cript (cript,LOC107582781,LOC107728714)


Basic Information

Item Value
gene id cript
gene name cript,LOC107582781,LOC107728714
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11005006 ~ 11006954 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129382
CTAGACTAAGCAGTGTTTCTAGCTTCGTTTTTACAACAACTGAGAACTATCTAGACGTGTTAGCTAAGATTTTCGGACTAATTTGAAGATGGTTTGCGAGAAGTGCGAGAAGAAGCTGGGGCGAGTCATTACGCCTGACACCTGGAAAGATGGGGCTAGAAACACAACAGAAAGCGGTGGTCGAAAgctcaatgaaaataaaatgctcacGTCAAAAAAAGCCAGGTTTGATCCGTATGGGAAATCTGGCTTTGCCACATGCAGAATATGCAAAAGCTCTGTACATCAGTCTGGTTCGCATTACTGTCAGGGATGCGCTTACAAAAAAGgAATTTGTGCTATGTGTGGGAAGAAGGTTCTCGACACAAAGAACTACAAACAGACTTCGGTTTGATTCGTTATTGCTTGATGGAGATTCATCTTTAGCTAAGAAGGGGATGTTTGTGGATGTATGTGTTGACTCTTCCGAGTGTTGAGAATGATCACTTGAGTTCACAAAAGAGTTTTGATTGAAGCGTTTTGTGGTGCAAAAGGAGTGCACTAGTTCAtgactgtatttatataatatgtcgGTTGTATTTTTTCTCTCACTAAACAAACTTAGAGCAATATATTGGCTTGTACTGTTTGGACAATGTAGATGCCTTTGAGTACATTTGCTGGGGAACATTCTTTGAACATGTTCTTATTCATTTGTaaccttttcttttaaagcaaatGATTTATTCGTTTTAATGCTACCAAACAAGATGACAGTGATTATGCCATTTAGTTTAAACGACTTTTCTTAGTGATAATctattggctttttttttcttttctttttttgccgtTTGACCTTACCTAGACTTTGACTTTTTAATGTTATCTCTTCCCTCAATGACGGAAATATGAATACATCTATCTTGTTTAAAGCGATATATCCTCTACTGTTTTCACTATCCTGCAtctgtgtaaattaaataaaataaagtgtaaatatgaaacaaataGACAGTGACATACCAATATAGGACAGCTACGTTCAGTGTACAGTGATGTTTATGGTCTGTTCCCACTTTGTATTGTTCTCCCATTGGTTCTTTTTGTCAACACTGATCCAGATATTTGTTGTTTCCTTTTTAGTcataatttagaattaaatttcTTTTGGATCCACATAATTGTATGATATTAGGGTTTGTAGAAATTAACTGTTGTGGATGCTCttacgtatttttttttttgacaattcaCAGCATAGCAATACATAGATTCTGTATAACATAATTTCCCTAATATCAGTTAAATTAAGAATGATCTGGGACACCTATTACAACGTGAGACTGTTTTTacatctgtaaatatttattgacaaataaaattgtgacaa
>XM_043253701.1
tgacaatgttACGTCACTAGACTAAGCAGTGTTTCTAGCTTCGTTTTTACAACAACTGAGAACTATCTAGACGTGTTAGCTAAGATTTTCGGACTAATTTGAAGATGGTTTGCGAGAAGTGCGAGAAGAAGCTGGGGCGAGTCATTACGCCTGACACCTGGAAAGATGGGGCTAGAAACACAACAGAAAGCGGTGGTCGAAAgctcaatgaaaataaaatgctcacGTCAAAAAAAGCCAGGTTTGATCCGTATGGGAAATCTGGCTTTGCCACATGCAGAATATGCAAAAGCTCTGTACATCAGTCTGGTTCGCATTACTGTCAGGGATGCGCTTACAAAAAAGgAATTTGTGCTATGTGTGGGAAGAAGGTTCTCGACACAAAGAACTACAAACAGACTTCGGTTTGATTCGTTATTGCTTGATGGAGATTCATCTTTAGCTAAGAAGGGGATGTTTGTGGATGTATGTGTTGACTCTTCCGAGTGTTGAGAATGATCACTTGAGTTCACAAAAGAGTTTTGATTGAAGCGTTTTGTGGTGCAAAAGGAGTGCACTAGTTCAtgactgtatttatataatatgtcgGTTGTATTTTTTCTCTCACTAAACAAACTTAGAGCAATATATTGGCTTGTACTGTTTGGACAATGTAGATGCCTTTGAGTACATTTGCTGGGGAACATTCTTTGAACATGTTCTTATTCATTTGTaaccttttcttttaaagcaaatGATTTATTCGTTTTAATGCTACCAAACAAGATGACAGTGATTATGCCATTTAGTTTAAACGACTTTTCTTAGTGATAATctattggctttttttttcttttctttttttgccgtTTGACCTTACCTAGACTTTGACTTTTTAATGTTATCTCTTCCCTCAATGACGGAAATATGAATACATCTATCTTGTTTAAAGCGATATATCCTCTACTGTTTTCACTATCCTGCAtctgtgtaaattaaataaaataaagtgtaaatatgaaacaaataGACAGTGACATACCAATATAGGACAGCTACGTTCAGTGTACAGTGATGTTTATGGTCTGTTCCCACTTTGTATTGTTCTCCCATTGGTTCTTTTTGTCAACACTGATCCAGATATTTGTTGTTTCCTTTTTAGTcataatttagaattaaatttcTTTTGGATCCACATAATTGTATGATATTAGGGTTTGTAGAAATTAACTGTTGTGGATGCTCttacgtatttttttttttgacaattcaCAGCATAGCAATACATAGATTCTGTATAACATAATTTCCCTAATATCAGTTAAATTAAGAATGATCTGGGACACCTATTACAACGTGAGACTGTTTTTacatctgtaaatatttattgacaaataaaattgtgacaaca

Function

symbol description
cript Predicted to enable PDZ domain binding activity and microtubule binding activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to be located in cytoplasm. Predicted to be active in dendrite. Orthologous to human CRIPT (CXXC repeat containing interactor of PDZ3 domain).

NR:

description
PREDICTED: cysteine-rich PDZ-binding protein

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K24826 CRIPT; cysteine-rich PDZ-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU129382 False 1372 lncRNA 0.35 5 11005008 11006938
XM_043253701.1 True 1390 mRNA 0.35 5 11005006 11006954

Neighbor

gene id symbol gene type direction distance location
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding downstream 8425 10985042 ~ 10996581 (-)
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding downstream 66993 10931862 ~ 10938013 (-)
fbxo11b fbxo11b,fbxo11,LOC107728720,LOC107582786,LOC107550041,LOC107673644,LOC107698831,LOC108430631 coding downstream 73849 10918779 ~ 10931157 (-)
foxn2b LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647 coding downstream 89122 10900253 ~ 10915884 (-)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 391504 10610648 ~ 10613502 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding upstream 5518 11012472 ~ 11027430 (-)
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding upstream 42725 11049679 ~ 11054806 (-)
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding upstream 75251 11082205 ~ 11084036 (-)
zfp36l2 zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775 coding upstream 112464 11119418 ~ 11122838 (-)
six2b LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330 coding upstream 210338 11217292 ~ 11219552 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding downstream 108859 10895841 ~ 10896147 (-)
LOC122355137 NA non-coding downstream 110289 10868848 ~ 10894717 (-)
G87376 NA non-coding downstream 140410 10816561 ~ 10864596 (-)
G87388 NA non-coding downstream 200268 10793063 ~ 10804738 (-)
G87164 NA non-coding downstream 398987 10605232 ~ 10606019 (-)
G87429 mta3,LOC107749351,LOC105904126 non-coding upstream 64295 11071249 ~ 11071765 (-)
G87449 NA non-coding upstream 101942 11108896 ~ 11165039 (-)
G87450 NA non-coding upstream 117493 11124447 ~ 11126279 (-)
G87409 NA non-coding upstream 252063 11259017 ~ 11298534 (-)
G87482 NA non-coding upstream 264787 11271741 ~ 11273302 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1065157 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1515694 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 2126875 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 2317436 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 2317458 8682443 ~ 8687548 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 35934 11042888 ~ 11045889 (-)
G87489 NA other upstream 314469 11321423 ~ 11322603 (-)
G87569 NA other upstream 825925 11832879 ~ 11835612 (-)
G87608 NA other upstream 941586 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1642429 12649383 ~ 12675472 (-)

Expression


Co-expression Network