G87241 (ldb3,LOC107743565,LOC107696891)


Basic Information

Item Value
gene id G87241
gene name ldb3,LOC107743565,LOC107696891
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11377113 ~ 11392372 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129129
aaaggctATGCTCACAATACTCCGTTCCTGTGATATGAGCAAGGATGCGGAAGGACTTTGACTGCAGGTTGGCGGCACGACGGGCCCACTCTGACATCTCCATCTCCTTATTGTCAGGTTTGATCACAGCCTGGTAGACTGGAGAAGCACTGTCCACAAGAGGGTCTTTAATGGGAAGTGAGCTACTcccaaaaagagagaaagggaaaaaagatGATCAGTTGTCTGATCTGAGTCATCTGAATTTGGGAACATTGAGTTAAATtgacaaatcataaaaaaaggaCAATATCTGTATCTGAATTAATTCACATATTTGTGAAGATGTGCATCATTTTAATACAGTCCCATTGTAGTGAGAGATCTGTGATGAAAGAATGAGTTAGGATTTGATAAAAACTGAGTTGCTGTATTAGGAGAATGTACAGTAAAAGGTTAGAGGTTATTAAACTCTCCCCTGGCAGATATACTCAGAACATTCATATCTTTCTTTATAAAACTCCATTTACTTACATATTTCCAACAGTATAACAAGGTAATtgaaaaatgagcaaaaaaatcCACTTCAGTTTTTATGCAAACAGCCTTTAACAGAGAATATAAGATGAGAGATGAGTCAATGTGACTGTGATGGATCTAAACAGACTTTGGCTACTTACGCCAAGGGAGATCCAGCGGAGTCATCACCActgtcacatgatgaaccaggATGAAAGGGAGCAAGTCAGAGCCGGGGTCACATGGGAGGATGGGAAATATAGTGGGGGTGAGACGAGGATGAGTGATGAGGAATGGGGGATTGGTTGTGGATGGAGTGACATAATTGCAAGCAGAAGAGGGAGGAAAAGCACAGATGAGGTTAATACTACACATGACCTAGTGGAAGCCTGAAACCAGGCCAGGCTAGATGACTGATAATGAGATCTTACTGTTATAAACACTGCAAGCTAAATAGAATCGCATTgtaatcaaaaacattaaaataatgcaaataaaaagaagcTTAATGAACACAAATACTCTTCTTTTTACTAATATCTCATAAAAAAGTATAAGAATACATTctcttatattttaataaagtgttgCAGGGGTGACttttttataggttttttttttgtttgttttccaggTTCCatcattcataatttatttaaaataaataaataaaaataaagatttagcTGTTCACTTCCGGCGATTTGTTAATTTGTGAAGATTTTCTGCAATAATCCAATTGGTAATGGGACAATcctgttgtatttttgttttaaaacaaggATCATGCCAACAAACAATATGGTCAACAGAAATATGTCATCCATGTGCATTTACATTACTACATACAGTagcttatttaaatgaatagttcataaaaaaaaaatagtctctCATCTTCTGTTATTCTCTCATAACACTGGGGTGATAAACTGGCACTGTTGATCAATCTAAGTTATGGTATATCTTTTAGGGCTGTGTTTCTCGAAAGGAAAGTTTAAGTgacaatgcttttgggaaatgcatcCCCTACCACTTTTTTGTATTGGATGAATTGTTTCTCTAGTGATATAattcaaaaaaactatttgttacCAAACTGAATATTGTTTTTCACGTAAAACTACCGCATGACTTTATAAGATGTGATGTGTGATCTACTGAACACCATTTTAATTATAAGCTGCTATTAATTCCAGATTTCCAAGTTCCcttaatttttattgtgttgaaaAGAGGCTTAGGGCGTCGGGAGTCTTGTTTCtgcaataataacataatttccATTTTGAATCTGCATTAAGTATTGAAATATAATACTGTTTATATTGCAATGTCATTCACTTAGTGAGGCTTAAATGTCCATTTACGGGTCACTTACCTCAGCTATCACCTAAGCATCAGTgtagtaaaaagtaaaatgctgGACAGGAATGGAAGACCTACCTCATCTCGTTTCCTCGGGCTTGGGCCTGGCCAGCAATGGCATCCATAATGGCATCCTGAGAATACATACTAATAGGAGTGTTGTACTGGGCATGGATGATAGTAGCCTTCCCACCGGGACCCTTGACCTCAATAGGCTTGTGAGTAGACAAAGCTGAGTCCTTCAGTGCGATGGGGTTGAAGCTGGGAACATACTCTTGGCTGACCCGGGAGATGGTCAGGGGCATGTTGAAGTCTTTGCCTCCTTGCAGCCTGAAGCCCCATGGTGCAGGTCCAGACAGGGTTACTGTGTAATTGCTCATTTTGAAGAGAGTTTAAGTTTAAGTGAAAAGCTTCTTCTTGGATCAGTAAAGTCCTCtttttcctttaattttctTCTCCCTGTTGTCGGGATGACCAAACACCCGGGTACAGGCAGGCACCGAGGAGCCTCtgaaatacaacaacaacagacaGGAAATGCAATAGAGTGAAACAATATGCATTACCTTATGCCCTCTGTCACTATTCAACCATCACACAAGAACTGAGCTCACATATCAACACAACAAGAACATACCACAGAAtgatcagataaaaaaaaaacccaaacaaacagtTCAATCCCACCCCTGTTTACACTGacaaaataagtcaaaaaagttttaaaagcagAAGGAGGAGAGTTCTTGCCTGCTCGGATGGCCTGGAC
>TU129130
aaaggctATGCTCACAATACTCCGTTCCTGTGATATGAGCAAGGATGCGGAAGGACTTTGACTGCAGGTTGGCGGCACGACGGGCCCACTCTGACATCTCCATCTCCTTATTGTCAGGTTTGATCACAGCCTGGTAGACTGGAGAAGCACTGTCCACAAGAGGGTCTTTAATGGGAAGTGAGTAGACAAAGCTGAGTCCTTCAGTGCGATGGGGTTGAAGCTGGGAACATACTCTTGGCTGTCAGGGTTCAGGTGTGGGAGTGTCAGGAGAGCGGGTGGGTGATGAGCCAGGAATATTA

Function

symbol description
ldb3 Enables cytoskeletal protein binding activity. Predicted to be involved in actin cytoskeleton organization; heart development; and muscle structure development. Predicted to act upstream of or within sarcomere organization. Located in Z disc and cytoskeleton. Implicated in dilated cardiomyopathy; dilated cardiomyopathy 1C; distal myopathy; and myofibrillar myopathy 4. Biomarker of myotonic dystrophy type 1.

NR:

description
PREDICTED: LIM domain-binding protein 3-like isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129129 True 2635 lncRNA 0.38 2 11377113 11392372
TU129130 False 299 lncRNA 0.52 2 11377113 11379318

Neighbor

gene id symbol gene type direction distance location
mmrn2b LOC107749343,LOC107698811,LOC107550061,LOC107700129,LOC107582854 coding upstream 32516 11335781 ~ 11344597 (+)
glud1b glud1b,LOC107739271,LOC107700126,LOC107698813,LOC107550058,LOC107749346,LOC108430434 coding upstream 56408 11306072 ~ 11320705 (+)
epas1a LOC107698815,LOC107550055,LOC107739260,LOC107700124,LOC107582769 coding upstream 78608 11278272 ~ 11298505 (+)
prkcea prkcea,LOC107550054,LOC107698816,LOC107739250,LOC108274197,LOC108430457 coding upstream 99622 11230187 ~ 11277491 (+)
six3b six3b,LOC107550037,LOC107698799,LOC107582771,LOC107739239,LOC107749382,LOC107700110 coding upstream 164348 11210251 ~ 11212765 (+)
itgb3b itgb3,itgb3b,LOC107698806,LOC107700113,LOC107706862 coding downstream 160739 11553111 ~ 11568617 (+)
ndel1a ndel1a,LOC107706877,LOC107698805,LOC107700135,LOC107552751,LOC107727307,LOC107582761 coding downstream 177128 11569500 ~ 11578830 (+)
armc7 armc7,LOC107706878,LOC107706863 coding downstream 188204 11580576 ~ 11581865 (+)
chad LOC107552753,LOC107727306,LOC107706882,LOC107698804,LOC107675646,LOC107582760 coding downstream 193678 11586050 ~ 11594542 (+)
faap100 LOC107706879,LOC107669495,LOC107552754,LOC107727314,LOC107666926 coding downstream 210602 11602974 ~ 11607362 (+)
G87238 NA non-coding upstream 149198 11224765 ~ 11227915 (+)
LOC122355611 NA non-coding upstream 246223 11122923 ~ 11130890 (+)
LOC122355479 NA non-coding upstream 287955 11083398 ~ 11089158 (+)
G87220 LOC107749353,LOC107550036,LOC107698821,LOC107700109,LOC107728709,LOC107582776 non-coding upstream 288056 11082200 ~ 11089057 (+)
G87272 NA non-coding downstream 46033 11438405 ~ 11515996 (+)
G87282 LOC107552728,LOC107706876,LOC107700134,LOC107698791,LOC107582764,LOC107727319 non-coding downstream 81474 11473846 ~ 11541104 (+)
G87285 NA non-coding downstream 91821 11484193 ~ 11496992 (+)
G87331 NA non-coding downstream 349609 11741981 ~ 11744405 (+)
G87341 NA non-coding downstream 407984 11800356 ~ 11800627 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 794568 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 877415 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 880836 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1478112 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 1502598 9864814 ~ 9874515 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 302472 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 489779 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 544469 11936841 ~ 11945635 (+)
G87817 NA other downstream 1340392 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 1368002 12760374 ~ 12762731 (+)

Expression


Co-expression Network