XLOC_006643


Basic Information

Item Value
gene id XLOC_006643
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 25846532 ~ 25853311 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013792
GGCGACTGGGGGGAGGAGGGGGTGTCAGTAAACCGCCGCGTGGATTTAGAAATATAAAGATGCTGTAAACAGCGCTGATGCATTCGAAATTAAAGAGACATGAAGCGTATAACCGAACGCGATGACAAGCTAGTTCAATGCATGAGGTGGGAGGAAGAGAGAGACACCCCTGCGAACTAGTAGAAGTACAACTAGACTATAGCGACTACTCCAGAGAAAGCAGAGGCTGCGTGAACAAGTGACAGTCTGCGGGGAAAAGGCACAATTCAATAGGGAACCGATCGGAGTTGAAGCCGAATGCTGGAGATAATACGTGACCCGCGAGCGAAACCATGGACAGCGACTACGCGAAATCAACTCACTGCCACACAAACTCTGGCAGCGAATGAGCTTGTCTGTAAACACGGGAAGAAACATCAGAGAACACACTGCTGACGATACCGCAGAAGAATTTACCGAATGGCCTTTACAGCGGGAACCCCGACTaaacacactctttctctcttaCGCTTTAAGTCTGACTATAAACTGCTTTCCAACAGGTTCTAAAGGAAGCCTTAAGAAGATGgataaaacacactgctgaaacacGTTGATCTGCTAATTTTCTTTTCACAAATACCACATGAAAAGAAAACAGAAGCATACATGAAGGTGTTACAATAAtttacaatagaaaaaaatatggaaatgttgtttgtgttgtttttaataaagcaatcAAAACTGTTCATA
>TCONS_00013793
GGTGGTTGGTGGTGGCTTTCAGCTCGGTTCACATCGGGAGAGCCGGGTTAGAAAGGAGACTCCAGAGAAAATATCTTCATCAATGCCTTTGACATccaaaataaattagaaataataCAAAGATGGCGCAGGGAAGATGGATTGTGGGATAGCCGTCATGGCTTTtttgaaaagagagagagagagatgaaaaaATGGCAAAAGCCCCCCTGAGCTGCAAGTTCAAGTGCGGACGTGACGTCCCTGCGAACTTGAACGTCAGGAGATGGATGGACACAGACATACAGAACATGGGCAGGGCAAAGCCGTGGAGTAGGAGGAGGGAGTGGAAATAACAAAACCAATGGACACTCATTAGGGGCTGGACATGAAAAATAGACCCGAAGAAGCCAATGGACAGAAAGATCAGGGGGCCGGACAAGAGGCGAGAAAGAGGGAGCGAgagacaagcacacacacaaggagagagagagggggagataTGTTTAATGAAAGCAATGTGCGctgcggagtgtgtgtgtgtgtgtgtgtgcgtccgcGCGCGCTCGCGCTCTGGGGGTGGACGCAGGAAAACAGAGCACGAAAAGCCAATGGACAGGAGATTCAAGGGGGCCGGACGTGCTATATATACAAAGACAGTGAGAGAGGAGCCTCGCATTTAAGGTTTCGTAGTGGACACTGATGGTGTTTCAAACACACTGACTCAACTCCTGGTCAAACAGTCAAAGGTAGCGCGCAAGGTAGCTGCTTTTCAGCGAGACACGATCGGGTTGCATGAACAGGACAGACAGGTTCCGAGCCGGGGCATGTGCAGGGTTCAACCGCCGCGTGCGCTGCCACATTCCTCCAGCTCAGAGAAACTTAAGGCACATCACATAAAGCGGGATGGGATACTTGCTCGTGCGCTCTGCGCGCGATGTAGGTGGGACTTAAATACTACAAGAGtgtaattgtaaaaatataacaACACACTGACGAATAGATTGTGGGAGCAGCCCACTAGAAAGAAAGGGGACGGGGTAATAACTTTCAGATGTGTTCAGATTATAGAGAATGGCGACTGGGGGGAGGAGGGGGTGTCAGTAAACCGCCGCGTGGATTTAGAAATATAAAGATGCTGTAAACAGCGCTGATGCATTCGAAATTAAAGAGACATGAAGCGTATAACCGAACGCGATGACAAGCTAGTTCAATGCATGAGGTGGGAGGAAGAGAGAGACACCCCTGCGAACTAGTAGAAGTACAACTAGACTATAGCGACTACTCCAGAGAAAGCAGAGGCTGCGTGAACAAGTGACAGTCTGCGGGGAAAAGGCACAATTCAATAGGGAACCGATCGGAGTTGAAGCCGAATGCTGGAGATAATACGTGACCCGCGAGCGAGTGAGTGAAACTGCTTTGCAGGCTTATACGCTGACATCTTTGTTTCTGGACCAAGACTGATCGCTGTGTTGGTGCGCGTGTGTTTTTTTCCGACGCGAGGTGTCAGATCTTAACGCGAAAGTTGAGTCAGGTTTGTGCTGGGTAAAAAGGTCAACTTTGCGCGAGATCTATCTGGGAATACCAATGGATCCGCTCGACTGTACCACACTGACTGTGCCGATGCTTTTCAGGTCATTGTTCTCAACAAGTGCATATGATTAAAAGCACCGTATCGATCTGAATTTTGTATTTCCAGCCTTTGATATCATTTCGACGCAGCGCACTATTTTCAGCGTGCACAAAAGGAGCTAGATACATTTAGCACTTTTAAGAGTTCCGCGCATGAATGCCGTTTCAGAAATAATGTGTTGCTTTAAGAAAAGAACAATATTCAATATAAAACAAGAAACAGTTCTTATGTTAAGTTTAGATATGCTAATTGAACTGGTTTCTTTAAAACACAAGCACAGGCGGTTTGTGGATGATAAAAAGTAACTAAAGAAAATTCTCAGTCAGTAAACACTTCTGGGCTTTAAAGTGggactttttactttttaatgtcCACGAACTTGTTTAAGGAATTCTTGACAGAGATTGTGCTTTCTGTGTTATGTATCCCACAGAAAGACTTCATTGTTAAACTTTGTTCGATACATCACCGTGTAGGCTACCTAAAATACAAGTTTGCCGAAATAACCTAAAAGTTATAGTTCGAAATAACCCTTCGGGTTTGCTGTAGTCTGaatgtttaattaaacatttgaaaCCCTTTTAAATCCGAAAGCATTATTCCCCACGAGTAAACAGCAAATATTACCGAGGTTAGGGCGCAACGTGCGCAAATATCTTCTGCTTTAGGAGCTGGACAAATTTGGGGACGTTTACGCATTTCAGCAGCACTAACCATGGCACCTGCCCACTCAGGCCATTGGCTGATGGACCgccttttttccacatttttttttactttcatgaaACTCTCTCTTGCTCCTAGGCGAACATTGATCAGACCAAACGGAGCGTTTACACCTCCTTCAGGAATGGAAGCTATCAGGCAGCAACAAAACGCCGCGTACAAACAGAATCTCAATATGTAAATGACAATGCGACTGATCCCATCATAAATCAGCCAGACGTTAAATGCATTGCAATATCCATCTCTCCAATGCACGGTCAGGCGCGCTCGCTCGTACAGAAAAAGTGCTTTTGTGTGAGAGAATGACAGAGGGAGCGATTGGAAATGAGAGTGAGTGGAAAGTGCGATGACAGATTCATGCTTAAAATAACGTTTTAGTTCAGTGCGTCAGGCCCTGTGGATGACACAAAAACCAGATTACCAAACCTACATAATAAAAATGTTAGTAGGTTTTCACTATTGGATATTATACCGGGGGTGAGGGGATTAATATTGGTACATGGGTCAGGTGAAAAGCAAGACAGTTAAATGTCTTTTGGTCATGTGTCTGCCTTCCACGGGTAGTGGCTCAAGGAAATTGACTGACTGGCCCCTTGGGCACATTTTAATATATGGAAATGACCGAGGGCTTATGCGATAAATCAACGCCCTACGCCCTGTTCATGCTTCACTCCTCTCATTTTCCCACTAGCTCTGGCAATTCATCAGCAGATCTGTTTTCCTGCAACTGTTGTCCAGCGCTGATGTCACGTTTAAAGAGAGGCTTTTAGCATTTACTAGCACCCGTCGCGTgcagttagtgtgtgtgtgtgggccagtgttttcatttatttttctatattatcaACTTTAATGAATTTGCAAATTCTCATTGTGAGTAATTTTGgttataatttctttattattttttagttttccACGTCTATTCCAATTTTAAACGTGACATATTTAAAGCAATGTTCTTTTATACTTTTAGGATtttgttattttcattatttttaccaAATATGTTAAACTTTTTGATTAATGCCTTCATCGTCACTCATCATTGAGCATTTTATGGATCAACAAAATGTTTTGTAAACACGACTAATTGTGTTAATTAGTGCTAAAAAACTACTCTgcaaaacagtaaaaacaaatctTATATAGCCTATACTCGATTATTTATTTAGATTCCCTTTGCTATTTTTAATATATGCATTTGTCATTACGTGTgtcttttaataaaaacaaatttcatacaataaagttttttttaaacctacAGTGCGAATATGTGAGATACGTTCTACTGGTTTAATCCAAACCCAGAGCCATGgcagacagaaataaaaaaaaataaataaataaaccaaaaatgctAGATATGTATATGCCCCGTTTTGTTTTCCATATATGCATATTATATGATGTAAATACTGGTTCACAAAGATATTTATGGATAGTTTTGAATGAAGGCATGCACTGGCCCTCCTGCATGAAATTATTCGGCTTCCTTGCCTTGTTCGTAGTTAAATTAAAATGGCATGTATCTCTCAGCTACGGTTGTAATCGTGATATTATCCTCTTACGCGTTCCTCTGGGACAGGCTCTGCGAATAGCTTTTGAGTAATTAACCATGTAAAATGTCACTATAGGAAAATTGAGCATTATTAACGAAATTATTTTATCTAAGAACAGTTTGCAAAACATGCTTCATTCGAACACAAAACCTCCAatagaaagaacaaaaaaaaactcatagaGGATGCCAGTGCAAACATTTCTTCACTTTGTCCAAAATATCGCAAAGCCATAATTTGACATATAAACCAACCTGGCAGTATTATATGTAGGCCTCGTCGTGTTGACTGAGAGATACTTTGACCACCTTAAATCTACAGATACCACAAAATACAAGTTTTACCTCAAAGGACGGAGAAAGGCGAAATGGGAATGCTCTTAAAATCCCTGGTAAGTCAAGCTTTGCCTGCTTTAAGGAATTTTAAGCTTCGGCAGTTCAGACACATTCGCAGActgaaaattaatattaatggCTAGATTTCACAATGTGGCATTATCACACTGAGCGATGGGTGGGCATGCCATCTGGGTTTTGGCAGGTATTAGATATAATCAAAGGGATTACGACTCTGTGGGCGAAATTATAAACGTGAGTACTGCTTCTTTCACAAAAGCAACGGCATGTGAGCGAGTTAAAGAGGAGAATAAGAGGAGAGACTGAGGAAATCAGATTACCTGAGAGAGCGGACTACACATGTGGTGACTCTGCGAGATATATCATTATAAAAACGTTTTATACGAACATAATACACATCCTTAACTTTGCGTAAACGTTATTGTAAAGTAAACCAGGTGGTGTTGTTTATGCTGTAGTAACTGTTATTATTAGCCAACATTATGTTGATTAATGGATGCAACTGAGCCTGTCGTTTAACTTTTCGTTCATTTGCATGTTCTTGCAACCTGATGTTCCTTTAGAGAGGATGCTAAAGTGATAACACAACAGAAAATAAACCTAGAGAATACACATAAATGTCTACTATCAGTGGGGATAATGTACACAGAGGCCTATAAGTAAACTATACGTCAAATCACAGTTTCTCAAAGTCTTTTCATCACGTTTGAGTCCGGCCAATGATATAAATTGCAACCATATCTATTTTTTATGATAAACTTAACCTTTTGCGTAATTATTTAGAAATGGCTTTGAAGAAAAACAAGTATTAAAGaccatttaagtttaatttgTTTGGTTAAATTGCTTTGTAGCATAGCCTAATTGCAAAAAATAAGCGGGACAAGCATATAATCAAATATAGAagttaattataacaataaaatgaatataaatgtaaattctGGAAACTTTTAAAAAGGTTTCTGATGATAGACTCGTGGACTCGCGGAGTTTGGGAGAAGAAAGGAGCAAAAGAAATGTTTCGTGGTCCAAGCTCCCTCTAGTGTGCGAAATTATAATGACACAGAATGCTGTTACAAGGAATCGCCGTAGCCCACTGAAAGAGATGAATGAAGGAATCTGGTTTTATAACATTACAAATCATTAAACTAAATcgttcagcaaacaaataaaaatacaactttttaaaGAGAAATAAACGTCTGGGTTTAGAATAGAAAACCGTTTTCATCGTTGAGAAAGTGAAAGTTACTTCCTTCGTATTTTAAATAGCTATATTTTCTCTTGGATATTCTTAATGTTTCTTTGCATATTATCTTGGTTAATTATTGATCGtaattgatttgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttatttaagcTATAGGCTGTACAAAAGATGTAGTAtttctataaaataaatgtttatacaacTTTTTTGTGTAGcctatttattttagcttttcatTGAGAAGGGTGATAGTCATCAGGAAGCCTATAATTACgaaacaagaaaaataaacactggttatattttttacacaaaatagATAGCCAACTATAAAAGCTGTCTCTTGATTTGATGCGTTTTATATTTGCATTAAACTTAAATTctgctgaaaatgttttttttttttttaaagatttaacttTAAAGATGAAGCCAACTTTAAAGCTTTTTTggttttaaatagattttacaaCTACATTAAATTGCTATTTTCTCATGATTCGACAGTGTAAAAATGAACAGTCTTTCCCCAACTCCCACGTCAGcaactgaaaataaatacagGAGTCAGCACAGCTTTGATATACAAAGAACGAGATTTGAAATATCGTAAATCAGAAATACAATGCACAGCACACGCAATCTAACAGTTCGTgggaaaaattattattttttgtacagtCCTTACATCCAGCAGTAATTTGTCAAGTTGgctgaaatgttttcattttaatcagACTGAGTTGTGGCTGTTATAATTGCTTCAGAACCATGGACAGCGACTACGCGAAATCAACTCACTGCCACACAAACTCTGGCAGCGAATGAGCTTGTCTGTAAACACGGGAAGAAACATCAGAGAACACACTGCTGACGATACCGCAGAAGAATTTACCGAATGGCCTTTACAGCGGGAACCCCGACTaaacacactctttctctcttaCGCTTTAAGTCTGACTATAAACTGCTTTCCAACAGGTTCTAAAGGAAGCCTTAAGAAGATGgataaaacacactgctgaaacacGTTGATCTGCTAATTTTCTTTTCACAAATACCACATGAAAAGAAAACAGAAGCATACATGAAGGTGTTACAATAAtttacaatagaaaaaaatatggaaatgttgtttgtgttgtttttaataaagcaatcAAAACTGTTCATA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0048880 sensory system development biological_process
GO:0001654 eye development biological_process
GO:0150063 visual system development biological_process
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013792 False 735 lncRNA 0.44 2 25846532 25852256
TCONS_00013793 True 6780 lncRNA 0.39 1 25846532 25853311

Neighbor

gene id symbol gene type direction distance location
XLOC_006642 papolg coding downstream 4458 25824345 ~ 25842074 (-)
XLOC_006641 rel coding downstream 26707 25795511 ~ 25819825 (-)
XLOC_006640 NA coding downstream 67717 25776389 ~ 25778815 (-)
XLOC_006639 pdlim1 coding downstream 72349 25762908 ~ 25774183 (-)
XLOC_006638 sgpl1 coding downstream 95622 25725547 ~ 25750910 (-)
XLOC_006644 NA coding upstream 156186 26009497 ~ 26703804 (-)
XLOC_006645 NA coding upstream 680043 26533354 ~ 26544816 (-)
XLOC_006646 AL627132.1 coding upstream 713755 26567066 ~ 26567184 (-)
XLOC_006647 vrk2 coding upstream 926693 26780004 ~ 26799244 (-)
XLOC_006648 ccdc85a coding upstream 1147083 27000394 ~ 27038407 (-)
XLOC_006471 BX537274.2 misc downstream 15581627 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 25020307 825904 ~ 826225 (-)
XLOC_006633 BX005252.1 non-coding downstream 315884 25530534 ~ 25530648 (-)
XLOC_006629 NA non-coding downstream 561816 25210158 ~ 25284716 (-)
XLOC_006619 NA non-coding downstream 1223307 24590420 ~ 24623225 (-)
XLOC_006649 NA non-coding upstream 1374050 27227361 ~ 27227750 (-)
XLOC_006650 NA non-coding upstream 1418027 27271338 ~ 27277709 (-)
XLOC_006620 AL831745.2 non-coding downstream 1239905 24602410 ~ 24606627 (-)

Expression


Co-expression Network