G87125 (svila,svil,LOC107584371)


Basic Information

Item Value
gene id G87125
gene name svila,svil,LOC107584371
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10578754 ~ 10582536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU128925
GTTCTCTGTGATCTCAGCGATGTCCTCTCTGTGTTCCCAGCTGGGAAACATGTTAGTGAAAGTTAGAGGCTCAAGTCCTGCGTGGATTAGATATGATTTTGGAGTGTTCTTCTcattttttcCTTTGCTATATTGGAGTACTGTTTCCATGGCACACTTCCTGTCAGAGTCCCATCGTATGCGAGCTGATCCAGTGCTCTCACTGTCCTGAGGCCACCAGCCCTGCCATAGGTACACTTCATGGTGATTATCCACCAAAAACAGGGCTAAAAGAAACGATCAGAGACATCATGACACTGCCACagacattatcattattattcaatGAGTGCGAAGAATCGAATTTCCTTACATACATTATGCATGTAATAAGTGTAGAAAAGCCTAATTAAAGTGTAACTGACTCCCATCCAGAATACCTAACAGTGCAAGTTAACAAGTTACATCAGACAGCACTCTTAACAGTGTTTAGTGAACATGAATATGTCAAGCACCTGGCTGAGTAGCTGTATACAAATCCTCCTGTAGGAAAGGCATTGAGTTGACCAAATTTGGTTCCCTGGATGGATACACAAACTCCACGGCCACAAACTCTCCTGAAGCGCTGCTTAACTGGAACAGCCGGGGAGTGAAGTTGAACTTTCCCGGATCTGAGCAAAATGTCAAATCACGAatcaaaagtatgtttttaagacacgtaaa
>TU128933
CATTATTCAGTGTTTATTTGCACCACTTATTTATTGATATCACAAATGTGTCTTCAAAATACAGACTAGCATCTGTCTTTATATAAACTGTACATAAAGGCAAGGCACTATACAATGCAGAATAGAAAGACATTTTCTCTTATTCCACGGTTTCGTTCGATCCTATTTGAACAGGAAttcagacacgcacacacacacagagagtatGGTTTCACAGACACTCTCCcatgcacgcatacacacacacacacacacacacacacacacacatatagggTTCTCAAGTTCAAGCATCTATCTGGAAGGTTTAAACACATCTTGAGGCCATTTATAAGAGCAGGTATGAACGTACTTACATAAAGTGCTCTTTTGAGCTTTCTTACAATTAGATAATAACTACAAGGCATTTCATTTATTAGGTCTTTATATAAAGCTGGGCAGTGCATGAGGGCTGCCTTGTGCATGTTGGACGGTGACTGGCTTTATGTGGACACAGCAACGCAAGAACGATGGGAAGAAAAGATGCTGGGAGCAATCAAAACATTCAACAAttcactgataaaaaaaaaacaaacaaaaaaggagaaaatgagagaaatgtGCTACAAGAGGCTGCTAAACCCCTGCCCATTGGCGTCTTTTCTCCTTCATCCTGCTCCTTTTCACCGGCCTGTGTGGTTTGACACAGGTAGATCTTCACTTGCATTTGTCCTTCTTGATTAAAAGGAATGAGAAAGTCTCCAACTTCAGATTCAATCCCAATCAGCAGTTCCTTTAAAACAGTCCTTTGGCTTTCTTCACATTCACTTGCTTCCACCCTGGTAGTGCCTCGTATTCACTTCTTGTCATTTCCAATGCTTTCTGTAGAGAACATACAACACGTACAACTTTAGGTATAAGGGTTTGCAGGTGACACAGAAGTGTTAATCATGTACTCAAGGCACTGAACAAAATGGATGAatggaccacacacacacaaacacaaaagctgAAGGATACTGGTCACTGCCATTCACCAatccaaaaatgcaaacaacatTAGAATACAAAGTATTCAGTcaatgttgaatatttttaggtgctatcaaatgattaagtcgcatttaaaataaaagttgtgtataataatgtgtgtgtgtgtagtgtgaacatttataatgtacatataaatactttttttttattatttatattttatattctccttttgaacatttaaatcactcaaagttaataaaaaaaaaaaaaaaatttttttactgtatttcatgTTGTTCTGCTGCTCAAATTCACatgaagcatttatttatttatttatttatgtatttaaaagtgGTTATTGGCCACAACAAGAAAACAATTACAGTattatcagttttattattagcaCATGcctaaacgtaaaaaaaaagaaaagaaacaagactaccattcaaaagtttggggttagtataatttatttagtttttttctccaaCCAAGGCTAGTAAtagtaaaagtaatattttgaagtgttgttacaacattaacttttttaaatggaaatctCTGCAATGTATTTACGGTCACGTTAGatccatttttatacatttttgctggaaaaaactatacaattataaaaaaaaaaaaaatgaatgaccccaaacttttgaaccaGTGTATGTCCAAGAAAAATTCAACCCCATGTGTGAGACCTAGAGCATCAGTGAGATAAGAGTGGTGAACAGTGGCCCACCCGATGCTAGATACTAGGCGGTTTGTGCCATGGCATGTGACACACAAGCGCATGGTGATGCAGTTCACACAGTGAGAATGTGGCATTAGTGGGGAAAACACCAGTGTTCCTCAGGAAACAAGACTCACCTTCCCAGAAGCCCCTACACCCTGGCATGTGAAGGGAAAAATTAACCTCATCAGACGCAAGACTACACCAAAAAAAGGGGAGAAGCAGAAAGATGCAGGGGGAGAGAGGTTAAGAGAGGCTGCTTTAAGATGACATAGTGGAAGCAGAAGGAGAAACATGAAATAGATGAAGGGTAAACatggcaaaataaaagtagATAGTACTTGAAAGACAGAAAATATGAGCACACACAGGCAGACAGATGTTACGGTACAGATACACTTCAGTAATATCCCTTGTCCAATGTCTCAAAAtcatacaattatttaaatcgTCCACAACTATAAAGTTAGGCTTCAATAACCTTTTATTCctctaattaattaatatctctcccaaaaatcaccaaaaagtttgtaaccaggctgttttgggtcaccactgacttccatagtaggaaaaaaatactatgaaagtcaatggttacccaaaacagcctggttacaaacttttttctaattatcttcttttgttttcggcagaacaaagaaattcatacaggtttggaactttCATttcaagaattttcatttttgggtgaactattcctttaaaacggCACTGAAAAATATCTATCAAGTATGTAATCCTTTGAAACCTCACCGTTAATGCGGTTTTTCTCACCTCAAAGTCCTCATCTGAAAGGTAGATCTCTAGATGCAGAGGGTCAACTCCTTCTGGTAGCGGACGAGCTTGAAGATCAGCAAGTGGGTAAGTGGTCTTGCAGAGTCTAGTCAAGACGTCTTCAACCAGAATGATCTGATTACATACTTCAGCCTCCTATAAATCAAAGAAACCAACAAAATCTTTACACTACgtttttaaacacaaacttGGTATGAGAGTTAATGTTCCTCTCTCACGTTCTCTGTGATCTCAGCGATGTCCTCTCTGTGTTCCCAGCTGGGAAACATGTTAGTGAAAGTTAGAGGCTCAAGTCCTGCGTGGATTAGATATGATTTTGGAGTGTTCTTCTcattttttcCTTTGCTATATTGGAGTACTGTTTCCATGGCACACTTCCTGTCAGAGTCCCATCGTATGCGAGCTGATCCAGTGCTCTCACTGTCCTGAGGCCACCAGCCCTGCCATAGGTACACTTCATGGTGATTAT

Function

symbol description
svila Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to act upstream of or within cytoskeleton organization. Predicted to be active in actin cytoskeleton and cytoplasm. Is expressed in several structures, including adaxial cell; cardiovascular system; musculature system; optic vesicle; and sensory system. Human ortholog(s) of this gene implicated in myofibrillar myopathy 10. Orthologous to human SVIL (supervillin).
svil Enables actin filament binding activity. Involved in skeletal muscle tissue development. Located in several cellular components, including actin cytoskeleton; costamere; and cytosol. Implicated in myofibrillar myopathy 10.

NR:

description
PREDICTED: supervillin isoform X11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128925 False 702 lncRNA 0.43 2 10578754 10579770
TU128933 True 3017 lncRNA 0.37 2 10579205 10582536

Neighbor

gene id symbol gene type direction distance location
LOC122355804 nrg3b,LOC107566665,LOC107573948,LOC107678479,LOC107689960 coding downstream 434025 10138438 ~ 10144729 (-)
LOC122355287 fam20cb,fam20c,LOC107734234,LOC107699871,LOC107669229,LOC107731385,LOC108432010 coding downstream 773244 9788025 ~ 9805510 (-)
LOC122355272 cpped1,LOC107584109,LOC107669238,LOC107554009 coding downstream 822707 9743392 ~ 9756047 (-)
LOC122355289 ercc4,LOC107734247,LOC107669240,LOC107692079 coding downstream 838226 9734537 ~ 9740528 (-)
LOC122355243 LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding downstream 844414 9713064 ~ 9734340 (-)
chac2 chac2,LOC107749368,LOC107686371 coding upstream 28112 10610648 ~ 10613502 (-)
foxn2b LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647 coding upstream 317717 10900253 ~ 10915884 (-)
fbxo11b fbxo11b,fbxo11,LOC107728720,LOC107582786,LOC107550041,LOC107673644,LOC107698831,LOC108430631 coding upstream 336243 10918779 ~ 10931157 (-)
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding upstream 349326 10931862 ~ 10938013 (-)
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding upstream 402506 10985042 ~ 10996581 (-)
LOC122355705 nrg3b,LOC107678479,LOC108426474,LOC107689960,LOC108273971,LOC107566665,LOC107387893 non-coding downstream 133976 10409339 ~ 10444778 (-)
G87104 NA non-coding downstream 217340 10360877 ~ 10361414 (-)
G87055 NA non-coding downstream 811516 9763102 ~ 9767238 (-)
G87034 NA non-coding downstream 943637 9632044 ~ 9635117 (-)
G87019 NA non-coding downstream 1004229 9573634 ~ 9574525 (-)
G87164 NA non-coding upstream 22696 10605232 ~ 10606019 (-)
G87388 NA non-coding upstream 210527 10793063 ~ 10804738 (-)
G87376 NA non-coding upstream 234025 10816561 ~ 10864596 (-)
LOC122355137 NA non-coding upstream 286312 10868848 ~ 10894717 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding upstream 313305 10895841 ~ 10896147 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 638905 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1089442 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 1700623 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 1891184 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 1891206 8682443 ~ 8687548 (-)
cript cript,LOC107582781,LOC107728714 other upstream 422470 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 460352 11042888 ~ 11045889 (-)
G87489 NA other upstream 738887 11321423 ~ 11322603 (-)
G87569 NA other upstream 1250343 11832879 ~ 11835612 (-)
G87608 NA other upstream 1366004 11948540 ~ 11951155 (-)

Expression


Co-expression Network