hbbe2 (hbbe2,LOC107734191,LOC105910203)


Basic Information

Item Value
gene id hbbe2
gene name hbbe2,LOC107734191,LOC105910203
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8195964 ~ 8197904 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU128039
GTCTAGTGATAAGAAAGAGTCGTTTTGAATGTGCGTATGCGCGTGAGATAACCAGCTGCTGATATCGCGAGAGCAATTCATAGTCTCTGAAAGTCACATTTACCAAagatttaaacagtttaatgaTGTATCCCGCAATGATATGCTTATGCTTTTATACGCAAATGCGTCGTCCTCGTCTATGCCGATCGTCCTTACTAAGTGTATCTGTG
>XM_043253163.1
CTACGTGAGCGGAGAGTCTGTGTCTAGTGATAAGAAAGAGTCGTTTTGAATGTGCGTATGCGCGTGAGATAACCAGCTGCTGATATCGCGAGAGCAATTCATAGTCTCTGAAAGTCACATTTACCAAagatttaaacagtttaatgaTGTATCCCGCAATGATATGCTTATGCTTTTATACGCAAATGCGTCGTCCTCGTCTATGCCGATCGTCCTTACTAAGTGTATCTGTGCTATGTTACAagtgttttatcaaaatgtcaTCCAACTTCTAGACTCTGCAAAATCACTAACAGTTACATCTTAGAGTCCTGCCCACCAGAAACTCCAGCCAATCAAACGAGTCCTCTCGTACTGGCCATGCAACCCGATGACATAAATAGCGTCGAACAGAGTGGAAAGGTATGATTCTTATTCCTAAAGGAGGACAAAGATCATAACCTGACGACATGGTTGTGTGGACCGACCAGGAGCGCGCCTGCATCCAGGACATTTTCAGCAAGCTGAATTACGAGGAGGCCGGCCCCAAAGCTTTGCAGAGGGCCTTGATTGTGTATCCCTGGACTCAGCGGTACTTCGCAAGTTTTGGGAACCTGTACAATGCCGAGGCCATCATGTCTAACCCAAGGGTGGCGGCCCACGGAATTGTTGTGCTCCACGGCCTCGACAGAGCCATGAAGAACATGGATGACATCAAGAACACCTATGCCGAACTGAGCGTGCTGCACTCCGACAAATTGCACGTGGATCCTGACAACTTCAGGCTGCTGGCCGACTGCCTGACCATTGTGATTGCGGGGACTATGGGCACCTCTTTCACAGCTGACGTGCAGGCGGCCTGGCAGAAGTTCCTCGCTGTTGTCGTCTCTGCTCTGCGCAGACAGTATCATTAAAACCTCGAACATTTGGGGGAAAGCATTGATTGTTCTCTAACGCAATAAAGAGGAATTGATGTGCATCTGAGCCGTGGTTAAACTGTCCATTGTGCGAGTATCGGGTATAATTCAACTGAAAACTCATGATTCTGTCAAAAGGCTCCAGGGATTTATGACAAAATTGTCAATTCATACAAACAAGTAAACGAAACACAAGGCTTAAGTTTAAAAAACGGGTCATTGGAACGCTTCAATAGAGCATGTTTATTGGATTAATTAGACTTAACCGAACAAATGAAGATTGCTGCAGGATGCTAGGCGGCACTACGCCTCTGATAAACTAAAGAGTGTAAGTGCACTTAAGAGTTTTAATTGAAATGGTAACCGATATATAAATgcgtaataaattaaatgaatggtCGCCGTGATTTTGCTAAGTAAaacatgatcctggatcaacatttttgttgatcCTTTAACATACTGcccaaaaatatagacttatcgCAAGGGTGAAGAAGCacctgatcataagcctaaaacagatatttcctgaaaaagtATCCCTCGAttctgattgattgattggaaTGTTGATCCAGTAACATCTTGTACTTGGTAACATCATGCTCACCAATATGGGACAGGTTATATGAAAAGATGCTGGCCTTATGTTTGAGGACTGATAAAGGTTCAGTGTTTCCATTGCAAATcctgctttatatatattaattaacttatctttttttatagCCTAGGTCTAGGGTGGAGCAATGAATTGGCAGTAAACTTAAAGAGGGTGTCTGCTTGGATACAATTACACCCCCGAAAAGATCTAGTATGTTTTCTAACCACACTAGAAGAAAGAATGTTAT

Function

symbol description
hbbe2 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to act upstream of or within oxygen transport. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Is expressed in hematopoietic cell; hematopoietic system; posterior lateral plate mesoderm; and vasculature. Human ortholog(s) of this gene implicated in sickle cell anemia. Orthologous to human HBE1 (hemoglobin subunit epsilon 1).

NR:

description
PREDICTED: hemoglobin subunit beta-2-like isoform X2

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128039 False 212 lncRNA 0.41 1 8195985 8196196
XM_043253163.1 True 1750 mRNA 0.43 3 8195964 8197904

Neighbor

gene id symbol gene type direction distance location
aqp8a.2 aqp8a.2,aqp8,LOC107734187,LOC107692107,LOC107594226,LOC107669187,LOC107731382 coding upstream 2601 8191318 ~ 8193363 (+)
aqp8a.1 LOC107584217,LOC107734162,LOC107669195,LOC107692108,LOC107731388,LOC107594225 coding upstream 5684 8187553 ~ 8190280 (+)
lcmt1 lcmt1,LOC107734249,LOC107584116,LOC107669194,LOC107731431,LOC107594185 coding upstream 9990 8180004 ~ 8185974 (+)
grid2ipb grid2ip,LOC107584118,LOC107734213,LOC107669204,LOC107731383,LOC107699877 coding upstream 41882 8130845 ~ 8154082 (+)
mlst8 mlst8,LOC107699873 coding upstream 80921 8110927 ~ 8115043 (+)
hbbe3 hbbe3,LOC107734188,LOC107669171 coding downstream 4041 8201945 ~ 8202752 (+)
rhbdf1b LOC107734220,LOC107731426,LOC107584114,LOC107692086,LOC107669219,LOC107594190 coding downstream 17662 8215566 ~ 8243257 (+)
ubald1a ubald1a,ubald1,LOC107734217,LOC107669224,LOC107731421,LOC107554033 coding downstream 81164 8279068 ~ 8288769 (+)
LOC122355370 NA coding downstream 94832 8292736 ~ 8303541 (+)
shisa9a shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107692077,LOC107731434 coding downstream 163281 8361185 ~ 8388328 (+)
G86460 NA non-coding upstream 135788 8056931 ~ 8060176 (+)
G86374 NA non-coding upstream 349102 7846558 ~ 7846862 (+)
G86268 NA non-coding upstream 472103 7720392 ~ 7723861 (+)
G86283 NA non-coding upstream 476681 7718984 ~ 7719283 (+)
G86275 NA non-coding upstream 494165 7701343 ~ 7701799 (+)
G86540 NA non-coding downstream 190 8198094 ~ 8198410 (+)
G86536 NA non-coding downstream 5679 8203583 ~ 8204143 (+)
LOC122355856 NA non-coding downstream 6241 8204145 ~ 8206748 (+)
G86577 NA non-coding downstream 93939 8291843 ~ 8292062 (+)
G86593 NA non-coding downstream 146765 8344669 ~ 8344968 (+)
msrb1b msrb1b,LOC100705913 other upstream 89184 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 351881 7815823 ~ 7844083 (+)
G86143 NA other upstream 887735 7307924 ~ 7308229 (+)
G86142 NA other upstream 891116 7303138 ~ 7304848 (+)
G86029 NA other upstream 1673393 6521829 ~ 6522571 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 638544 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1087759 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 1458765 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1559343 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1666910 9864814 ~ 9874515 (+)

Expression


Co-expression Network