LOC122355633 (rhoq)


Basic Information

Item Value
gene id LOC122355633
gene name rhoq
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10497425 ~ 10499698 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU128885
TGATACCGGGGTTGGAAAGTAGGGAAAGTGGGACAGCGGTGAGGGCGTAGGGTGTTGAGCACGCGGCTTTTAGGTTGTCGTCTTGACGACGCAAAGTTTGTCGCTCGCTCCCGTCTCGTCAGAAGCGGCACGCGCTCGGCGTGTGCCAGTGTTGAGAGGGGAAAACCTCAGTCAGTGGCAAATTTGGGAAACGGGGTGGAGGAAATGgcatttcagctgtttttgctGCCCGAGCGcggcgctgctgctgctggtggaGGTGACGCCTGAAGGGAGCTTTACTAACGAGGGATATATCTCTGATAGCTGAAGATGGTGAATTCAAGTGTTTTATTATCGTCATGGCAAACGGAACCGGCAGCATCATGTTGAAATGCGTGGTCGTCGGCGACGGCGCCGTTGGAAAAACTTGTCTGTTGATGAGCTATGCCAACGACGCGTTTCCAGAGGAATATGTGCCCACTGTCTTTGATCATTATGCAGtgagtgTGACGGTTGGGGGAAAACAGTACCTGCTGGGGCTGTATGACACTGCGGGTCAGTTCCATTGAAGACATCGTAGCTTTTGTGCAATAGGATCAGTGTG
>XM_043254143.1
GCAAGTCAATCCGTGTTGGGCTCAAGAGTCAGAGGAGGTGATACCGGGGTTGGAAAGTAGGGAAAGTGGGACAGCGGTGAGGGCGTAGGGTGTTGAGCACGCGGCTTTTAGGTTGTCGTCTTGACGACGCAAAGTTTGTCGCTCGCTCCCGTCTCGTCAGAAGCGGCACGCGCTCGGCGTGTGCCAGTGTTGAGAGGGGAAAACCTCAGTCAGTGGCAAATTTGGGAAACGGGGTGGAGGAAATGgcatttcagctgtttttgctGCCCGAGCGcggcgctgctgctgctggtggaGGTGACGCCTGAAGGGAGCTTTACTAACGAGGGATATATCTCTGATAGCTGAAGATGGTGAATTCAAGTGTTTTATTATCGTCATGGCAAACGGAACCGGCAGCATCATGTTGAAATGCGTGGTCGTCGGCGACGGCGCCGTTGGAAAAACTTGTCTGTTGATGAGCTATGCCAACGACGCGTTTCCAGAGGAATATGTGCCCACTGTCTTTGATCATTATGCAGtgagtgTGACGGTTGGGGGAAAACAGTACCTGCTGGGGCTGTATGACACTGCGGGTCAGGTAGGGTTAACTCATTCCTCTCTTATTGGCCTGAGGCCTTTTCATTAGCAATAGTAACTCGATCGATTCAGGCAAAGTACACGGTGGCCTGTTCAGATGCGTTCTGAGACTTTTTGC

Function

symbol description
rhoq Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOQ (ras homolog family member Q).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoQ isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128885 False 586 lncRNA 0.53 3 10497463 10499698
XM_043254143.1 True 697 mRNA 0.53 2 10497425 10498640

Neighbor

gene id symbol gene type direction distance location
LOC122355261 NA coding upstream 616413 9877616 ~ 9881012 (+)
LOC122355282 shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140 coding upstream 716755 9774372 ~ 9780670 (+)
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding upstream 824111 9671521 ~ 9673314 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding upstream 828323 9665352 ~ 9669102 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding upstream 844039 9648751 ~ 9653386 (+)
jcada si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409 coding downstream 8145 10507843 ~ 10516992 (+)
psme4b psme4b,LOC107749369,LOC107584369,LOC107686372,LOC107657478,LOC108426507 coding downstream 85384 10585082 ~ 10609150 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding downstream 114495 10614193 ~ 10620486 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding downstream 208200 10707898 ~ 10864445 (+)
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding downstream 388435 10888133 ~ 10897280 (+)
LOC122355662 NA non-coding upstream 398484 10078468 ~ 10098941 (+)
G87095 NA non-coding upstream 536467 9960647 ~ 9960958 (+)
G87094 NA non-coding upstream 537456 9959738 ~ 9959969 (+)
G86984 NA non-coding upstream 842148 9654959 ~ 9655277 (+)
G86981 NA non-coding upstream 875073 9619682 ~ 9622352 (+)
G87181 NA non-coding downstream 389720 10889418 ~ 10889625 (+)
LOC122355308 NA non-coding downstream 416488 10916186 ~ 10939829 (+)
LOC122355200 NA non-coding downstream 454960 10954658 ~ 10955795 (+)
G87207 LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045 non-coding downstream 481580 10981278 ~ 10987710 (+)
G87210 NA non-coding downstream 497032 10996730 ~ 10996994 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 1148 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 598424 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 622910 9864814 ~ 9874515 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other upstream 730197 9757247 ~ 9767228 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other upstream 833286 9656669 ~ 9664139 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other downstream 23445 10523143 ~ 10582545 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 1195146 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 1382453 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 1437143 11936841 ~ 11945635 (+)
G87817 NA other downstream 2233066 12732764 ~ 12737649 (+)

Expression


Co-expression Network