hoxb6b (hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299)


Basic Information

Item Value
gene id hoxb6b
gene name hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11882151 ~ 11884097 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129284
CGACACCCAACATCTACCGAACCGCGGACCGCTCGTGCGCTCTCGGAGGTCTGGAAGACTCGCTGGTCCTAACCCAAGACCAGTGCAAGACGGACTGCACCGAACAGGGAGCAGAGAGATATTTTAACAGCGAGGACAAACCGTGCACGCCGGTTTATCCGTGGATGCAGAGGATGAACTCGTGTAACGgaatGCCTGGCAGCACCGGCCGCAGGGGTCGTCAAACCTACACTCGGTTTCAGACTC
>XM_043253076.1
tatttttatttgttattatttcggAAAACGGTGAAAAGCACTTGCGCCTGAGTGTTTTGATATGCCCTGGGGATTCCGTTCCGCGCAACAAGAGGGCCCCCACCTTACGCGTTCTCCTGTAGTCAGAAGTGCTCAGGATTGGTCAGGCACTGATCAGCTGGTTCGTTTCCCCGCGGTCTCAGATTGGCACCTCGCCACCCCCCTTCGGCTAAAACCAAATCTCAGATAAAGTAATGGCAAAAACCGCTTGGactataaaacacaacaaatcatAACACTCGGACAATAACACTGGCCACCCCATGAGTTCCTATTTCGTCAACTCAACTTTTCCCGTGTCTCTACCCGGAGGACAGGAGTCTTTCTTGGGTCAGATACCGCTATATTCCTCTGGATATACAGATCCTTTAAGACATTATCCAAGCGCTACGTTCGGAGCTACCAATGTCCAGGACAAGGTTTACACCTCCTCGTATTACCAGCAAGCTGGGGGCGTTTTTGGGAGAAGCGGATCCGCCAGTGCTTGTGACTACACGACACCCAACATCTACCGAACCGCGGACCGCTCGTGCGCTCTCGGAGGTCTGGAAGACTCGCTGGTCCTAACCCAAGACCAGTGCAAGACGGACTGCACCGAACAGGGAGCAGAGAGATATTTTAACAGCGAGGACAAACCGTGCACGCCGGTTTATCCGTGGATGCAGAGGATGAACTCGTGTAACGgaatGCCTGGCAGCACCGGCCGCAGGGGTCGTCAAACCTACACTCGGTTTCAGACTCTCGAACTGGAAAAGGAGTTCCACTTCAACAGATATTTGACCAGAAGACGAAGAATTGAAATATCGCACGCTCTGTGTTTGACGGAGCGCCAGATAAAGATATGGTTCCAGAACCGCAGGATGAAATGGAAAAAGGAGAACAAAGTGCTGAACTCCGCAAAGGTCAGCGAAGACGAGGACGGCGGAAAGGCGGGATAGATGTTTTAAAGGAGCTCGTGACGAAGCCCTAGAAACATTGTACATAACGTGTAGCctgtagttttaattaatgagtACTGGTCTGtccaacaagaaaaaaaactacctAATGAGTTTTATGTTGacgtttaaaaaacaaaaaaacaaaaaaaagcttcaaGAGAggactttctttttcattaaaatgaatcaccTCTGTAAAGACGGTAAAAGATAGAGGCTATGGGAGGTGCTTTTATCACTGTTATATATTTTGCGGTATTTGGCCTATTTAAACTAATAAGACACGTGTTTTTGAACATTCTAATGCCTatcatttgaaacaaaacataGGTTCAAAGTTTAAAACTTTGGGATTAAAAGTCTTACATTGAATATGTATTTCAGTCCGTtgtgtgcttaaaaaaaaaaagagaagaaaatggGACGTTTTGATGCTTAATTTATTGGGTCGTCacttttgtgtatgtgtatgtgaatgCA

Function

symbol description
hoxb6b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including margin; mesoderm; nervous system; tail bud; and trunk. Orthologous to human HOXB6 (homeobox B6).

NR:

description
PREDICTED: homeobox protein Hox-B6b isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
TU129284 False 246 lncRNA 0.58 2 11882685 11883417
XM_043253076.1 True 1460 mRNA 0.45 2 11882151 11884097

Neighbor

gene id symbol gene type direction distance location
hoxb8b hoxb8b,LOC107669483,LOC107706868,LOC107552737,LOC107727302,LOC107666913 coding upstream 6472 11873649 ~ 11875679 (+)
ttll6 ttll6,LOC107582749,LOC107666932,LOC107727303,LOC107669465,LOC107706894,LOC107552736 coding upstream 10377 11863622 ~ 11871774 (+)
LOC122355327 LOC107669484,LOC107666914,LOC107727294,LOC107552729,LOC107706895 coding upstream 20579 11835273 ~ 11861572 (+)
fbrs LOC107552766,LOC107706892,LOC107666918 coding upstream 47020 11823839 ~ 11835131 (+)
msl1b msl1b,LOC107706890,LOC107552764,LOC107669485,LOC107582751,LOC107666930,LOC107727293 coding upstream 61725 11814665 ~ 11820426 (+)
hoxb5b hoxb5b,LOC107706869,LOC107727298,LOC107666910,LOC107582850,LOC107669477 coding downstream 912 11885009 ~ 11887121 (+)
skap1 skap1,LOC107666922,LOC107727295,LOC107669469 coding downstream 20985 11905082 ~ 11932134 (+)
tmem106a LOC107706900,LOC107552767,LOC107669487,LOC107666933,LOC107727317 coding downstream 61974 11946071 ~ 11949632 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107582746,LOC107727318 coding downstream 67754 11951851 ~ 11953983 (+)
dusp3a dusp3a,dusp3,LOC107669488,LOC107552769,LOC107666929,LOC107582744 coding downstream 87598 11971695 ~ 11981994 (+)
G87337 chmp2a,LOC106589279 non-coding upstream 58829 11822063 ~ 11823322 (+)
G87343 NA non-coding upstream 78524 11803287 ~ 11803627 (+)
G87341 NA non-coding upstream 81524 11800356 ~ 11800627 (+)
G87331 NA non-coding upstream 137746 11741981 ~ 11744405 (+)
G87282 LOC107552728,LOC107706876,LOC107700134,LOC107698791,LOC107582764,LOC107727319 non-coding upstream 341047 11473846 ~ 11541104 (+)
G87617 NA non-coding downstream 113193 11997290 ~ 11997512 (+)
G87621 NA non-coding downstream 183306 12067403 ~ 12067629 (+)
G87644 NA non-coding downstream 265326 12149423 ~ 12149637 (+)
LOC122355133 NA non-coding downstream 267055 12151152 ~ 12156922 (+)
G87664 NA non-coding downstream 273489 12157586 ~ 12157815 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 180496 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1299606 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1382453 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 1385874 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1983150 9883033 ~ 9899001 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 52744 11936841 ~ 11945635 (+)
G87817 NA other downstream 848667 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 876277 12760374 ~ 12762731 (+)
G88016 NA other downstream 1557846 13441943 ~ 13444915 (+)
G88082 NA other downstream 1711697 13595794 ~ 13596348 (+)

Expression


Co-expression Network