msrb1b (msrb1b,LOC100705913)


Basic Information

Item Value
gene id msrb1b
gene name msrb1b,LOC100705913
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8105148 ~ 8106780 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU127947
CCGGAACATTATCGTCCTTTAGTTTCTCAGCTTGTCCTTGTACTTCATCCGCGCATACACTGTTTATTTCATCGACTGATCTGTGCCGAACAATGTCATTTTGTTCGTTTTTCGAGAAGGAGTATTACAAAGATCATTTTAAACCCGGTATATATGTTTGCTCTCAGTGTGGGCATCCACTCTTTTCAAGCAGATCCAAATATGAGCATTCCTCCCCATGGCCTGCCTTCACAGAGACCGTCCGAGAGGACAGTGTAACAAAACACATGGAGACCTTAACAGCCTACAAGGTTCTTTGTGGCAAGTGTGGCAACGGACTTGGCCATGAGTTTGTGAATGATGGGCCGGAGGAGGGCTTATCAcgtttttgaatatttagtcACTCGCTAAAGTTTGTCCCAAAAGATAAGGTTGATAAACAATAAGCGAGGTGAATCCGCGCTGATGAGGCTGCTGTTGCACGCACACTGGTTATGGGATGCTCAGCTCATGAAGTGGACAAGGAAAAGCCCCAAGTGGAGATCCTGTTCACAGATCTATTTTGACTGTCCTGGATGCCATAGACTAAAATAGTTGCTCTATTTTTGTACTAGTCTGCATAAGCTGATATGAGCATGTgcaagatgaatgaatgaaattgcTTGCTTATTAAAAAACAGTCTGGAATGttgctcatttaaaatggtaattGTGAACCTTCAGTAATTTCCTAAAGCAATTTACAGCACTGGTCACTATCGTgatgattataattattatttggaacaaaacaataatttcaTCATTAAATTAGCATGTTATTAATTTAGATATATCAATTCaacaattgtttttgtaattgtaattttttttaatttgtatctgccataaagacatattttaacattcacGTTTCTGTCACACATGAAGATTTGTTTTCCACTAGTAAAGtatgaatcaaataaattgtttactttattgttattattttatcaatttttttttttaccaaagaaTTTAATGAGCCAATGCTTTAGCATTTTTGTGTGCtacgcatacacacatatgcaagATGTTAATAATTGTTGATGAACAAAGAATGCCTGTAATATgctacttattttattaatgttattatattattaatttcagttttgtttaattatattattaattgtatttttgttgttgtttttttgctttttagaaataaatgtctCCTAATCGTGGGCATTTCGG
>XM_043254419.1
CGTCCTTTAGTTTCTCAGCTTGTCCTTGTACTTCATCCGCGCATACACTGTTTATTTCATCGACTGATCTGTGCCGAACAATGTCATTTTGTTCGTTTTTCGAGAAGGAGTATTACAAAGATCATTTTAAACCCGGTATATATGTTTGCTCTCAGTGTGGGCATCCACTCTTTTCAAGCAGATCCAAATATGAGCATTCCTCCCCATGGCCTGCCTTCACAGAGACCGTCCGAGAGGACAGTGTAACAAAACACATGGAGACCTTAACAGCCTACAAGGTTCTTTGTGGCAAGTGTGGCAACGGACTTGGCCATGAGTTTGTGAATGATGGGCCGGAGGAGGGCTTATCAcgtttttgaatatttagtcACTCGCTAAAGTTTGTCCCAAAAGATAAGGTTGATAAACAATAAGCGAGGTGAATCCGCGCTGATGAGGCTGCTGTTGCACGCACACTGGTTATGGGATGCTCAGCTCATGAAGTGGACAAGGAAAAGCCCCAAGTGGAGATCCTGTTCACAGATCTATTTTGACTGTCCTGGATGCCATAGACTAAAATAGTTGCTCTATTTTTGTACTAGTCTGCATAAGCTGATATGAGCATGTgcaagatgaatgaatgaaattgcTTGCTTATTAAAAAACAGTCTGGAATGttgctcatttaaaatggtaattGTGAACCTTCAGTAATTTCCTAAAGCAATTTACAGCACTGGTCACTATCGTgatgattataattattatttggaacaaaacaataatttcaTCATTAAATTAGCATGTTATTAATTTAGATATATCAATTCaacaattgtttttgtaattgtaattttttttaatttgtatctgccataaagacatattttaacattcacGTTTCTGTCACACATGAAGATTTGTTTTCCACTAGTAAAGtatgaatcaaataaattgtttactttattgttattattttatcaatttttttttttaccaaagaaTTTAATGAGCCAATGCTTTAGCATTTTTGTGTGCtacgcatacacacatatgcaagATGTTAATAATTGTTGATGAACAAAGAATGCCTGTAATATgctacttattttattaatgttattatattattaatttcagttttgtttaattatattattaattgtatttttgttgttgtttttttgctttttagaaataaatgtctCCTAATCGTGGGCATTTCGGCACCTTT

Function

symbol description
msrb1b Predicted to enable L-methionine-(R)-S-oxide reductase activity and peptide-methionine (R)-S-oxide reductase activity. Orthologous to human MSRB1 (methionine sulfoxide reductase B1).

NR:

description
PREDICTED: methionine-R-sulfoxide reductase B1-A-like

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030091 protein repair biological_process
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127947 True 1218 lncRNA 0.35 4 8105148 8106773
XM_043254419.1 False 1213 mRNA 0.35 4 8105160 8106780

Neighbor

gene id symbol gene type direction distance location
neurl2 neurl2,LOC107669209,LOC107734228,LOC107699858,LOC107594180 coding upstream 112 8102699 ~ 8105036 (+)
rnf151 rnf151,LOC107584225,LOC107669188,LOC107594218,LOC107734173,LOC107731429,LOC107699857 coding upstream 15821 8086091 ~ 8089327 (+)
noxo1b LOC107669189,LOC107734176,LOC107584122,LOC107699855,LOC107731427,LOC107594217 coding upstream 19544 8082634 ~ 8085604 (+)
foxl3 si:dkey-7e14.3,LOC107731394,LOC107594215,LOC107669190,LOC107734180,LOC107584227,LOC108431962 coding upstream 52762 8049576 ~ 8052386 (+)
fam20cb fam20c,fam20cb,LOC107669229,LOC107734234,LOC107699871,LOC105888715,LOC107731385 coding upstream 59109 8009380 ~ 8046039 (+)
meiob LOC107584223,LOC107669206,LOC107734178,LOC107731419,LOC107594203 coding downstream 406 8107186 ~ 8110679 (+)
mlst8 mlst8,LOC107699873 coding downstream 4147 8110927 ~ 8115043 (+)
grid2ipb grid2ip,LOC107584118,LOC107734213,LOC107669204,LOC107731383,LOC107699877 coding downstream 24065 8130845 ~ 8154082 (+)
lcmt1 lcmt1,LOC107734249,LOC107584116,LOC107669194,LOC107731431,LOC107594185 coding downstream 73224 8180004 ~ 8185974 (+)
aqp8a.1 LOC107584217,LOC107734162,LOC107669195,LOC107692108,LOC107731388,LOC107594225 coding downstream 80773 8187553 ~ 8190280 (+)
G86460 NA non-coding upstream 44972 8056931 ~ 8060176 (+)
G86374 NA non-coding upstream 258286 7846558 ~ 7846862 (+)
G86268 NA non-coding upstream 381287 7720392 ~ 7723861 (+)
G86283 NA non-coding upstream 385865 7718984 ~ 7719283 (+)
G86275 NA non-coding upstream 403349 7701343 ~ 7701799 (+)
G86540 NA non-coding downstream 91314 8198094 ~ 8198410 (+)
G86536 NA non-coding downstream 96803 8203583 ~ 8204143 (+)
LOC122355856 NA non-coding downstream 97365 8204145 ~ 8206748 (+)
G86577 NA non-coding downstream 185063 8291843 ~ 8292062 (+)
G86593 NA non-coding downstream 237889 8344669 ~ 8344968 (+)
LOC122355675 NA other upstream 261065 7815823 ~ 7844083 (+)
G86143 NA other upstream 796919 7307924 ~ 7308229 (+)
G86142 NA other upstream 800300 7303138 ~ 7304848 (+)
G86029 NA other upstream 1582577 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1663622 6440821 ~ 6441526 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 89184 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 729668 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1178883 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 1549889 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1650467 9757247 ~ 9767228 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_01533946_01534527 MSRB1B misc CI01000063 null 1533853 ~ 1535375 (+)