G87207 (LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045)


Basic Information

Item Value
gene id G87207
gene name LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10981278 ~ 10987710 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129060
acaacacttttatttttgaatattaagaCAATGAAGCATAAGCCAAGAGCACCAAGAGTGACAGGTACTGGTGAAAGAGGGGTATGCGGAGCAGCAACCCTCTGCCCCCCAAAAAACAGCAAACTGTAACCCAAAGTCAAACGAAATAATACAACAGAGCAACTTAGTAACAGCCTGGGAGTAGGGACCATTAACTGTACTGTACATTAGAGAGAATGAAGGAAAGATAAGAGAAAGGACATCAAGTGCGAGTAATTACATCATACAGTACAAACCTCGGGcagtgtataaaaaaataactattgaAACATAGAAGATGGTGAGAGACGGTGATAACCACGTCACTCCAGATAATCCATGGTGCATGTTTCAGCAAGTGTTTTGAGGGGCTAGTCCCAAGGCTCCAATCAGAAATGGGTGGCGCAAGTCATCCCAGTCCTAAACCTCACCTTCAACCCCTTTCTCCAAAACCAATGTGCATATAGATCTTTACAGTAACATAGTTACCATGATGATGCTTGTGATTTATTGAATCTGAAGCCGATTCAACAGAATATAATACAAGTCAGACAGCCAGTCAAGTCTTATTTCTGTCTAAACATTGTCGAATTTCCTTATAGTTTGTGTACGGAAACATATCGAAATCATGTATAGAAAACCTGTCCTGTTGATAATGTGCAAGGCTCTGCACACAAAATGATCTTCTCTCTAATATTAGAACGTAGTTGTTATTGTCTAAAGGAAAATCCAGCTACTCCAGTTTATTGATAGGTATACATCGTGTGAGGCCACATGCTACCAATCCAAGCCTTAGTATCATATCTAAGATCATGACCTTTCGATCTTGCTTTATGATCTGTGATACAGTCTCCATCCATGCTGACTGATCACTTGAGTCAATCATACACCTGATGGTCTATAAATATTGAACATTAATGTTTAACTCCATTGTTCTGGATGCTAAAATATGGGGGATTAAAAGCTTTGTGCATACTAATTTTCTGAGATATTTTCAACTTTCTTGTTGCAAACAACTACActtgtataaaaacaaataaaactaatgcatatgtttttgttgcattttctaCAACGGgggattttgttttaatttgctgcAACAGGCAAATTATTCAGATTAGGGACTTCGAAGAAATGGTAAGAAAATTTAAGAAAAGGCACTTCTGAAAGTTAATAAATCCATACAGTGAGCCAATTAGCACCTTTGGGGTCTTAAACAAGACCCTTTTTaactttgaaaatgtttatcttGGAACATTTGTGTAATCATTTTGTAAGGATGGTATCTAAAAGCTATCGCATTGACAATTTTTCACCAAACTTAAACCTTTGGTCACAATAATCTATAGTTTCTCTCTCATACCTTTATGACACATTGCACCATGTCCGTTTGTCTCATGTTGTGAACATAATGATCCTAACCTGAAGACAATTTCAAAGGAGACCGGCTTAGACAAATCACATCAGTTTTCACATGGGTCACCATTAGAGCTAAGCCCGAGAACATTATTGCATTTCTTTACAGttactaatattaaaaatatttcattttgaaatctgtatcaatatatatatatatatatgtgtgtgtgtgtgtgtatatatatataggtagaTAGATATCTATTTCCATTACATCTTTAGTAAAACTAGGGAAAACTGGGGGAGAGAGAAGAGGCACGAGGACTCCATCTCTGCCCCCAATCTGACTGAGCAAATGTTCCACCCCTGATGAAAATTGGTACACACAGGTATAGGTAGGTACACGTCAAGTTTCATGAGTTAGTGCAGCGAGGAGTGTCTGGAGCGAAGCCAAGCATGACACTTTTACAGGTGAGCGGTAAGCAGGACAGCTGGCCCCTTCAGATGCCATGTCAACCTGAAACCTGCTTCACAACCTCCATCTAAGCCAAGGTTCTGTCTAAATTGCACTAATTTCACCCACACCTTACAGCAGAGAAAGGAGGTGAGGGAGAACAAACCACACAGTGGTGAGTCAGCGCCGCCCCCAAAGTTCCCTCCTCGGGTCTTTGAATGCTTCCTAAGATGACCCTGAATTCCTTTCTTGtgcaaggaaaaataaaataataatcaagaGGAGAACGTGCAGGAAGACGACTTTAAATGCATCAGGATAGATTGTGGATTAGTGTTGCCTGGGAGGAACGGATAACACAAAACTTTTAATGTCAGCAGAAGTCTCTTGCAGTTGACAGGGAGGTCAGGGGCAGtgcaacacactcacacaagcacacaaagCTGGTTATAGTCGCACGGTACCGCGCAGCTGTTTAGGTGTTGCGAGCCTGAGCTTAACATTTGGCAGTTCTACCTGATCTCATCAATTGAAAACAAGTCAAAAAGATGTGGGCATCGATAGTCATATCCCGATAGTCAGTACTCAAAATACATCACACATCAGCACCAGGCCCATGAAGAGGATGTCTCACAGCGCCATTGGCACTCAGTGCAGGAACAGACATTGGAAAGTCTTTTCCAATTGGACCACTGTTAGTAACATCCACTGAATGCACCATATGATGAACTAAAAGCTTTAGATGTATGAAGGCACaatgcttaaaggaatagttcaccaaaaaatgaaaatagtgtcatttactcaccctcaagtagttccaaaccattgacttccatagtaagaaaacaaaatactatggtaacccaaaacagcctggttacaaaccttttccaaaatatattcctttgtgttcggcagaacaaagaaattcatacaggtttggaactacttgagggtgagtaaatgatgacacaattttcatttttgggcaaactattcctttaagtcatCCAGGACTTTTTTGAGACTAAACAGATGGGGCAAAAAGCATGAGAGTTAGAAATCTGTCTTATCCTTTTTCCAGCATTCATCAGAAACACCTGTGGCAGTTGAAATCCCtcattttagtcaaataaattcAAGTGCGGATATGGCTGATTATAAAGTGATAAAGAAGCTGGTCTTGGCCTAAATCCTGAACTTTCTTCCTAgttgctttcaaaaaaagaatatgatAAATGTACTACAAAtcattaaagagatagttcaatgcaaaaaataataaaattctgtttttaattaatcactcttatgttgttttaaacctctaaaacctttgttcatcttcagaacacaaattatgatatttttgattaaatctgagagctttccaactctgcatagacagcaaaacaaacaccatgttcaagaCCTAGAAAGgcaatctttaaaataatgcatgtgAGATCATCAACCTAAATTTTATGGAGCAACCACAAAGACCTacacagaagagaaaaacaacttGAGTAAAGCcgtggtttttgttttctttgcgaataaaaagtattctcacAGTTTCGTAAGATTACAGTTGaagcactgatgtcacatggactattttaacaatgtccaaTGTCCATGAAAGTAGTAGTTTTGTTGCTGTCTGTGCAGGgccagaaagctcttggatttcattaaaaaaagaaaatcattctgaagatgaacagaggTCTTACAGTgttggaatgacataagggtaagtaatggcagaattttcatttttgtgttaacTATCCTTTTAATCAATTATGAAATAATCCCAAAACCAAGCCAAACAAGCCAGCTTGACCCAAATCCAATGGCACTGATGGGGTCACCTCAAAATTTACTCTGTCCTCTTTAGAACATTGAGAATTGAGTGTTTATTCCTATATAGGAGGGTGTTTATGTCTAAAAGCAATGGTCCCAGTGTAGCAGGTTAATGTATTGCCTTTGCTTCACCCACTAACATAAGCacagttaaagttaaagtgCTCTCAACCAGCGCCCAACCTCCAGGGCACTGATAGACCATtcaaatcaatacaaaaaagaCGATACAGAATTAGTCACCCCCCTGTGCAATTAGTGGTAGGAATTAATGATTACAAAACATTGACAGCAACAGAACGCAGAGTGTGAGTAactatgttttttgaaaaccgaGCACTCTCACATCACACCGTGCCACGTTGTGCACATCTTATCGCTTCCTGGAAGCAGAATGCCATAGAACCCTTCTCTCCACTGCAACGCATTCCCAAAAGCTGTCTGGACACATAGTTTAAAGTCAATCCATCTTTCATGATTTCTTCGTCTCGTTCTCTATGAGCAGGATGAAAGCCTTTCTATGTCCTGCTCTAGAATGCCTCCTCCTTTAACAACGGAATGAGCGCAGAATGTTACCATAGGAACCACTGACAGAGCACCATAAAAGCTAAGGATGATGAAAGAAGCTGGGAAAGCAATATTTGAACATCACCCTTCATTTCCCCTTCTCTCAAAATTTGTCCGCAATGTTACTTTGAACAttaacaatgcatatttaaCGTAAGGGATTTGAGAGCAGGTAAACGgtacaacaaaaataaagtgaaatggCTATAAACCACAAAGTCAAGCAGTGAAAGAGTGGAGGGGTATGAAAATATCTGTATCTGCAGATTCCCCCATAGCCATGGAAACTGAGGGAGAAGGGAAAATGAGACCTCGGCTGCTGCTTTCTATTCCAGAAGCTGTAATGAAATGTGCACACTGGAGAGCCACTGTATATgtaatttcttttgtttgttaagagtgataaaaaaatgataGGAGCTTATATAGTGTTCAGTTTCAGGTCCCTCCTTTCAACCCTGAACATCcccccaccccaaaaaaaactaattcctCCACCTCTGCAAAGTGCTGAATGGACTACTCCTGTTGGAGAGCTGAGAAGTATCTGCCCTGCCTCACTTGGCCTTGACTGGTTCTCTCTCAAGCCAGCGTACGCGGACCCTCTGCTTATAATGATACTCCCTGAGGTAGTCCTGCAGAGCAGGGGGCAGTGGCAGTGCCCCGATGCCATCGTAGGTGACCCCACCGCAAATGGCTGATCGAGCCAGGCTTTGCAGGCCAAATGGAAAAGTCCGGTGCAGAGGAACAGTGAGCAATGGCTCAAAGAACATGCAAGCGCTAGGGTCCTTGTAGTGTTCCAAGAGTGCCGTGACGGTGGCTGCATGGAACACGCAAGGGTCGTGTGCATCAAAACTGAAGTTGTGATTCCACTGCTCAATGCGAGCGTGCAACGAACGGCCATAGCGGCGGAAGCTAACAGAAAACAGGTAGTCTTCTTGAGCCGAGTCTCGCAGGAGAAAGGTTCCCTCAGGCCGACCATCCAGCAGTGCTTCAGCCTCATAACGGTCCATCACACCCCAGTAGCAGGGAAGTGCTGTGATCTGTAGCAGATCTGGAACCAAGCAGTGTATGTAGTCAATCTGAGTGTGTACTTTCCAAGGCCCCTGTTGCTTGCTGCTCAGGATGCCCTCCGCCGAAGCGTGCCGCTGCTTGGGCCTGCGAGCTTGCAAGCAAAGAGTGGTGGTATCGTCATCCTCAGAGTCACAGTTAGCTGCTGTTGCCCCCCGGCTATCTCCTGTGGCCTCACCCATTCCAGGGGCCAATTTAGGTCCCAGTTTATAAAGGGAAGCCAGAGGCGCTGTGATAGCCTCCACTGTGTGAATTTGGGCATCTGGAGGTGGGTCAACACCCTCCTCAATGCTGAGTCGTCTTCTCTCTCTCAAGCGCTCCTCTTCATCTTCCGGAGATGCACAGGTAGCACTGCAAGCATCTGTGGATGAATCTACTTGTGTCACTGTGACTGGTGCTGTGTGCTGTTTAATGAGGTGCCATTTTCGGGCAAGGTCTGATCCTGGAGCGAAGGGGCATGTCTCTAGCATCAGCTCTGTGATTTGTATCTTACGTTTGGGTGGTGGAAGGTGAGTGTTCCGAGAGGATGAACGCAGTGGCAGGCACAGGCCCACTGTATCATGAATCTGCTGCCGTAGGGAGCGTGCTCCCCCTGACTCCAGTTCCTCACGGCTGCTACCAGCCCCATGCCTGCGCCGAGACCGACCTGATCGTCGATCTGTGGTCTCCAGAGAGCTCTGAGCCTTAGTGGAACACGAGTGTCTCTTCTTTCCACTCCAAGGTGCATGACGTGAGTAAGAGTCTCTCCGAGCTCCCAAGGGAGCTCGAGCATCTTCAGTATCCTGCTCGACTGTGATCTCTAGTATCTGGGGTACATCCACTACACAGTTGTGGCCCTGTCGTGTCACACTCCCACTGGGACTAACAGCCTCCAGAGTGATGTCTGCCTGGGCCTTGTCCCCACTCTGGCAAACAGTGTCTGTTTGCGGTTGAAGCTGTGGTGGCCTTTCAATGCGAGAACCCCCATCTGTGTGGAGCAGAGATTGACATCCCTTCTTAAGGTTGCTCCACACCTTGCCAACTTTCTCCATGAGGTGGGGG

Function

NR:

description
PREDICTED: suppressor of cytokine signaling 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129060 True 6391 lncRNA 0.43 2 10981278 10987710

Neighbor

gene id symbol gene type direction distance location
calm2b calm1,LOC105896953,LOC107670363,LOC102778633,LOC102293206 coding upstream 32237 10944753 ~ 10949041 (+)
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding upstream 83998 10888133 ~ 10897280 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding upstream 116833 10707898 ~ 10864445 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding upstream 360792 10614193 ~ 10620486 (+)
psme4b psme4b,LOC107749369,LOC107584369,LOC107686372,LOC107657478,LOC108426507 coding upstream 372128 10585082 ~ 10609150 (+)
gch2 gch2,LOC107550032,LOC108429343,LOC105896951,LOC105006138 coding downstream 13144 11000854 ~ 11004942 (+)
pigf pigf,LOC107698824,LOC107550047,LOC107749355,LOC107582779,LOC107728710,LOC107700117 coding downstream 19254 11006964 ~ 11013659 (+)
mta3 LOC107698822,LOC107582777,LOC107728718,LOC107700107,LOC108430512 coding downstream 67984 11055694 ~ 11082276 (+)
ppm1bb ppm1bb,LOC107582773,LOC107698817,LOC107749348,LOC107550052,LOC107700122,LOC108430462,LOC108273990,LOC107739221 coding downstream 153914 11141624 ~ 11165042 (+)
six3b six3b,LOC107550037,LOC107698799,LOC107582771,LOC107739239,LOC107749382,LOC107700110 coding downstream 222541 11210251 ~ 11212765 (+)
LOC122355200 NA non-coding upstream 25483 10954658 ~ 10955795 (+)
LOC122355308 NA non-coding upstream 41449 10916186 ~ 10939829 (+)
G87181 NA non-coding upstream 91653 10889418 ~ 10889625 (+)
LOC122355662 NA non-coding upstream 882337 10078468 ~ 10098941 (+)
G87095 NA non-coding upstream 1020320 9960647 ~ 9960958 (+)
G87210 NA non-coding downstream 9020 10996730 ~ 10996994 (+)
G87222 NA non-coding downstream 52958 11040668 ~ 11040906 (+)
G87220 LOC107749353,LOC107550036,LOC107698821,LOC107700109,LOC107728709,LOC107582776 non-coding downstream 94490 11082200 ~ 11089057 (+)
LOC122355479 NA non-coding downstream 95688 11083398 ~ 11089158 (+)
trnai-uau_3 NA non-coding downstream 96567 11084277 ~ 11084370 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 398733 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 481580 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 485001 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1082277 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 1106763 9864814 ~ 9874515 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 707134 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 894441 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 949131 11936841 ~ 11945635 (+)
G87817 NA other downstream 1745054 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 1772664 12760374 ~ 12762731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G234069 NA non-coding NC_048567.1 CM023221.2 20914147 ~ 20915906 (-)
rainbow trout (Oncorhynchus mykiss) G1834504 NA non-coding NC_048587.1 CM023241.2 15750260 ~ 15752584 (+)
eurasian perch (Perca fluviatilis) G197053 NA unknown NC_053130.1 CM020927.1 26663159 ~ 26663785 (+)