LOC122355662


Basic Information

Item Value
gene id LOC122355662
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10078468 ~ 10098941 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU128850
TTTCTCTTCATTTCAAATCCCTGTCGTGGCAGCACGGGCAAGGCAGAGGACTTTTCTCCCCTTCAAACTAAGGGGAAAACCCACCACCGAGAGCCCAGTGCACGTCCCAAAGAGCGACCGGAGGACTTTCGGAGGAGGAAACAGTAGTTTGAAGGCACGCCGCGGTGGTATCGGCTCGCTGTGTGCACTCAGTGTCTCCACGCTTGCACTTGGATACGCGAAGCAGGACGTTTTCACTTATCCGCGACTCGCAGGATCCCCGCGGTCTCCCTGAAACCCGCCAAACGTCCGCACGAACAAATTCTCCTATCGGATGTGTACGGTCCATTCTGCCTCTAGACCGGCTTCTGCTTTCAAGATGCATCCTCTTCATTCTAAGGTGTAAATAGGAGAGATTGAATCACTGGAAGACAGGCACTTTCAGGCAAAGG
>XR_006252232.1
AGTGTCTCCACGCTTGCACTTGGATACGCGAAGCAGGACGTTTTCACTTATCCGCGACTCGCAGGATCCCCGCGGTCTCCCTGAAACCCGCCAAACGTCCGCACGAACAAATTCTCCTATCGGATGTGTACGGTCCATTCTGCCTCTAGACCGGCTTCTGCTTTCAAGATGCATCCTCTTCATTCTAAGGTGTAAATAGGAGAGATTGAATCACTGGAAGACAGGCACTTTCAGGCAAAGTTCGGTGTCTGTTCAACATCAGACAGAAGCCCTGCAGCTGTctgcagaaatattacagcttgAGCTCGCACAAGCTCCCTCTGGCCATCTCTTCAGTTGGGGCTTGCTGAAGAAAGTGGGCTGTGCTCTCTCAAACATTGGGATTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128850 True 431 lncRNA 0.54 2 10078468 10097980
XR_006252232.1 False 386 lncRNA 0.51 3 10078658 10098941

Neighbor

gene id symbol gene type direction distance location
LOC122355261 NA coding upstream 197456 9877616 ~ 9881012 (+)
LOC122355282 shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140 coding upstream 297798 9774372 ~ 9780670 (+)
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding upstream 405154 9671521 ~ 9673314 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding upstream 409366 9665352 ~ 9669102 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding upstream 425082 9648751 ~ 9653386 (+)
jcada si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409 coding downstream 408902 10507843 ~ 10516992 (+)
psme4b psme4b,LOC107749369,LOC107584369,LOC107686372,LOC107657478,LOC108426507 coding downstream 486141 10585082 ~ 10609150 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding downstream 515252 10614193 ~ 10620486 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding downstream 608957 10707898 ~ 10864445 (+)
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding downstream 789192 10888133 ~ 10897280 (+)
G87095 NA non-coding upstream 117510 9960647 ~ 9960958 (+)
G87094 NA non-coding upstream 118499 9959738 ~ 9959969 (+)
G86984 NA non-coding upstream 423191 9654959 ~ 9655277 (+)
G86981 NA non-coding upstream 456116 9619682 ~ 9622352 (+)
LOC122355291 NA non-coding upstream 461832 9610293 ~ 9616636 (+)
G87181 NA non-coding downstream 790477 10889418 ~ 10889625 (+)
LOC122355308 NA non-coding downstream 817245 10916186 ~ 10939829 (+)
LOC122355200 NA non-coding downstream 855717 10954658 ~ 10955795 (+)
G87207 LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045 non-coding downstream 882337 10981278 ~ 10987710 (+)
G87210 NA non-coding downstream 897789 10996730 ~ 10996994 (+)
LOC122355255 NA other upstream 179467 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 203953 9864814 ~ 9874515 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other upstream 311240 9757247 ~ 9767228 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other upstream 414329 9656669 ~ 9664139 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other upstream 771637 9285663 ~ 9306831 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other downstream 382551 10481492 ~ 10496277 (+)
LOC122355633 rhoq other downstream 398484 10497425 ~ 10499698 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other downstream 424202 10523143 ~ 10582545 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 1595903 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 1783210 11882151 ~ 11884097 (+)

Expression


Co-expression Network