G87238



Basic Information


Item Value
gene id G87238
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11224765 ~ 11227915 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>TU129121
TTGACGTATAAGCAGAGAGAGGGCTTCTGAGGAAGCCTGGACATGACGCTTTTCGTGCCGTCTGACCTTTCCGCCGTGACACTCGAATGGCCAATTCAAATACCAGCAGCATTCGAAAATCGGCTACATCAAACCTTTTCGCGAAGGTTTATAAATCAGCAGCGGGGGTCTGTTTTTGGAGTCTGTCAGTTAAGGAGCTTTGCGGACACCTGTGATAGCAGGTTAGCTCACCtgagaggaggagaaaggagAGCGCTGTGAAAGGACCACACACCCCTGCGCAGCTGAATCCACGAGTGAGACCACCTTTCCCTCACAATGGTTGGAATTAACCAAATCAATACACCTTTGTGTTCCTGAAGCAGAGAGGAACTAATGCCAGCCGAGGTCTCGTACTTTATTTGAGAGCTTTAAAGAGCAAGATCTTGCACCTTTTAATAAGTCTGCGGCTGGAATTATAAGAACCCGTTTGCCAGTCAACTTTCAGAGCTAATGCTCCTAAACATGACCGGTGTAATGTAACTTGTCAGATCGAAATGTTAATCAAGCTTTCAAAGACAATAATTCCTTTTGATCAAACTAAttccttgtgttttcatttacaatCGGACACTCAATACTTTGGGACAAATTGATCCCACAGCAACACAGgataaaattagttttacttTTGCATGAATACGTAGGGAGTATATGTtacaaacccaaaac

Function


GO:

id name namespace
GO:0046040 IMP metabolic process biological_process
GO:0006188 IMP biosynthetic process biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU129121 True 711 lncRNA 0.44 2 11224765 11227915

Neighbor


gene id symbol gene type direction distance location
six3b six3b,LOC107550037,LOC107698799,LOC107582771,LOC107739239,LOC107749382,LOC107700110 coding upstream 12000 11210251 ~ 11212765 (+)
ppm1bb ppm1bb,LOC107582773,LOC107698817,LOC107749348,LOC107550052,LOC107700122,LOC108430462,LOC108273990,LOC107739221 coding upstream 59723 11141624 ~ 11165042 (+)
mta3 LOC107698822,LOC107582777,LOC107728718,LOC107700107,LOC108430512 coding upstream 142489 11055694 ~ 11082276 (+)
pigf pigf,LOC107698824,LOC107550047,LOC107749355,LOC107582779,LOC107728710,LOC107700117 coding upstream 211106 11006964 ~ 11013659 (+)
gch2 gch2,LOC107550032,LOC108429343,LOC105896951,LOC105006138 coding upstream 219823 11000854 ~ 11004942 (+)
prkcea prkcea,LOC107550054,LOC107698816,LOC107739250,LOC108274197,LOC108430457 coding downstream 2272 11230187 ~ 11277491 (+)
epas1a LOC107698815,LOC107550055,LOC107739260,LOC107700124,LOC107582769 coding downstream 50357 11278272 ~ 11298505 (+)
glud1b glud1b,LOC107739271,LOC107700126,LOC107698813,LOC107550058,LOC107749346,LOC108430434 coding downstream 78157 11306072 ~ 11320705 (+)
mmrn2b LOC107749343,LOC107698811,LOC107550061,LOC107700129,LOC107582854 coding downstream 107866 11335781 ~ 11344597 (+)
itgb3b itgb3,itgb3b,LOC107698806,LOC107700113,LOC107706862 coding downstream 325196 11553111 ~ 11568617 (+)
LOC122355611 NA non-coding upstream 93875 11122923 ~ 11130890 (+)
LOC122355479 NA non-coding upstream 135607 11083398 ~ 11089158 (+)
G87220 LOC107749353,LOC107550036,LOC107698821,LOC107700109,LOC107728709,LOC107582776 non-coding upstream 135708 11082200 ~ 11089057 (+)
trnai-uau_3 NA non-coding upstream 140395 11084277 ~ 11084370 (+)
G87222 NA non-coding upstream 183859 11040668 ~ 11040906 (+)
G87240 NA non-coding downstream 32191 11260106 ~ 11419212 (+)
G87241 ldb3,LOC107743565,LOC107696891 non-coding downstream 149198 11377113 ~ 11392372 (+)
G87272 NA non-coding downstream 210490 11438405 ~ 11515996 (+)
G87282 LOC107552728,LOC107706876,LOC107700134,LOC107698791,LOC107582764,LOC107727319 non-coding downstream 245931 11473846 ~ 11541104 (+)
G87285 NA non-coding downstream 256278 11484193 ~ 11496992 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 642220 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 725067 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 728488 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1325764 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 1350250 9864814 ~ 9874515 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 466929 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 654236 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 708926 11936841 ~ 11945635 (+)
G87817 NA other downstream 1504849 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 1532459 12760374 ~ 12762731 (+)

Expression



Co-expression Network