G87376


Basic Information

Item Value
gene id G87376
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10816561 ~ 10864596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129314
TTCATAggtcttaatattttatttattcatttgatttttcaaaactattttttcataataaatctTCACTTTGAGGTCATCAAAGAATtgtcacaataaaaacaaaagaaggtaTTATAGAAAAattgtacacaaataaaaaacacacaaaaacaaaaagcaacattttattcagaatgtcatatattttataCCTCTTGTACATTCCACACAGTACAAGATAGCAGAGAGAATGTTTGCAAACACTTTTGGAGGGTTGTTTTTCGCGATCTTTGTGCTTTTTAGCTGTTATCCAATACTCCATTTTGGGGGGCTGAATTCATTTGTTACTTTTTGAGATTATGATATTATCTCTCGGTAGACTCGGAGTCCTAAATACCATGCATAATTTGTTTGGTCACTAAGACAAGCAAGAGGATATTGCTTAAACAGTCCAAAATCTTATTTTCCACATGTCTGTTTGCTTTCCAAAACCTATACTCGTACTCGTCTTTTAATGTTgacacaacagcaaaaaaaaactaaaaatctaaacaaaaaaaatgaaacaaaaaagaggGGAGTATGTCAAAAAAACGGATGTTGGAGATGCAcataaaaagggaaaataaaatctgtatagCTAATGGCAGAAACGGTTCTATCGCTATAGcaacacattaacatttaagtttttcatttgttttcaccttggttttttctaaaaaaaaaaaaaaaaaaaaaaaaaaaagAGCATGTTTTAATA
>TU129316
TTCATAggtcttaatattttatttattcatttgatttttcaaaactattttttcataataaatctTCACTTTGAGGTCATCAAAGAATtgtcacaataaaaacaaaagaaggtaTTATAGAAAAattgtacacaaataaaaaacacacaaaaacaaaaagcaacattttattcagaatgtcatatattttataCCTCTTGTACATTCCACACAGTACAAGATAGCAGAGAGAATGTTTGCAAACACTTTTGGAGGGTTGTTTTTCGCGATCTTTGTGCTTTTTAGCTGTTATCCAATACTCCATTTTGGGGGGCTGAATTCATTTGTTACTTTTTGAGATTATGATATTATCTCTCGGTAGACTCGGAGTCCTAAATACCATGCATAATTTGTTTGGTCACTAAGACAAGCAAGAGGATATTGCTTAAACAGTCCAAAATCTTATTTTCCACATGTCTGTTTGCTTTCCAAAACCTATACTCGTACTCGTCTTTTAATGTTgacacaacagcaaaaaaaaactaaaaatctaaacaaaaaaaatgaaacaaaaaagaggGGAGTATGTCAAAAAAACGGATGTTGGAGATGCAcataaaaagggaaaataaaatctgtatagCTAATGGCAGAAACGGTTCTATCGCTATAGcaacacattaacatttaagtttttcatttgttttcaccttggttttttctaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaatgcagagatGAGGTAAACTTTAGAAGGATAATGATCCTGGGTTAAATTCCGGTCTTCAcggcatttaaaaacacaaaatcctCCACAAAGAAACCACGGAATCTGATCCAGTACTCCAGTAAGGTAGGCGTAGTGGTGTAGTGGAGAAGAGGGCGAAAAGAGTGAGCAGCCTTTGTTACAGACCTCCCAGCAGTCCTGGACTTTTGCTACTGCCTGAATCCCAGCCGAATCCCATGAAGACAAGGCTGCATCCCTCGTTATCCCCGTTGAGAGAATAGGAGAGGAGCAGGGAGACTACCAGAAGCGATGGCACACACAAGACGAGATCGCCGCTGCAGCATTTAACTCAATACAGAGTGCCTCTCCCCCTCCCCAAAcgacaaacacactctctctcacacacacacacaccacacaagagctgctgctgctgctgcttctgctgctgcCTGGCTGGCTGAGACCGCACTGACTCTCAGAGGAAACATTAACAGACACAGACCAGAAGAGGACAGGAAGAGAGAACCAAGAAAGGGCAAGAGTGGTCAAGTGCTCCTCATGTGAAAAAGGTGCTCAGAGTTTCTGAAAATGTCAGCTTTAAGAAAGTCCCTCCTCTTCTCTCACTCCTTACACCGTCTCTGTATCGGAAGCGTTCCTAAGCAGCATGCTTAGAGGAAAAGACCCTCTGAATGAAGAGAAGGGGAAACAGAGAACGGTGAAGCTTGGCTGAGTTTTCCTCCccctcttttcctctctccctcccccTCGATCATCAGGGAGGCGCGTGCAGCTGTGGAAAGGGGGGTCTCGTGTCTCGTCCTCCTAAtcgttctttctctcttcctgtcttcGTTTCTCCTTGACAGAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129314 False 745 lncRNA 0.29 2 10816561 10864596
TU129316 True 1611 lncRNA 0.41 2 10817958 10864596

Neighbor

gene id symbol gene type direction distance location
chac2 chac2,LOC107749368,LOC107686371 coding downstream 203059 10610648 ~ 10613502 (-)
LOC122355804 nrg3b,LOC107566665,LOC107573948,LOC107678479,LOC107689960 coding downstream 671832 10138438 ~ 10144729 (-)
LOC122355287 fam20cb,fam20c,LOC107734234,LOC107699871,LOC107669229,LOC107731385,LOC108432010 coding downstream 1011051 9788025 ~ 9805510 (-)
LOC122355272 cpped1,LOC107584109,LOC107669238,LOC107554009 coding downstream 1060514 9743392 ~ 9756047 (-)
LOC122355289 ercc4,LOC107734247,LOC107669240,LOC107692079 coding downstream 1076033 9734537 ~ 9740528 (-)
foxn2b LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647 coding upstream 35657 10900253 ~ 10915884 (-)
fbxo11b fbxo11b,fbxo11,LOC107728720,LOC107582786,LOC107550041,LOC107673644,LOC107698831,LOC108430631 coding upstream 54183 10918779 ~ 10931157 (-)
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding upstream 67266 10931862 ~ 10938013 (-)
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding upstream 120446 10985042 ~ 10996581 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding upstream 147876 11012472 ~ 11027430 (-)
G87388 NA non-coding downstream 11823 10793063 ~ 10804738 (-)
G87164 NA non-coding downstream 210542 10605232 ~ 10606019 (-)
G87125 svila,svil,LOC107584371 non-coding downstream 234025 10578754 ~ 10582536 (-)
LOC122355705 nrg3b,LOC107678479,LOC108426474,LOC107689960,LOC108273971,LOC107566665,LOC107387893 non-coding downstream 371783 10409339 ~ 10444778 (-)
G87104 NA non-coding downstream 455147 10360877 ~ 10361414 (-)
LOC122355137 NA non-coding upstream 4252 10868848 ~ 10894717 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding upstream 31245 10895841 ~ 10896147 (-)
G87429 mta3,LOC107749351,LOC105904126 non-coding upstream 206653 11071249 ~ 11071765 (-)
G87449 NA non-coding upstream 244300 11108896 ~ 11165039 (-)
G87450 NA non-coding upstream 259851 11124447 ~ 11126279 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 876712 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1327249 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 1938430 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 2128991 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 2129013 8682443 ~ 8687548 (-)
cript cript,LOC107582781,LOC107728714 other upstream 140410 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 178292 11042888 ~ 11045889 (-)
G87489 NA other upstream 456827 11321423 ~ 11322603 (-)
G87569 NA other upstream 968283 11832879 ~ 11835612 (-)
G87608 NA other upstream 1083944 11948540 ~ 11951155 (-)

Expression


Co-expression Network