G86330 (ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211)


Basic Information

Item Value
gene id G86330
gene name ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7615868 ~ 7617213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU127752
ttttttttatttttttattttttTATCATTTACTTCATAGCTTTATTGCCATTAGTTAGTTCTTCATGTTCCAGTTTAAAACATTCAGCATCAAAACAggcttataaataaatataaatattagtctAGGTTAACAAATATAGTTCACATCATACTTAGAAATAGCACAGCCATATCTCTGACAATTTTTCTTAGTCACACATAAatacaagcaaaaaataaataaataaatgagtatatTAAATTAACACACATGAATTATAaagcaacttttaaaaaaaataaaaaaaggttttagagTCAAAGTTATTCATTCATAGAATGATATTgcactttttataaaaaaagatagaTGAAATCAGTTCATGTAGTTTGTTCCATTTGCTAAATTCATTCAGAGTGCAGTGTCCCGAAGAGCTTGTCCCAGTGGGTGAAGTATGGAGCGTAGTTGGACTTGAACTTCTGATGGTGGACATCATGGTGCAGAGCTCCTCCATACAGGCCAAAAGGTACCAGTCTGTGAGTGGCCCATGGCAGGTCATAGCCGCAGTGGTCCTCAACCGACAGCCACATGTTCAGCATATGGAAAAGCATCTCTGTCATAGGATGAACCCCCAGTAACATAGGATTCACAGCGGCGAAGAAGCCCAACGACAGAGTCTCCCAAGCCCCTGAGTATTCAGTGGCCAGAGCGAAGGTGGAGGTGTATTTGTGATGCACCTTATGGAAAGTGCGGTAGAGCCAAGGTACTTTGTGATGCAGAAGATGCCATACAAAGTACTGAAAGTCGAAGAGGAGCAGGCAGGCAGCAAGGTCCCAGATGACTCGCAGGAGCTCAGGTGCCATCGCCGGGTAGCTGACAGGTCTCCAGTACCAGTGCAGGACACTCAGTGGGAAGATGTACACGGCGTGGTTGTAGAGTGAGAGCGCGAGGCAGCTCCATATCATCTTCCAAGACACGCTGGTTTTCTGTTGAATCTTGTATCTCCTTATCAGTGCTACCCTAGGTGATAGGGCATCCAGAACGacaaaaggcaggcagaagCCTAGGTAGACTGTAATAGAGAACAGAACTGGGAAAAAAGGAGACCTTAGCACGGCCTCGTACTGCTGGATGCTGTCCCAAATGTACTGCGGTCCAAACATTGTCATTTCTTTTCAGTTCTTGT

Function

symbol description
ch25h Predicted to enable C-4 methylsterol oxidase activity and cholesterol 25-hydroxylase activity. Acts upstream of or within defense response to virus. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; intestine; kidney; liver; and spleen. Orthologous to human CH25H (cholesterol 25-hydroxylase).

NR:

description
PREDICTED: cholesterol 25-hydroxylase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127752 True 1169 lncRNA 0.42 2 7615868 7617213

Neighbor

gene id symbol gene type direction distance location
ifit9 LOC107669232,LOC107753434,LOC107584193 coding downstream 1501 7612135 ~ 7614367 (-)
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding downstream 3876 7609394 ~ 7611992 (-)
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding downstream 7152 7604853 ~ 7608716 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding downstream 37667 7573171 ~ 7578201 (-)
rpp30 rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207 coding downstream 61016 7552132 ~ 7554852 (-)
stambpl1 stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140 coding upstream 19630 7636843 ~ 7646791 (-)
lipf lipa,lipf,LOC107753430,LOC107584137,LOC107594160,LOC107758444 coding upstream 34535 7651748 ~ 7662731 (-)
ptenb pten,ptenb,LOC107669198,LOC107584135,LOC107594163 coding upstream 103174 7720387 ~ 7735245 (-)
papss2b papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161 coding upstream 130379 7747592 ~ 7754731 (-)
minpp1b minpp1b,LOC107669175,LOC107753454,LOC107753455 coding upstream 137644 7754857 ~ 7760517 (-)
G86325 NA non-coding downstream 18870 7592801 ~ 7596998 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding downstream 24885 7588311 ~ 7590983 (-)
G86232 NA non-coding downstream 92867 7522664 ~ 7523001 (-)
G86230 NA non-coding downstream 111407 7502577 ~ 7504461 (-)
G86210 LOC107758434,LOC107584156,LOC107669230,LOC107594152 non-coding downstream 128793 7480055 ~ 7487075 (-)
G86334 NA non-coding upstream 14183 7631396 ~ 7634556 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding upstream 17425 7634638 ~ 7636144 (-)
G86354 NA non-coding upstream 81452 7698665 ~ 7699014 (-)
G86356 NA non-coding upstream 88008 7705221 ~ 7705483 (-)
G86357 NA non-coding upstream 90647 7707860 ~ 7708194 (-)
G86203 NA other downstream 226958 7388236 ~ 7388910 (-)
G86108 NA other downstream 511650 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 944621 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1537800 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1603757 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 717191 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 894190 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 993339 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1065230 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1070285 8687498 ~ 8687570 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004620 ch25h coding NC_007123.7 CM002896.2 17042754 ~ 17043874 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_00811088_00811849 CH25H coding CI01000063 null 810881 ~ 812197 (+)