G87272


Basic Information

Item Value
gene id G87272
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11438405 ~ 11515996 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129170
ctcatatgtttttttatgaaaaaagcCACTCAGACACAGGATGTAGGCGTTTGTGCAGCGCCCCTGCTGGAGTGCATTGGTAATAactttattgcaaaaatacaaGTTCACTCAACCTCAAGCATTTACAAACGAGTCCCCAATGGAAAACTTTGAAATGCCATTTCATCTTTGAGAAATCCTCCTCTCACCAGCTACAACGCGCATTCAAAGGCTGTTAACTGTACAGACATTAATAAGTAAAGATTTAACAATTCAGCAGGAAATCATTTTCTTCCTCAGTAtataggaaaaaaagaaaaaagtacttGATTTTGTCCCAGTCTGACTCTTTGCTGGTAGTTCAGGAGAGAGCATTTTGCATAGCATACTCATACACCACCTTTGCTACATTCTCAAAAATCCTTTAAAAGGAAAGGAatgaaagatgaataaatgacaaaaaaaacgtaTCTTTGTGTTAGAGCCAATCTTTGGTTAAGACGAAGTTAAATAAGATCTAGATCTCTGTAcgttatttcttttataatcaCTTTAGTTTCAGCACTCAAAGGCTTTTcatgaaaaaataacacatatcACAGCACAATATGATTAGAATGAAAAGTTGAATACTGCATTAATCATATTATATTGTGATATGAAACATCTGTTGATCAGTATCAGAGTATCATTAATATATCTCACAAATCCTATTAAGTTTATTTGAATAACAGTATGAAAGCATTCCTTGCTCAAGGCCCCATATACATAACACTGTCCAAATTTCAGGCTATCTATGCTATCAGGGCCGAACATTCTTCAGCTGTGTTGATTAAAGTAAAATCTAGAAATAATATAGATTCTACAAAAATCGAATGGGATGAGACCCCTCAACTATTACAGGCCTGAAGATCCATCATGTGCCAGACTCATATCTGTGGTTTCAGTGTCActgcaagttaaaaaaaaaatcgaatcaggtaaaataaacaataaaaaggaaGCTTAACTTGGCATATCTCCCTGTATAAATGGGAGAACTGTCAATGGaattaaaatagcagtttttcTCCAGCTTTACACTTCTGAAGTGTACTATACTTGTCTTAATGCAGATAATAATTATTACCACTAGAATTGATTAACATTCCATAACGTCATTACGTAGTTTCTCCATTCCTCTGTATATTTCTTAAGATGTTGTAGttgtttattaacaataaatttGTCTGTTAGTGTATGTTCAGTCAAACATGTACACAGTCTTTGCCTGTAACACGAGACACAAAACAGCTGTGTGCTACAGGGAATGCCCGTATCAGAGAAATAGGAGGAAAAAAGGTTAGAAGAGACAGTCTCATTCCACGCTCCGCGCCAGGGCCGCAGATTTACATGCCTGCTCTGACAAAAAGCACCAGAGCTGAGAGATGACACCGTACAAAACATCTCGATTCACTTAGTACAGGTTGAAGTACTTAGCATCTACATGTACATGACATTAACTCATCccgctacaaaaaaaaaaaaaaattgcaggaGAGCTGCTTGGAAAAAAACGTTCAGCTGAGAACTTGCATCTGTGGAACAGGCGAGGAGGAAGGGTAAAGAATGGTTTTTAATACCCTATCggtcaaaagtttgaaataattacttttttttggtaacactttagtttgtcataatacagagtaattacttACTTAGGTACGTTAAGATTAGTAGTCATGtacttacattaaataaaatgtacttatgtaactaagttatggaacagcctttaattaaagtttgtaattatgtagatgtaacaggcagctactgttacacatatgtaacagaccgagtctgttacacagcaacttacacttaagtacaatcttgatacagTTAAGTAGTTTAGGCCTGTGTAATATTCTCTAATTTTTATGCAATAAGAAAGGTTAAATCTAACTAAGGTGCAGCTAGATGcatgaagtacacttaagtacaaacTTGATACACTTTATGTCAGTGTACCtgaatttataataactttgtataaagtctgcaacataagtagctgtgtaacagactcgGCCTGTCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129170 True 2068 lncRNA 0.35 2 11438405 11515996

Neighbor

gene id symbol gene type direction distance location
mmrn2b LOC107749343,LOC107698811,LOC107550061,LOC107700129,LOC107582854 coding upstream 93808 11335781 ~ 11344597 (+)
glud1b glud1b,LOC107739271,LOC107700126,LOC107698813,LOC107550058,LOC107749346,LOC108430434 coding upstream 117700 11306072 ~ 11320705 (+)
epas1a LOC107698815,LOC107550055,LOC107739260,LOC107700124,LOC107582769 coding upstream 139900 11278272 ~ 11298505 (+)
prkcea prkcea,LOC107550054,LOC107698816,LOC107739250,LOC108274197,LOC108430457 coding upstream 160914 11230187 ~ 11277491 (+)
six3b six3b,LOC107550037,LOC107698799,LOC107582771,LOC107739239,LOC107749382,LOC107700110 coding upstream 225640 11210251 ~ 11212765 (+)
itgb3b itgb3,itgb3b,LOC107698806,LOC107700113,LOC107706862 coding downstream 37115 11553111 ~ 11568617 (+)
ndel1a ndel1a,LOC107706877,LOC107698805,LOC107700135,LOC107552751,LOC107727307,LOC107582761 coding downstream 53504 11569500 ~ 11578830 (+)
armc7 armc7,LOC107706878,LOC107706863 coding downstream 64580 11580576 ~ 11581865 (+)
chad LOC107552753,LOC107727306,LOC107706882,LOC107698804,LOC107675646,LOC107582760 coding downstream 70054 11586050 ~ 11594542 (+)
faap100 LOC107706879,LOC107669495,LOC107552754,LOC107727314,LOC107666926 coding downstream 86978 11602974 ~ 11607362 (+)
G87240 NA non-coding upstream 19193 11260106 ~ 11419212 (+)
G87241 ldb3,LOC107743565,LOC107696891 non-coding upstream 46033 11377113 ~ 11392372 (+)
G87238 NA non-coding upstream 210490 11224765 ~ 11227915 (+)
LOC122355611 NA non-coding upstream 307515 11122923 ~ 11130890 (+)
LOC122355479 NA non-coding upstream 349247 11083398 ~ 11089158 (+)
G87331 NA non-coding downstream 225985 11741981 ~ 11744405 (+)
G87341 NA non-coding downstream 284360 11800356 ~ 11800627 (+)
G87343 NA non-coding downstream 287291 11803287 ~ 11803627 (+)
G87337 chmp2a,LOC106589279 non-coding downstream 306067 11822063 ~ 11823322 (+)
G87617 NA non-coding downstream 481294 11997290 ~ 11997512 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 855860 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 938707 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 942128 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1539404 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 1563890 9864814 ~ 9874515 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 178848 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 366155 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 420845 11936841 ~ 11945635 (+)
G87817 NA other downstream 1216768 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 1244378 12760374 ~ 12762731 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G53046 NA non-coding NC_035902.1 CM008305.1 19048973 ~ 19055804 (+)