LOC122355192 (opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131)


Basic Information

Item Value
gene id LOC122355192
gene name opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10481492 ~ 10496277 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU128881
CAGGCACATGGTTACTGGCATTGACAaactcatcacacacacacacacacacacacatgttgggcGCAGTTGACAGCTCAGCTCTGGGGTGCAGACAGAGGGAAGCAGAGGAAAGCATCCAGCACCTTCTTATACAGTAATGCTGTTTCTCAGGTTTAAGCAAACTCTTTTTGCGTACCAACTCTGAGCCCCTCTCTCTGCGCTGCGATGAACGCCTCGCGCTCGCTCAGCATGGGAATCCCCACTCGAGCCCCCGACGGCACCGCGGTGAGCCCGGACACTCTCGCCCCGTGGAATTACAGCGCAGTGAGCGCGCACAAGCTGATGGAGCTGCCGGCGCGGGCCACTACGGTGGCAATGGTGCAGGATGTTCGACATCCTTTCCCAACAGTGGATGTTCCTGACCACGCTCACTACACTATCGGTTCTGTCATTCTAGCAGTGGGCATCACTGGCATGGTGGGAAACTTCTTAGTCATGTATGCCTTCTGCAAgagtAGGAGTCTGAGAACACCAGCCAACATGTTCATCATTAATTTAGCTGTCACAGACTTTCTGATGTGTGTCACTCAGACGCCAATCTTCTTCACCACCAGTTTGCACAAGCGATGGATATTTGGAGAAAAAGGTTGTGAGTTATATGCATTCTGCGGCGCTCTGTTTGGTATCTGCTCAATGATCACACTCATGGTCATTGCAGTAGATCGATACTTTGTAATCACTCGTCCTTTGGCCTCTATCGGCGTTATGTCACGCAAGCGAGCCCTGTTGATACTCTCTGCTGCTTGGGCGTACTCTATGGGCTGGAGCCTGCCTCCGTTCTTTGGATGGAGTGCGTATGTCCCTGAAGGTCTGCTGACATCTTGTTCGTGGGATTACATGACTTTCAGTCCTTCAGTACGAGCCTACACAATGCTGCtctttacttttgttttcttcatccCTCTCTTTGTCATCATGTATTGC
>TU128882
GAAAAATCAATGGAGAAGGAGGACCCAGAGACTCTATAAAGAAGATGCATcgaatgaaaaatgaatggaaGATGGCAAAGATAGCACTCATAGTGATCCTTTTGTATGTCATCTCCTGGTCTCCTTACTCTTGTGTGGCTCTTACCGCTTTTGCTGGCTACGCTGACATGCTCACCCCCTACATGAACTCTGTGCCTGCTGTGATTGCCAAAGCATCCGCCATTCACAACCCAATCATCTACGCCATCACTCACCCCAAGTACAGGTCTGCCATTGCGAAGTATATACCATGTTTGGGAGTCCTGCTGTGTGTGCCTCGTAGAGACCGGTTCAGCAGCAGTAGCTTTATGTCCACACGACGCTCTACTTTAACAAGCCAGTCCTCAGAGAACAGCAGCAACCTGCACCGCGCCG
>TU128887
AGCATAAAGATAGCAAGCTTCTGtaattcctcctcctcctgacCTCAAGAGTTTTTGGAAAGCATTGTAGTGaggtttttttgtcttttgagttTGACtaaatgcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaattccTGTAATATTACTAACGGCCTCTGAAAGTAACAGTCTTGTGCAATAGGACTCCAAGAACTTCAGCTTTACGAATgtggtatttattttgttatcataGTTTAAATATGAGCTATATCACATTAGAAACAAAACTTTTACTGCAAAGCATCTGTCTATCATCTGTTGAAATGATTTAATTGAAGGACTGAAAGATTTCTCCATTGCTTTGGGAAAGCACACGAGCAGAGACTCATCATTATCTCTCTAAATCACAGACAGAGCCACTTCGTGTCATACATGCTGCGTGTGTTTCCATGAATGCCTGATGAATATCGATCCCCCTCCGCAGCCGTGTCGTTTTTGCTGTTCTTCATGTTTCGCATTCACTTTAGAGTACGCGATTATATTCAGCTGTTAATGTTTTGAAGAGTTATGTTGCCTTTGTGCTCGGTGACTGGATGTAACACGGAAGTGACGGTGGCTGCTCTTCTAGATGGCTCTGGAAGACACGgtttagcaaataaatattgtggCGCTCTTAAGAGTTACCTAGTTTTAGCTTGTTCTTCGGTGGTTCGTTTGTAAACAAAAGAGATATTTATATGTCCATATGACATGATATTAATATAGTCTCAGA
>XM_043253243.1
TGAGGCACACAAGGCTTATTCTGGGTGTGATTATGAGGAGCTTAGCAAGGGGCTGTTGGGTTGCATGTGGGATGTTTGAGTTTGCTTAACTGCGCATCCCTCCTCATGCATAGCCTACTGGAACAGGCACATGGTTACTGGCATTGACAaactcatcacacacacacacacacacacacatgttgggcGCAGTTGACAGCTCAGCTCTGGGGTGCAGACAGAGGGAAGCAGAGGAAAGCATCCAGCACCTTCTTATACAGTAATGCTGTTTCTCAGGTTTAAGCAAACTCTTTTTGCGTACCAACTCTGAGCCCCTCTCTCTGCGCTGCGATGAACGCCTCGCGCTCGCTCAGCATGGGAATCCCCACTCGAGCCCCCGACGGCACCGCGGTGAGCCCGGACACTCTCGCCCCGTGGAATTACAGCGCAGTGAGCGCGCACAAGCTGATGGAGCTGCCGGCGCGGGCCACTACGGTGGCAATGGTGCAGGATGTTCGACATCCTTTCCCAACAGTGGATGTTCCTGACCACGCTCACTACACTATCGGTTCTGTCATTCTAGCAGTGGGCATCACTGGCATGGTGGGAAACTTCTTAGTCATGTATGCCTTCTGCAAgagtAGGAGTCTGAGAACACCAGCCAACATGTTCATCATTAATTTAGCTGTCACAGACTTTCTGATGTGTGTCACTCAGACGCCAATCTTCTTCACCACCAGTTTGCACAAGCGATGGATATTTGGAGAAAAAGGTTGTGAGTTATATGCATTCTGCGGCGCTCTGTTTGGTATCTGCTCAATGATCACACTCATGGTCATTGCAGTAGATCGATACTTTGTAATCACTCGTCCTTTGGCCTCTATCGGCGTTATGTCACGCAAGCGAGCCCTGTTGATACTCTCTGCTGCTTGGGCGTACTCTATGGGCTGGAGCCTGCCTCCGTTCTTTGGATGGAGTGCGTATGTCCCTGAAGGTCTGCTGACATCTTGTTCGTGGGATTACATGACTTTCAGTCCTTCAGTACGAGCCTACACAATGCTGCtctttacttttgttttcttcatccCTCTCTTTGTCATCATGTATTGCTACTTCTTCATCTTCAGGGCCATCCGAGATACCAACAGAGCTGTCGGAAAAATCAATGGAGAAGGAGGACCCAGAGACTCTATAAAGAAGATGCATcgaatgaaaaatgaatggaaGATGGCAAAGATAGCACTCATAGTGATCCTTTTGTATGTCATCTCCTGGTCTCCTTACTCTTGTGTGGCTCTTACCGCTTTTGCTGGCTACGCTGACATGCTCACCCCCTACATGAACTCTGTGCCTGCTGTGATTGCCAAAGCATCCGCCATTCACAACCCAATCATCTACGCCATCACTCACCCCAAGTACAGGTCTGCCATTGCGAAGTATATACCATGTTTGGGAGTCCTGCTGTGTGTGCCTCGTAGAGACCGGTTCAGCAGCAGTAGCTTTATGTCCACACGACGCTCTACTTTAACAAGCCAGTCCTCAGAGAACAGCAGCAACCTGCACCGCGCCGGGAAGACGCGCTTGTCCTCTTTGTCTGACAGCGAGTCAGGCTGGACGGATACCGAGGCCGATCTCTCGAGCATGAGCTCCAGGCCCGCCAGCCGGCAGGTGTCTTGTGACATCAGCAAGGACACGGCAGAGATGCCAGACTTCAAACCTTGTAACTCATCCAGCTTCAAGTCAAAGCTCAAAAGCCACGACTCGGGCATCTTTGAAAAGAGTTCCTCTGATGTGGAAGATGTGTCTGTGGTTGGACTCGTTCAGCCGGACCGTACTAACCCTTTAGCTGCTGGTGACGGTGCGGACGCGCCAATTTCAAGAGGTGCGATCGGTCGGATTCCCAGTATTGTCATCACCTCCGAGTCTAGCTCTTTCCTGCCCTCGGTTCGGCCCAGCTACAGAAGCAGCCGCTCAAGTGCGCATCCCCCCCGGAGAGACTCTCGTGGAGGAGTCCAGCAGGGGGCAGTGCATCTGTCCACTGCCGCTGAAACACCCGAGTCCGTTCGCTTACTAGACAACCCTCGCCCGCAGTATCTTTAGTGCTTACAGTTATAACTTTTCCCTCGCGGTCTCAATCTAACCTTCAAGCTTTGTGTTGGGGTTTGGTGTTTTTGTGAGTTATCCTGTTCTGTGGTTTATACCTTTAGTAAGGGGAACGTGAAATGAAGACAAACCCTGAGAAGACTGATCAGTGCTCTGTATCACAGAATGTAAAGTATGAAAGTCATACATTGGTGTCTTTTACGTGTGGTGACTCAACTCTTACATGGTGTCCAGCATCTCCTCTGTTTTAAGGAAACATTTAAGAGACAGTGAATGGAGAGAAAGGGCAcctcagaaaaatattttagtctGTCATCAGTGTCAAATGACATACACAGGTAATATCAGCTTACttaggattttttttgtgtgtttgctttagtaTTAAGCTTTAAATGTTAGTGTTTcttgtatattataaatgtaattttgaactttttgaccatttttattatgtaatttcaCCAGATAAGTATTTTACTATCTTTATTCAAAGCAAGACTTAACCTGAATGTTTTGCTTAAGAAGATCGTCTTAAGACtgcattatgtttgttttgctaaaaTGTTTGCTTCCACAGAACTTCAAGGTATAAAGCCAGAATCTGATCTTCACACTTAAAGCTACATgatgtaactatatatatatataaacaagtgtgataaaaaaaaagtgcggGGAAGAGGGTAAAATGCATCTTTCTTTACCTCAAAACACTTTGATAAACCTTTAATACTGATTTATAATTTAGACAAGAAATCATATACTTGTGTTCTTCTCCTGTGTTAATCATGTCATATATCAACTAGCTCTGGTGTTGTGAGCGTTTTTTCTAAAGTTTGTcagcacaaatgaaaaaaattacccaaaaaaaaactgtattaaaaacaaaggaacctatatatatattatatatatggtCTAGTaagaaactgtgtgtgtgtagtgtataCACCAGTGCCTAAAATAGCATTCATTCGCGCAGAGGGAGGGCCGAGGCGCCATCTTTTTACTCATGCAGTTCTACTTTGCTACCGCTAGAGGGCCGGAAGTTATTTAGAGCTTGTCCAAATACCCCAAATGAAGCATAAAGATAGCAAGCTTCTGtaattcctcctcctcctgacCTCAAGAGTTTTTGGAAAGCATTGTAGTGaggtttttttgtcttttgagttTGACtaaatgcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaattccTGTAATATTACTAACGGCCTCTGAAAGTAACAGTCTTGTGCAATAGGACTCCAAGAACTTCAGCTTTACGAATgtggtatttattttgttatcataGTTTAAATATGAGCTATATCACATTAGAAACAAAACTTTTACTGCAAAGCATCTGTCTATCATCTGTTGAAATGATTTAATTGAAGGACTGAAAGATTTCTCCATTGCTTTGGGAAAGCACACGAGCAGAGACTCATCATTATCTCTCTAAATCACAGACAGAGCCACTTCGTGTCATACATGCTGCGTGTGTTTCCATGAATGCCTGATGAATATCGATCCCCCTCCGCAGCCGTGTCGTTTTTGCTGTTCTTCATGTTTCGCATTCACTTTAGAGTACGCGATTATATTCAGCTGTTAATGTTTTGAAGAGTTATGTTGCCTTTGTGCTCGGTGACTGGATGTAACACGGAAGTGACGGTGGCTGCTCTTCTAGATGGCTCTGGAAGACACGgtttagcaaataaatattgtggCGCTCTTAAGAGTTACCTAGTTTTAGCTTGTTCTTCGGTGGTTCGTTTGTAAACAAAAGAGATATTTATATGTCCATATGAC

Function

symbol description
opn4b Enables photoreceptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; heart; integument; testis; and visual system. Orthologous to human OPN4 (opsin 4).

NR:

description
PREDICTED: melanopsin-A-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009584 detection of visible light biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
TU128881 False 966 TUCP 0.51 5 10481615 10487341
TU128882 False 414 TUCP 0.49 3 10487620 10491172
TU128887 False 803 lncRNA 0.39 1 10495475 10496277
XM_043253243.1 True 3947 mRNA 0.45 11 10481492 10496255

Neighbor

gene id symbol gene type direction distance location
LOC122355261 NA coding upstream 600480 9877616 ~ 9881012 (+)
LOC122355282 shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140 coding upstream 700822 9774372 ~ 9780670 (+)
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding upstream 808178 9671521 ~ 9673314 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding upstream 812390 9665352 ~ 9669102 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding upstream 828106 9648751 ~ 9653386 (+)
jcada si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409 coding downstream 11566 10507843 ~ 10516992 (+)
psme4b psme4b,LOC107749369,LOC107584369,LOC107686372,LOC107657478,LOC108426507 coding downstream 88805 10585082 ~ 10609150 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding downstream 117916 10614193 ~ 10620486 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding downstream 211621 10707898 ~ 10864445 (+)
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding downstream 391856 10888133 ~ 10897280 (+)
LOC122355662 NA non-coding upstream 382551 10078468 ~ 10098941 (+)
G87095 NA non-coding upstream 520534 9960647 ~ 9960958 (+)
G87094 NA non-coding upstream 521523 9959738 ~ 9959969 (+)
G86984 NA non-coding upstream 826215 9654959 ~ 9655277 (+)
G86981 NA non-coding upstream 859140 9619682 ~ 9622352 (+)
G87181 NA non-coding downstream 393141 10889418 ~ 10889625 (+)
LOC122355308 NA non-coding downstream 419909 10916186 ~ 10939829 (+)
LOC122355200 NA non-coding downstream 458381 10954658 ~ 10955795 (+)
G87207 LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045 non-coding downstream 485001 10981278 ~ 10987710 (+)
G87210 NA non-coding downstream 500453 10996730 ~ 10996994 (+)
LOC122355255 NA other upstream 582491 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 606977 9864814 ~ 9874515 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other upstream 714264 9757247 ~ 9767228 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other upstream 817353 9656669 ~ 9664139 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other upstream 1174661 9285663 ~ 9306831 (+)
LOC122355633 rhoq other downstream 1148 10497425 ~ 10499698 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other downstream 26866 10523143 ~ 10582545 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 1198567 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 1385874 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 1440564 11936841 ~ 11945635 (+)

Expression


Co-expression Network