G86858


Basic Information

Item Value
gene id G86858
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8855673 ~ 8856110 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU128518
taggtttttattttaacaaggtATGCCAATCTTTTTTCGCGTAAtaataaaggaaattaaaacaTCTAGCAAAATTATTTGCTTGGAGAACAGGCAACTGAAATGAACAATTAAACagagaataaatacaaaagaaattGATACATGTCTAATGATTCGTAAttagaaaaactcaaaactcagATCTAGTGTACAGTGTAATTCGTGCATAATATCATAAATCAACAGTTCATTAAAATGACTGCGAGAACATTCGAAGCTCAAATTAATGCTAAGTTTCCCTTTTTGAAAGAACAGAAAATACAGACGAACGGTGCTCATTCACAGGCCAGTTTGCCATCGAACGAAGACAGAGTTATGGCAAATGCCTGAAGAGCACACATGGGAAAGCTGTAGTCCATGGAAAACACATCTTCAGCTACCCGCCCAAACTGCATC

Function

GO:

id name namespace
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function
GO:0098772 molecular function regulator molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU128518 True 438 lncRNA 0.35 1 8855673 8856110

Neighbor

gene id symbol gene type direction distance location
snx11 snx11,LOC107734201,LOC107584079,LOC107660856,LOC106589286 coding downstream 3439 8845111 ~ 8852234 (-)
LOC122355256 slc16a6a,LOC107554067,LOC107721990,LOC107692048 coding downstream 18416 8832082 ~ 8837257 (-)
rgs9b rgs9b,LOC107660859,LOC107584086,LOC107734240,LOC107692097,LOC107709642,LOC108444257,LOC107554020 coding downstream 34611 8809082 ~ 8821062 (-)
mrtfab LOC107692050,LOC107734192,LOC107660860,LOC107584087,LOC107709647 coding downstream 47033 8781679 ~ 8808640 (-)
xrcc6 xrcc6,LOC107734244,LOC107584091,LOC107709651,LOC107554059 coding downstream 112067 8738942 ~ 8743606 (-)
snf8 snf8,LOC107554070,LOC107692042,LOC107734219,LOC107584075,LOC107660854 coding upstream 13955 8870065 ~ 8872539 (-)
nme2a nme2a,LOC107574626,LOC107558983,LOC107660852,LOC107734222 coding upstream 87001 8943111 ~ 8946818 (-)
eme1 eme1,LOC107584393,LOC107723632,LOC107705828 coding upstream 418255 9274365 ~ 9281289 (-)
nsfb nsfb,LOC107657277,LOC107665886,LOC108430134,LOC108273757 coding upstream 668176 9524286 ~ 9543828 (-)
arhgef15b LOC107657276,LOC107733470,LOC107665871,LOC107723635,LOC107556583,LOC107584389 coding upstream 689157 9545267 ~ 9558906 (-)
G86857 NA non-coding downstream 132 8855329 ~ 8855541 (-)
G86856 NA non-coding downstream 2416 8852945 ~ 8853257 (-)
G86854 arsg,LOC107734203,LOC107660857,LOC107554066,LOC107692046 non-coding downstream 11899 8843387 ~ 8843774 (-)
G86853 NA non-coding downstream 14518 8840814 ~ 8841155 (-)
G86852 arsg,LOC107734203,LOC107660857 non-coding downstream 17061 8838351 ~ 8838612 (-)
G86862 NA non-coding upstream 7331 8863441 ~ 8864263 (-)
G86861 LOC107734218,LOC107660853,LOC107584076 non-coding upstream 11782 8867892 ~ 8869062 (-)
G86916 NA non-coding upstream 443569 9299679 ~ 9299899 (-)
G87019 NA non-coding upstream 717524 9573634 ~ 9574525 (-)
G87034 NA non-coding upstream 775934 9632044 ~ 9635117 (-)
trnar-ccu_66 NA other downstream 168103 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 168125 8682443 ~ 8687548 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other downstream 243228 8610552 ~ 8612445 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 342408 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 495681 8334404 ~ 8359992 (-)
LOC122355288 LOC107660874 other upstream 19507 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 455543 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other upstream 625449 9481559 ~ 9489312 (-)
cript cript,LOC107582781,LOC107728714 other upstream 2148896 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 2186778 11042888 ~ 11045889 (-)

Expression


Co-expression Network