mfsd8 (mfsd8,LOC107738985,LOC107556570)


Basic Information

Item Value
gene id mfsd8
gene name mfsd8,LOC107738985,LOC107556570
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 9656669 ~ 9664139 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU128675
TCGGAGGCCTGATTCTCATATTTGCTGGTTTCTTTATCTTGTTGCCATGGGGAAATCAATATCCTAAAATACAGTGGGCAGCCATTGAGAATAACACCACACCAGAAATACGACTGGCACACACTCCACCCTCAAACGCTTCTCTGGAGCCCACTGGATGTCCGTCTGAACAGACCTGGTGCTTGTTTACCCCTGTAATTCATCTCGCACAGTACATTGCCTCTGACATCCTGATTGGAGTGGGTTACCCCACATGCAACGTAATGTCCTACACTTTATACTCAAAGATAATAGGCCCCAAACCACAGGGGGTTTACATGGGCTGGCTGACAGCATCAGGAAGTGGAGCGCGGACCCTCGGGCCTGTGTTTGTTTCTCACGTCTACACCATCCTGGGACCCCGATGGGCCTTCAGCGTCATATGTGGCATAGTATTAGCTGCAGTTGTTCTTCTGAGTGCCATGTACAAACGACTTATCGCCTTTTCCATACGCCACGGAAGGATAGAAGATGAAAGTCATGACTGACAGGTGCCTCCACCAACTACTAATGGACAGTTCGGAGAAGTGGGCTTGACTTAAATATggaaatcgtttttttttaaatagataacTGTATAAAGTGTGGAGCTTTTCAAGCATAATCATGGTTCTGAAGTAGTAAATATCTTGATATGTTGAAGtataattttcctttttagcTAAACTGTGAACCACTTGTAGCAGCATGACATGGACTGACACcatataaaatcaaacaatGGCACACTCTAAAAAGTCCCATGTGAACGGCAGTATTAATGATTTGGCAGCTCAGTGGGTTATGAAGCATCGCAGATGACTACTGTGCATAATGGATTatgattgttttggttttaataatctattttattaaCTTGAATTTCTGGCGTTGTAAAGTATTAACATGTGTTGGATGATTTACTCTCATTTGCATTGATAGGACAGGCTTGACACAGATGTTgaagtttcttttctttttaataacacTAAGCTTAAAAAGCACACAGGGTGCCGAGAATCACTTGAGTTTTTGGTGATTATAAGCTGCAAGACCACTGTATTTTAAATCCagcttttgttctgttttttgaGTTAAAGCACAACATTTCCTGAGAAATGGCAATAAATCgttcctttaatgtttttaaaaaaagtgaggCATGACATGCtttccagcttttttttttgctcaagtttctttaaatgcattaaaaatgatatgTTTCAACAAGAAATAATTTTTGTCCGTCACATCCATTTCAGTGGTTGTATTCAAACATTTTATCCACAGATCGTCACATAAGATGGAACAAAGCTTCTTTGAAATGTTATTCCAGCCCGTGGATGGTTTGTTCACACAACGTGTCTATTGTACTGGGAAGGTTGTAGTGTAGGATGAGCTTGTGACAAAAACAGAATGCAAGAAGACAACTATGTACTTACACAACAACCTTCTTGTACATCAATAACCCATTTCACACTCTCTGAGCTCACTTTTTCTGATCATGATGCAGTTTTCAGCAGTCACAAATCCACTGTGAACAAGCTCAAGTAACCGttcttttcctcttcttcttaGTTGTGAATTTGTCAGCAATGTGTTTTAACAGGCCTGGAGCAGCATGACCACCTGGCACAGTCATTCTGTTGACAAAAGTGACAAGCTCTAAGTTTGTGTTTTTGGCTGCCGCAGTTGAAACATCCAGTTTGGCTCGGACCACAAGGGTGATCGGGGAGAGCGCAGTGACCACATGAGGAACAATGACGCCACGCTGGAGAGAGAGTAAGAGcggaaagaaaatgagaaagagGATGAGAAATAACCACATTAGCAAACATCATCTTAAATGAATTCAGATTTGCTTACAAGGCTTCACACATCGTCCACATTCATCACAGTGCCTCCATTCTCGCCCATCCTGTGTAATAAATAGGGAAATGTCAGTTAATCTGCTCCTATTCCATACATTGACTAGGACATAAGCATTTACCTTAGATGGGCATTTGTCACACTTTGGGCAGTGTTTGTTTCCTGCTGACACATGCCT
>TU128677
TCGGAGGCCTGATTCTCATATTTGCTGGTTTCTTTATCTTGTTGCCATGGGGAAATCAATATCCTAAAATACAGTGGGCAGCCATTGAGAATAACACCACACCAGAAATACGACTGGCACACACTCCACCCTCAAACGCTTCTCTGGAGCCCACTGGATGTCCGTCTGAACAGACCTGGTGCTTGTTTACCCCTGTAATTCATCTCGCACAGTACATTGCCTCTGACATCCTGATTGGAGTGGGTTACCCCACATGCAACGTAATGTCCTACACTTTATACTCAAAGATAATAGGCCCCAAACCACAGGGGGTTTACATGGGCTGGCTGACAGCATCAGGAAGTGGAGCGCGGACCCTCGGGCCTGTGTTTGTTTCTCACGTCTACACCATCCTGGGACCCCGATGGGCCTTCAGCGTCATATGTGGCATAGTATTAGCTGCAGTTGTTCTTCTGAGTGCCATGTACAAACGACTTATCGCCTTTTCCATACGCCACGGAAGGATAGAAGATGAAAGTCATGACTGACAGGTGCCTCCACCAACTACTAATGGACAGTTCGGAGAAGTGGGCTTGACTTAAATATggaaatcgtttttttttaaatagataacTGTATAAAGTGTGGAGCTTTTCAAGCATAATCATGGTTCTGAAGTAGTAAATATCTTGATATGTTGAAGtataattttcctttttagcTAAACTGTGAACCACTTGTAGCAGCATGACATGGACTGACACcatataaaatcaaacaatGGCACACTCTAAAAAGTCCCATGTGAACGGCAGTATTAATGATTTGGCAGCTCAGTGGGTTATGAAGCATCGCAGATGACTACTGTGCATAATGGATTatgattgttttggttttaataatctattttattaaCTTGAATTTCTGGCGTTGTAAAGTATTAACATGTGTTGGATGATTTACTCTCATTTGCATTGATAGGACAGGCTTGACACAGATGTTgaagtttcttttctttttaataacacTAAGCTTAAAAAGCACACAGGGTGCCGAGAATCACTTGAGTTTTTGGTGATTATAAGCTGCAAGACCACTGTATTTTAAATCCagcttttgttctgttttttgaGTTAAAGCACAACATTTCCTGAGAAATGGCAATAAATCgttcctttaatgtttttaaaaaaagtgaggCATGACATGCtttccagcttttttttttgctcaagtttctttaaatgcattaaaaatgatatgTTTCAACAAGAAATAATTTTTGTCCGTCACATCCATTTCAGTGGTTGTATTCAAACATTTTATCCACAGATCGTCACATAAGATGGAACAAAGCTTCTTTGAAATGTTATTCCAGCCCGTGGATGGTTTGTTCACACAACGTGTCTATTGTACTGGGAAGGTTGTAGTGTAGGATGAGCTTGTGACAAAAACAGAATGCAAGAAGACAACTATGTACTTACACAACAACCTTCTTGTACATCAATAACCCATTTCACACTCTCTGAGCTCACTTTTTCTGATCATGATGCAGTTTTCAGCAGTCACAAATCCACTGTGAACAAGCTCAAGTAACCGttcttttcctcttcttcttaGTTGTGAATTTGTCAGCAATGTGTTTTAACAGGCCTGGAGCAGCATGACCACCTGGCACAGTCATTCTGTTGACAAAAGTTTGAAACATCCAGTTTGGCTCGGACCACAAGGGTGATCGGGGAGAGCGCAGTGACCACATGAGGAACAATGACGCCACGCTGGAGAGAGAGTAAGAGcggaaagaaaatgagaaagagGATGAGAAATAACCACATTAGCAAACATCATCTTAAATGAATTCAGATTTGCTTACAAGGCTTCACACATCGTCCACATTCATCACAGTGCCTCCATTCTCGCCCATCCTGTGTAATAAATAGGGAAATGTCAGTTAATCTGCTCCTATTCCATACATTGACTAGGACATAAGCATTTACCTTAGATGGGCATTTGTCACACTTTGGGCAGTGTTTGTTTCCTGCTGACACATGCCT
>XM_043253393.1
CGCGGATATTTACTGTTTCTCACTGTTCACGTGTGACAACGTTCAGATGATTCGAAGTTTGCGCTGAATCAACAACACCAATGGACTTTAGACCGCGCGTGCGAATCACTCTTTAACACTACTGTGCCTATAACAGCTAAAATGGGAGTATTACACAAAGATCTAATTGCGTTTTCTACTTATCTGTTGTGCAAGTCTACGCAGCTTGCAGTCAAGTTAACTTGATTATAAAGAGCATGTCAATGTAAAGAGCTGACCTTCAATGAACCGAGTCTTGCCGTCGTTTTCGCTAGCTGCTTAATCACTAATAATGTCTCTTGTGGAGTCTGACGAAAACACTCCGCTTCTCAGAGGCGATATCACAAGtGGTGGGGATGCAGACAGAAGCCGCTGGAGGTCCATCAGGGTCATGTACTTCACTATGTTCCTTAGCAGCGTTGGTTTTACGATTGTAATCACTTCCATATGGCCCTATCTGAAAAAAGTTGATGAAAATGCAGATGCCAGTTTCTTGGGATGGGTGGTTGCTGCGTATAGTTTGGGTCAGATGGTGGCCTCACCACTCTTTGGACTGTGGTCCAATCACAGGCCTCGACGAGAGCCTCTAGTCTGCTCTATATTCATCAATGTCTCTGCTAACATTTACTACGCCTATGTCTACCTACCTCCTTCACACAAAGAAATTCACATGCTTTTGGCTCGTACGTTTGTGGGCATTGGAGCAGGTAATGTAGCTGTTGTGAGGTCCTATGTGGCTGGTGCCACTTCCCTGAAGGAGAGAACCAGTGCAATGGCTAACATGAGTGCCTGTCAGGCTCTCGGCTTCATTCTTGGCCCAGCCCTACAGGCTGTTTTGTCATTCATTGGAGAGTCTGGCTTCAGTGTGAAAGCCATCCAGCTTCAGGTTAATATGTACACCGCTCCAGCGCTGTTGGCAGCCTGCTTCGGGATCATTAACATTCTGCTGGTTATATTAGTCTTGAGggaGCACTGTGTGGATGACCATGGAAATCATATCCGTGCAATTAACTACACCTCAGAAGaGCAAGTAGATGTGGCTCCTGAGGTTGAAGGTGATATCGATCAGATCGCAGTGTTCACATCTAATGTCCTTTTCTTTGTCATTCTCttcatttttgctgtgtttgaaACTATATCTACTCCTTTATCAATGGACATGTTTGCATGGACGAGGAAAGAAGCTGTTTTGTACAATGGTATCATATTGGCGGCCATTGGTTTTGAGTCCATCCTCATCTTCCTGGTTGTAAAAGTAGTCTCAGCacgATCGCCACTGCTGCTCGGAGGCCTGATTCTCATATTTGCTGGTTTCTTTATCTTGTTGCCATGGGGAAATCAATATCCTAAAATACAGTGGGCAGCCATTGAGAATAACACCACACCAGAAATACGACTGGCACACACTCCACCCTCAAACGCTTCTCTGGAGCCCACTGGATGTCCGTCTGAACAGACCTGGTGCTTGTTTACCCCTGTAATTCATCTCGCACAGTACATTGCCTCTGACATCCTGATTGGAGTGGGTTACCCCACATGCAACGTAATGTCCTACACTTTATACTCAAAGATAATAGGCCCCAAACCACAGGGGGTTTACATGGGCTGGCTGACAGCATCAGGAAGTGGAGCGCGGACCCTCGGGCCTGTGTTTGTTTCTCACGTCTACACCATCCTGGGACCCCGATGGGCCTTCAGCGTCATATGTGGCATAGTATTAGCTGCAGTTGTTCTTCTGAGTGCCATGTACAAACGACTTATCGCCTTTTCCATACGCCACGGAAGGATAGAAGATGAAAGTCATGACTGACAGGTGCCTCCACCAACTACTAATGGACAGTTCGGAGAAGTGGGCTTGACTTAAATATggaaatcgtttttttttaaatagataacTGTATAAAGTGTGGAGCTTTTCAAGCATAATCATGGTTCTGAAGTAGTAAATATCTTGATATGTTGAAGtataattttcctttttagcTAAACTGTGAACCACTTGTAGCAGCATGACATGGACTGACACcatataaaatcaaacaatGGCACACTCTAAAAAGTCCCATGTGAACGGCAGTATTAATGATTTGGCAGCTCAGTGGGTTATGAAGCATCGCAGATGACTACTGTGCATAATGGATTatgattgttttggttttaataatctattttattaaCTTGAATTTCTGGCGTTGTAAAGTATTAACATGTGTTGGATGATTTACTCTCATTTGCATTGATAGGACAGGCTTGACACAGATGTTgaagtttcttttctttttaataacacTAAGCTTAAAAAGCACACAGGGTGCCGAGAATCACTTGAGTTTTTGGTGATTATAAGCTGCAAGACCACTGTATTTTAAATCCagcttttgttctgttttttgaGTTAAAGCACAACATTTCCTGAGAAATGGCAATAAATCgttcctttaatgtttttaaaaaaagtgaggCATGA

Function

symbol description
mfsd8 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in neuronal ceroid lipofuscinosis 7. Orthologous to human MFSD8 (major facilitator superfamily domain containing 8).

NR:

description
major facilitator superfamily domain-containing protein 8

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12307 MSFD8, CLN7; MFS transporter, ceroid-lipofuscinosis neuronal protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
TU128675 False 2068 lncRNA 0.41 4 9661227 9664139
TU128677 False 2033 lncRNA 0.41 4 9661227 9664139
XM_043253393.1 True 2485 mRNA 0.43 12 9656669 9662962

Neighbor

gene id symbol gene type direction distance location
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding upstream 3283 9648751 ~ 9653386 (+)
capgb capgb,LOC107733451,LOC107657288,LOC107665882,LOC107556576,LOC108430072 coding upstream 11908 9636473 ~ 9644761 (+)
polr2a polr2a,LOC107733452,LOC107584383,LOC107556578,LOC107738966 coding upstream 21552 9622803 ~ 9635117 (+)
hdlbpb hdlbpb,LOC107733459,LOC107657280,LOC107584388,LOC108430121,LOC108273755 coding upstream 80949 9559680 ~ 9575720 (+)
wnt3 wnt3,LOC107584390,LOC107556586,LOC107723638,LOC107665892,LOC108273758,LOC100707095 coding upstream 135007 9498576 ~ 9521662 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding downstream 1213 9665352 ~ 9669102 (+)
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding downstream 7382 9671521 ~ 9673314 (+)
LOC122355282 shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140 coding downstream 110233 9774372 ~ 9780670 (+)
LOC122355261 NA coding downstream 213477 9877616 ~ 9881012 (+)
jcada si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409 coding downstream 843704 10507843 ~ 10516992 (+)
G86984 NA non-coding upstream 1392 9654959 ~ 9655277 (+)
G86981 NA non-coding upstream 34317 9619682 ~ 9622352 (+)
LOC122355291 NA non-coding upstream 40033 9610293 ~ 9616636 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding upstream 55987 9596293 ~ 9600682 (+)
G86943 NA non-coding upstream 169490 9481585 ~ 9487179 (+)
G87094 NA non-coding downstream 295599 9959738 ~ 9959969 (+)
G87095 NA non-coding downstream 296508 9960647 ~ 9960958 (+)
LOC122355662 NA non-coding downstream 414329 10078468 ~ 10098941 (+)
G87181 NA non-coding downstream 1225279 10889418 ~ 10889625 (+)
LOC122355308 NA non-coding downstream 1252047 10916186 ~ 10939829 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other upstream 349838 9285663 ~ 9306831 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other upstream 804220 8836448 ~ 8852449 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 1458765 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 1549889 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 1812586 7815823 ~ 7844083 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 93108 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 200675 9864814 ~ 9874515 (+)
LOC122355255 NA other downstream 218894 9883033 ~ 9899001 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other downstream 817353 10481492 ~ 10496277 (+)
LOC122355633 rhoq other downstream 833286 10497425 ~ 10499698 (+)

Expression


Co-expression Network