G1683


Basic Information

Item Value
gene id G1683
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3211823 ~ 3212955 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU1888
GAAAAACATCATGTTGGGGAGTCTCTAACTGTGTTGAGTGTGTTCTCTCTAGCGTTTCTCATCCGCCTCTCCATCAGAGACAGTGTGACACAGCCCAGTCTGTTACATAAGCCTTGCGCCAAATGGCGAGCCGGCGGACAGAATCACATGCAAGCGTCTCAAAGCGGTCAAAGTAACATCTTGTTTATTCTATGCACTTTAAAGTTCAAAAACTGACATCCTAAAATATGGACTTAATTTGCACTATAAATGCCTCATAGTATGCATGAATGAGACTGCAGAAGAACTACGAAGGCAAAGTGCTCCATTTTTTTTCTTCTTATAATAATTTTTGAGTTTAATTCGTCTGAGCACGCATAGGTCAAAATAATTTTTGCAGCATTTTCAAAGGGCCTCTCGTGTGGCTTCACTGCAGAGAAAACGCCGCAATGTAACCTTCCTGCCTAATGTTTAACTCACGAGAAAATAACGAAAATTATTCAGATTCTAGTGAAACCTGCGCTGCGCGTGCAAACAATCACGCACATCCGAGACAAGCGCGAGACAAGCAAACCCGCGTCCAATCCATCCATGCACTTCCAATCCAATGTAAACATTACAGCATTACAGCAACAAAACAAGGAGGGGCTCAAGGCTTTAGGGGGACAAGATATAAAAACACGCTGATACCTATGTGCGATGCATTCAAGACCATGAAAACCCACGGAAATCCACGCCATCAACACGAAGACGCAGGCGCGTGCGTTACCTGATTGTTAATTTGTGAGCATCGCAATCGCTGACATTTCTCCTTGTAATTCTTCACATCTCTCCCATATTCGGTGCGGCATGATCCTCAGCTGTTCCTGTTAATGGAACATTCCGTGGATTTCACCACTGATTTGGGGAAAAGGTACAAACTGGAGCTCGCGCGAAGAATAAAGGCAGAATATGTCATTACTCTTCGCATCTCGCGCAAAACAACCACTCTCTGAATGCATCAGACTTTGGAGAAACCAATGCACTCGGTTGAACCCAGTATCATCCGCCGCCTATTTGCGTGATTTTATGACATACCCCTAT
>TU1891
ATGAAAACCCACGGAAATCCACGCCATCAACACGAAGACGCAGGCGCGTGCGTTACCTGATTGTTAATTTGTGAGCATCGCAATCGCTGACATTTCTCCTTGTAATTCTTCACATCTCTCCCATATTCGGTGCGGCATGATCCTCAGCTGTTCCTGTTAATGGAACATTCCGTGGATTTCACCACTGATTTGGGGAAAAGGTACAAACTGGAGCTCGCGCGAAGAATAAAGGCAGAATATGTCATTACTCTTCGCATCTCGCGCAAAACAACCACTCTCTGAATGCATCAGACTTTGGAGAAACCAATGCACTCGGTTGAACCCAGTATCATCCGCCGCCTATTTGCGTGATTTTATGACATACCCCTATGTGGGGCATTTAGAGGCCGCTTGCGTATGGCAAGCAGTTTGAGCATTATTCCGTATAAATAACTGTAGTTA
>TU1889
GCTGACATTTCTCCTTGTAATTCTTCACATCTCTCCCATATTCGGTGCGGCATGATCCTCAGCTGTTCCTGTTAATGGAACATTCCGTGGATTTCACCACTGATTTGGGGAAAAGGTACAAACTGGAGCTCGCGCGAAGAATAAAGGCAGAATATGTCATTACTCTTCGCATCTCGCGCAAAACAACCACTCTCTGAATGCATCAGACTTTGGAGAAACCAATGCACTCGGTTGAACCCAGTATCATCCGCCGCCTATTTGCGTGATTTTATGACATACCCCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1888 False 1062 lncRNA 0.39 1 3211823 3212884
TU1891 False 441 lncRNA 0.37 1 3212515 3212955
TU1889 True 285 lncRNA 0.39 1 3212600 3212884

Neighbor

gene id symbol gene type direction distance location
CI01000000_03184726_03189468 FAF2 coding upstream 22355 3184680 ~ 3189468 (+)
CI01000000_03178021_03180730 NA coding upstream 31011 3178021 ~ 3180812 (+)
CI01000000_03163645_03170599 CLTB coding upstream 40812 3163157 ~ 3171011 (+)
CI01000000_03073311_03109669 UNC5A coding upstream 102005 3072290 ~ 3109818 (+)
CI01000000_03044838_03057977 NA coding upstream 153253 3044512 ~ 3058570 (+)
CI01000000_03220166_03232503 NA coding downstream 7211 3220166 ~ 3232503 (+)
CI01000000_03232984_03233709 NA coding downstream 20029 3232984 ~ 3233989 (+)
CI01000000_03630643_03637287 LRRTM2 coding downstream 417636 3630591 ~ 3638076 (+)
CI01000000_03724666_03729920 MCHR2 coding downstream 511145 3724100 ~ 3730043 (+)
CI01000000_03864153_03869858 NA coding downstream 651198 3864137 ~ 3870246 (+)
G1682 NA non-coding upstream 387 3210830 ~ 3211436 (+)
G1515 NA non-coding upstream 62423 3124498 ~ 3149400 (+)
G1523 NA non-coding upstream 272795 2923688 ~ 2939028 (+)
G1661 NA non-coding upstream 332953 2878591 ~ 2878870 (+)
G1645 NA non-coding upstream 383210 2828371 ~ 2828613 (+)
G1689 NA non-coding downstream 28683 3241638 ~ 3241848 (+)
G1690 NA non-coding downstream 29648 3242603 ~ 3242897 (+)
G1525 NA non-coding downstream 52774 3265729 ~ 3267405 (+)
G2124 NA non-coding downstream 112350 3325305 ~ 3325615 (+)
G2151 NA non-coding downstream 159460 3372415 ~ 3372830 (+)
G579 NA other upstream 1303015 1767917 ~ 1908808 (+)
G435 NA other upstream 1778969 1425121 ~ 1432854 (+)
G350 NA other upstream 2534886 671842 ~ 676937 (+)
G252 NA other upstream 2704751 503209 ~ 507072 (+)
G2774 NA other downstream 1240823 4453778 ~ 4454232 (+)
G2850 NA other downstream 1513031 4725986 ~ 4726482 (+)
G6811 NA other downstream 6991876 10204831 ~ 10321679 (+)
G6820 NA other downstream 7214268 10427223 ~ 10433018 (+)
G7018 NA other downstream 7765534 10978489 ~ 10980872 (+)

Expression


Co-expression Network