G86333 (acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715)


Basic Information

Item Value
gene id G86333
gene name acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7634638 ~ 7636144 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU127756
TATTGCAGAGCTTTATTCCTTCATGGAGTTATCATATGATATCCATACAGACTGCCTGAAAGCCGACATGCAGTTGTGTTACCTCGTAGCAATTTAACACAAAGGGGAGAATGAGCCCTGTTCCTCAACACCCTCTCCTCATCTCTGGATTCTCACTACCTCAAGGAATCTCCCAAATCTTTCATATTGGCAGCACAATCAAGCTTTTTAGCCCATTGGGAACAACACTATAATGTCATGACATAATTAAATCAGAACATTCAAACAGATGTGggcagtgcaaagacaaaacaatAGAGGGAAGTAAAGGGTACGTTCACAGTTTACAGGCTATGAAGCAATAACAGAATTAGGGGAGCAGGAGGGAGTTGGAGGTGTCTTTAGAAGCACTTGCGATGCACAATGGATGGCCCGGCCTCGTCATACTCCTGCTTGCTTATCCACATCTGCTGGAAGGTGGAGAGGGAGGCCAGGATGGAGCCACCAATCCATACTGAGTACTTGCGCTCAGGTGGGGCGATCTTGATCTTCATGGTGCTGGGGGCCAAAGCAGTGATCTCCTTCTGCATCCTGTCGGCAATGCCAGGGTACATGGTGGTACCACCAGACAACACATTGTTGGCGTAAAGGTCCTTACGGATGTCAATGTCGCATTTCATGATGCTGTTGTAAGTGGTTTCGTGGATGCCAGCAGATTCCATTCCTAACAATACGTGCAAATCAATGCATTAATACCATAGTGCTCTgaattcatcattttaaaatagaagcGAAGAAAGAGAAATGAGATATCACCGATGAAGGATGGCTGGAAGAGTGTCTCAGGGCAGCGGAACCTCTCATTGCCAATGGTGATGACCTGTCCATCAGGAAGCTCATAGCTCTTCTCCAGGGAGGAGGAAGAGGCTGCAGTGGCCATCTCATTCTCAAAATCCAGCGCCACATAACACAACTTCTCTTTGATGTCTCTGACAATTTCTCTTTCAGCTA

Function

symbol description
acta2 Acts upstream of or within heart contraction. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including cardiovascular system; gut; mesoderm; musculature system; and swim bladder. Human ortholog(s) of this gene implicated in Moyamoya disease; megacystis-microcolon-intestinal hypoperistalsis syndrome; and thoracic aortic aneurysm. Orthologous to several human genes including ACTA2 (actin alpha 2, smooth muscle).
actc1a Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1).
actc1 Enables ATP binding activity; microfilament motor activity; and myosin binding activity. Involved in actin-myosin filament sliding and heart contraction. Located in actin filament and sarcomere. Implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11.

NR:

description
PREDICTED: actin, alpha cardiac muscle 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127756 True 990 lncRNA 0.46 2 7634638 7636144

Neighbor

gene id symbol gene type direction distance location
ifit9 LOC107669232,LOC107753434,LOC107584193 coding downstream 20271 7612135 ~ 7614367 (-)
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding downstream 22646 7609394 ~ 7611992 (-)
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding downstream 25922 7604853 ~ 7608716 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding downstream 56437 7573171 ~ 7578201 (-)
rpp30 rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207 coding downstream 79786 7552132 ~ 7554852 (-)
stambpl1 stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140 coding upstream 699 7636843 ~ 7646791 (-)
lipf lipa,lipf,LOC107753430,LOC107584137,LOC107594160,LOC107758444 coding upstream 15604 7651748 ~ 7662731 (-)
ptenb pten,ptenb,LOC107669198,LOC107584135,LOC107594163 coding upstream 84243 7720387 ~ 7735245 (-)
papss2b papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161 coding upstream 111448 7747592 ~ 7754731 (-)
minpp1b minpp1b,LOC107669175,LOC107753454,LOC107753455 coding upstream 118713 7754857 ~ 7760517 (-)
G86334 NA non-coding downstream 82 7631396 ~ 7634556 (-)
G86330 ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 non-coding downstream 17425 7615868 ~ 7617213 (-)
G86325 NA non-coding downstream 37640 7592801 ~ 7596998 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding downstream 43655 7588311 ~ 7590983 (-)
G86232 NA non-coding downstream 111637 7522664 ~ 7523001 (-)
G86354 NA non-coding upstream 62521 7698665 ~ 7699014 (-)
G86356 NA non-coding upstream 69077 7705221 ~ 7705483 (-)
G86357 NA non-coding upstream 71716 7707860 ~ 7708194 (-)
G86375 NA non-coding upstream 210337 7846481 ~ 7846832 (-)
G86412 NA non-coding upstream 251822 7887966 ~ 7888246 (-)
G86203 NA other downstream 245728 7388236 ~ 7388910 (-)
G86108 NA other downstream 530420 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 963391 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1556570 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1622527 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 698260 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 875259 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 974408 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1046299 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1051354 8687498 ~ 8687570 (-)

Expression


Co-expression Network