G87429 (mta3,LOC107749351,LOC105904126)


Basic Information

Item Value
gene id G87429
gene name mta3,LOC107749351,LOC105904126
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11071249 ~ 11071765 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129386
TGGAGGACAGGCAGTCTTTATTGGAAATGGGGTGGGGAGAatacaaaaaccaaaataaaatataataacaataattataattataataataataaaaacagtacgaGACAGAAGATGGAGGGGAGGAATGACAGCGAGATGTGGACAGGTGTGGTCGGGGAACAAAGCGGGTGGGAcagtgtgtgtgtgtgtgtgtgtgtgtttgcacgcGAGGCTGAAGTTAGGAATTTAAAGAGCTCTTACACTCCGCCTTTATGGCACCACAGTTAATGGGCACAAAGGGGCGGCGCGCGGCCCGGCGCAGCCTGATGAGATCACGGCACATGTGACGCGCCAGCTTGGTGAGGCGCGTGGCCTGCAGGAGGAACGCCTGCTTAGTCTTCATGGAGGATTTGGGGCTGCCGCTGTTCCTTATCGGAACCATGTGGGAAGACTGACGGGCGCCATGGCCACGAGAACGCATCT

Function

symbol description
mta3 Predicted to enable histone deacetylase binding activity; transcription coactivator activity; and transcription corepressor activity. Acts upstream of or within primitive hemopoiesis. Predicted to be located in nucleus. Predicted to be part of NuRD complex. Predicted to be active in nucleoplasm. Is expressed in blastodisc; central nervous system; and intermediate cell mass of mesoderm. Orthologous to human MTA3 (metastasis associated 1 family member 3).

NR:

description
PREDICTED: metastasis-associated protein MTA3-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129386 True 465 lncRNA 0.51 2 11071249 11071765

Neighbor

gene id symbol gene type direction distance location
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding downstream 16443 11049679 ~ 11054806 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding downstream 43819 11012472 ~ 11027430 (-)
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding downstream 74668 10985042 ~ 10996581 (-)
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding downstream 133236 10931862 ~ 10938013 (-)
fbxo11b fbxo11b,fbxo11,LOC107728720,LOC107582786,LOC107550041,LOC107673644,LOC107698831,LOC108430631 coding downstream 140092 10918779 ~ 10931157 (-)
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding upstream 10440 11082205 ~ 11084036 (-)
zfp36l2 zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775 coding upstream 47653 11119418 ~ 11122838 (-)
six2b LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330 coding upstream 145527 11217292 ~ 11219552 (-)
sncgb LOC108430421,LOC107550059,LOC107700127 coding upstream 252636 11324401 ~ 11331793 (-)
bmpr1ab bmpr1a,bmpr1ab,LOC107749344,LOC107698810,LOC107550060,LOC107739296,LOC107582766,LOC108274296 coding upstream 272694 11344459 ~ 11374806 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding downstream 175102 10895841 ~ 10896147 (-)
LOC122355137 NA non-coding downstream 176532 10868848 ~ 10894717 (-)
G87376 NA non-coding downstream 206653 10816561 ~ 10864596 (-)
G87388 NA non-coding downstream 266511 10793063 ~ 10804738 (-)
G87164 NA non-coding downstream 465230 10605232 ~ 10606019 (-)
G87449 NA non-coding upstream 37131 11108896 ~ 11165039 (-)
G87450 NA non-coding upstream 52682 11124447 ~ 11126279 (-)
G87409 NA non-coding upstream 187252 11259017 ~ 11298534 (-)
G87482 NA non-coding upstream 199976 11271741 ~ 11273302 (-)
G87484 NA non-coding upstream 206559 11278324 ~ 11283586 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 25360 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 64295 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1131400 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1581937 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 2193118 8875617 ~ 8878131 (-)
G87489 NA other upstream 249658 11321423 ~ 11322603 (-)
G87569 NA other upstream 761114 11832879 ~ 11835612 (-)
G87608 NA other upstream 876775 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1577618 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1680139 12751904 ~ 12752678 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G160925 mta3,LOC105904126,LOC106516625,LOC107749351 unknown CM030143.1 CM030143.1 17908754 ~ 17910853 (-)
mexican tetra (Astyanax mexicanus) G53437 LOC107749351,LOC108273982 non-coding NC_035902.1 CM008305.1 20345482 ~ 20346063 (+)