACCCTTGTACATTTTGGATGTCTCCTCTATCAGACAccaatacagatttaaaaagcacttaaaagtatgcaaatacaaatgattttaaAGCTATGCCATTCAGTAACATTCTAGAGAATTTGGCAAGGCCCATTTTCTGCAGCATGACAATGCATTTGtgcacaattttatatataacaatgttaatataaaattgcTTTTCTCGGTCTGATGTAGACTTAACCATGGGCCAAACCTGATCGCTGTTGAGTTTAGGATAAACGCAACATCAAAGTCTGACTGTCACAGTTCACAGGTttgcttcctctttctctctccctcctgtGTGTGTCTTTACCCTGCTGAGTCTTGACTACTTTCAACTCATTTTGCTCATTTCCCACCTGGTCCTTGACTGTTTATACTCAATGCTGTGTCTGCGCTACCAGTGTAAAATTACACCTGCACTTGTGCTGAATTCTGTTTGCTGCTGATCTCTgctaatttaataaattgtttacatattcagttaaatacttttttaaacaatgttttctgTGACAATGCCCTCACATCTTCTAAATCTTCTAAATGGCAACAAATTGCAGAATCCCTGTAGAACATTGTGTGGTAAAGCATTAAAGGTGCACTATGCAGGATTTTCTGTTCTTGTTCAATTATAGTATTCAAACTTGACCAGAATGCTCTTCAATGCCTCTGACATGGTATCAGCTTCAAGAACACGTGCAGCATCTTGTAAAAAATTGTAGCATAGAAATGCACAAACACTACCAGACAATAGTAGATCATAAGTAATAGTTTAAAGAAATTTGTAGTATATATTTGTACTATACTGTACTATACTatacttcatttgtttttttggggggtttttttttggaaaagccCTTCATAGAGCACCTTTAAAATTAGGAGATAGGAATATTTATATCTGTTATTTACAGTAGGAGTGTGTTCACATAAAATACGTTacaatgtatatttgtatatttgttttgttttgttttgtatgacATGCTGTATGGCAGTTGAATAATCTGCTTGATCATCTTTCCTCACTCTCCTCAACCAAAGAGTTTGATGAAGCAGGGGTGGCAATATGGTTTGTTGTCCTGCTCTTTGAAGCAGCCTTTACTAAGGGGTTTCAGGCAGAAGTGGCACACCAGATGTTGTGGATGAAACTTGGCACCCATCGCGGTAACACAGCGCCCCAGGATTGGCTGCTGGCATGCCTGACACACACTTCCCCTGGACTGATGGTAGTGAGCTTCACACAAAGGTTGCCCCTCATGTTCAAAGAAACTCCCGTTCACAAATGGGCTATAGCA

Function

symbol description
tgfb1i1 Enables several functions, including I-SMAD binding activity; Roundabout binding activity; and androgen receptor binding activity. Involved in several processes, including positive regulation of epithelial to mesenchymal transition; regulation of transforming growth factor beta receptor signaling pathway; and ubiquitin-dependent SMAD protein catabolic process. Located in focal adhesion. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: transforming growth factor beta-1-induced transcript 1 protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127155 True 3726 lncRNA 0.34 2 5810657 5814446

Neighbor

gene id symbol gene type direction distance location
pkmyt1 pkmyt1 coding downstream 48046 5748277 ~ 5762611 (-)
sult1st6 sult1st6,LOC107674799,LOC107708285,LOC107574469 coding downstream 64127 5736592 ~ 5746530 (-)
avl9 avl9 coding downstream 77369 5703313 ~ 5733288 (-)
buc2l NA coding downstream 120268 5685526 ~ 5690389 (-)
aclyb LOC107727950,LOC107556756,LOC107674696,LOC108431393 coding downstream 151712 5628746 ~ 5658945 (-)
mylpfb mylpfb,LOC107571443,LOC107674915,LOC108443170,LOC102793118,LOC101482131,LOC108274226,LOC102196412 coding upstream 60639 5875085 ~ 5878221 (-)
neurod2 LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320 coding upstream 203545 6017991 ~ 6022156 (-)
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding upstream 383036 6197482 ~ 6280348 (-)
hexim1 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 coding upstream 1356950 7171396 ~ 7173368 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding upstream 1360172 7174618 ~ 7182834 (-)
G85868 NA non-coding downstream 79567 5727304 ~ 5731090 (-)
G85572 NA non-coding downstream 1357381 4452755 ~ 4453276 (-)
G85569 NA non-coding downstream 1398457 4411340 ~ 4412200 (-)
G85553 NA non-coding downstream 1497609 4312579 ~ 4313048 (-)
G85551 NA non-coding downstream 1498753 4311453 ~ 4311904 (-)
G85891 NA non-coding upstream 5903 5820349 ~ 5821178 (-)
G85892 NA non-coding upstream 22926 5837372 ~ 5837674 (-)
G85893 NA non-coding upstream 24113 5838559 ~ 5838957 (-)
G85922 NA non-coding upstream 143132 5957578 ~ 5957779 (-)
G85923 NA non-coding upstream 143849 5958295 ~ 5958527 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 384146 5423084 ~ 5426511 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other downstream 413745 5322478 ~ 5396912 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 1393760 4412573 ~ 4416897 (-)
trnal-uag_71 NA other downstream 1414164 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 1417502 4393074 ~ 4393155 (-)
G85925 NA other upstream 170543 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 176467 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 236722 6051168 ~ 6078068 (-)
G86049 LOC101886504,LOC101886427 other upstream 855873 6670319 ~ 6671247 (-)
G86108 NA other upstream 1289434 7103880 ~ 7104218 (-)

Expression


Co-expression Network