G87417


Basic Information

Item Value
gene id G87417
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11312472 ~ 11315998 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129370
ATTTCAAGGAAGTGAGAGGTACTAGAAGCTGACATAGGATTAACTCTTCCCTTTTTGTGTCAGCAAAACATTTAGTCAGTATACCATGCTGTCACTTGGTTATTCCagcccaaaataaaataaaagtatgtaaTTGTTTACCAACCCTCATTTAGTTACAAACCTTATAACTTAATGTGCCACAAGAATAACATAAGTTTTGCATAATATTGACAGTGCTTCTTTCTATACAACTAAaccatatttagattttttcttttagctCAAATATTCCTGGTCACAATATAAGAACataaaagaacagcatgaacattctgctaaacctCTCTATTTGAGTTACTTCTCTCTATCAATATAAGGTTTATTGCTAAAAACTAAGGGTTAGTTTAATTCCAATAAGAAAGTAAGAAAGTAAGTTAAGTAAGAAAGCTAGTTAAAAGTGAAGCTCAACAGTTCAAACTGTGGTTTATACCTGAATAATAAAGGTTTTATCAGCAAATCCAGGTGTCAGGCCCAGTTTGCTCATGTAGGAGGCTTCATTGATGAAATTCTCTATGCCATGGAATACTCCACGCCCAGTGGCTGAGATTCTGCCATGGATACCCCCCTGACTAATAGGTTTACCCGTCACACAGGCGTGGGCATTGATATAGTGTGGGCAATAGTGTTAGCGTAAGTGTCAGCGATCCAGGACATTTCCCTCTCACCGGTGCTCATGTCAGGGGCAGGTACATCAATGCCAGGTCCTGAATGGAAAGAAAAGgggatatgttttttttacagctttagATGATATGAAAGCAGACTGGTGGTCATGTGACCAGACACAGGGACCGATCTAGTTTTGAGTCAGTTATTATGAACTATGCTGATTGTTCTTTAAC

Function

GO:

id name namespace
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU129370 True 884 lncRNA 0.38 2 11312472 11315998

Neighbor

gene id symbol gene type direction distance location
six2b LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330 coding downstream 92920 11217292 ~ 11219552 (-)
zfp36l2 zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775 coding downstream 189634 11119418 ~ 11122838 (-)
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding downstream 228436 11082205 ~ 11084036 (-)
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding downstream 257666 11049679 ~ 11054806 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding downstream 285042 11012472 ~ 11027430 (-)
sncgb LOC108430421,LOC107550059,LOC107700127 coding upstream 8403 11324401 ~ 11331793 (-)
bmpr1ab bmpr1a,bmpr1ab,LOC107749344,LOC107698810,LOC107550060,LOC107739296,LOC107582766,LOC108274296 coding upstream 28461 11344459 ~ 11374806 (-)
ldb3b ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793 coding upstream 59797 11375795 ~ 11392390 (-)
opn4b opn4b,LOC107552747,LOC107739286,LOC107582762 coding upstream 78259 11394257 ~ 11420206 (-)
usp54b LOC107698809,LOC107706875,LOC107720824,LOC107582762 coding upstream 124771 11440769 ~ 11528254 (-)
G87409 NA non-coding downstream 13938 11259017 ~ 11298534 (-)
G87484 NA non-coding downstream 28886 11278324 ~ 11283586 (-)
G87482 NA non-coding downstream 39170 11271741 ~ 11273302 (-)
G87449 NA non-coding downstream 147433 11108896 ~ 11165039 (-)
G87450 NA non-coding downstream 186193 11124447 ~ 11126279 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding upstream 385 11316383 ~ 11318921 (-)
LOC122355534 NA non-coding upstream 263190 11579188 ~ 11580359 (-)
G87547 NA non-coding upstream 437051 11753049 ~ 11790926 (-)
G87551 NA non-coding upstream 483007 11799005 ~ 11799343 (-)
G87552 NA non-coding upstream 483594 11799592 ~ 11800481 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 266583 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 305518 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1372623 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1823160 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 2434341 8875617 ~ 8878131 (-)
G87489 NA other upstream 5425 11321423 ~ 11322603 (-)
G87569 NA other upstream 516881 11832879 ~ 11835612 (-)
G87608 NA other upstream 632542 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1333385 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1435906 12751904 ~ 12752678 (-)

Expression


Co-expression Network