LOC122355534


Basic Information

Item Value
gene id LOC122355534
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11579188 ~ 11580359 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129509
TCCGTGTGGAGGTCAGAACTACTGTTTTACTGCGAGTGTTTCTTTCTTACGACTGTTTTCTTCTTACGCgaagattttacattttcagcatgaaaCAGTCCAAACTGTCGGCTAGAAAGCGTCTTACAAAACCGATTCTTTTTGGGACACTACTCGTAGGTTTGGCCACAGCATTTTTCAATAGACATTTGTTCATGGAGGACCTGGCAGATCTCAGGGAGCAGGAACGATGCCACAACGAGtgCAGGGGGCAGGTGAGATGACTGATGGAATCCTGGAGGAAATCAACActgaagaaaactttttttttttttgccatcttCGTTGTTCTGATATTGCTGTATTTGGACAGACGTTGCATGGAAAATACATGAGTGATGTAGTAAGCAATGATTGCCTTGATCATATTTAGCTGTAACAGCTGGATTTGCAAGAGGATTagaattgtaaatattattggGCAAAACGAATATGTCTTATTCCTGCCACTGACAAAAGCTACTTGGATTTTATTGAAAGCACGTTTTGTACAGTCAacaatttctaaatattacaaacaatctTCATCAGTTACAAgcctaaaaaaaagcattttatgtaccatttcttaaaacatttataaaattatgaataaattgtTACACTGTGCAGTTAGCAATAAAGCCTTATCTAAATTCCTTTTACCTGTTATCCTATAGTTTGTATCACTG
>XR_006252227.1
TATTCATCCGTGTGGAGGTCAGAACTACTGTTTTACTGCGAGTGTTTCTTTCTTACGACTGTTTTCTTCTTACGCgaagattttacattttcagcatgaaaCAGTCCAAACTGTCGGCTAGAAAGCGTCTTACAAAACCGATTCTTTTTGGGACACTACTCGTAGGTTTGGCCACAGCATTTTTCAATAGACATTTGTTCATGGAGGACCTGGCAGATCTCAGGGAGCAGGAACGATGCCACAACGAGGCCAAACGGCTGGAGGTgctggagaggaggaggaaacaAATATATGAACttgaagagaaaaagagtgCAGGGGGCAGGTGAGATGACTGATGGAATCCTGGAGGAAATCAACActgaagaaaactttttttttttttgccatcttCGTTGTTCTGATATTGCTGTATTTGGACAGACGTTGCATGGAAAATACATGAGTGATGTAGTAAGCAATGATTGCCTTGATCATATTTAGCTGTAACAGCTGGATTTGCAAGAGGATTagaattgtaaatattattggGCAAAACGAATATGTCTTATTCCTGCCACTGACAAAAGCTACTTGGATTTTATTGAAAGCACGTTTTGTACAGTCAacaatttctaaatattacaaacaatctTCATCAGTTACAAgcctaaaaaaaagcattttatgtaccatttcttaaaacatttataaaattatgaataaattgtTACACTGTGCAGTTAGCAATAAAGCCTTATCTAAATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129509 False 710 lncRNA 0.37 3 11579188 11580353
XR_006252227.1 True 748 lncRNA 0.38 2 11579221 11580359

Neighbor

gene id symbol gene type direction distance location
synpo2lb synpo2lb,LOC107706876,LOC107727319,LOC107700134,LOC107582764,LOC107552728,LOC107698791 coding downstream 28763 11536670 ~ 11550425 (-)
myoz1b myoz1b,LOC107700112,LOC107706866,LOC107727320,LOC107582765,LOC107552748 coding downstream 44235 11529051 ~ 11534953 (-)
usp54b LOC107698809,LOC107706875,LOC107720824,LOC107582762 coding downstream 50934 11440769 ~ 11528254 (-)
opn4b opn4b,LOC107552747,LOC107739286,LOC107582762 coding downstream 158982 11394257 ~ 11420206 (-)
ldb3b ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793 coding downstream 186798 11375795 ~ 11392390 (-)
acsf2 acsf2,LOC107698803,LOC107706880,LOC107552752,LOC107727305,LOC107582759,LOC107675647 coding upstream 2803 11583162 ~ 11601481 (-)
tap2t si:dkey-57h18.2,LOC107582758,LOC107727316,LOC107657063 coding upstream 26665 11607024 ~ 11612294 (-)
slc16a5a slc16a5a,slc16a5,LOC107666920,LOC107669499,LOC107706881,LOC107582757,LOC107736668 coding upstream 32383 11612742 ~ 11621002 (-)
kctd2 kctd2,LOC107666921,LOC107727321,LOC107582756,LOC107669473,LOC108410512 coding upstream 43739 11624098 ~ 11629888 (-)
hexdc LOC107669475,LOC107706886,LOC107552734,LOC107727297,LOC107582853,LOC107666907 coding upstream 49965 11630324 ~ 11633883 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding downstream 260267 11316383 ~ 11318921 (-)
G87417 NA non-coding downstream 263190 11312472 ~ 11315998 (-)
G87409 NA non-coding downstream 280654 11259017 ~ 11298534 (-)
G87484 NA non-coding downstream 295602 11278324 ~ 11283586 (-)
G87482 NA non-coding downstream 305886 11271741 ~ 11273302 (-)
G87547 NA non-coding upstream 172690 11753049 ~ 11790926 (-)
G87551 NA non-coding upstream 218646 11799005 ~ 11799343 (-)
G87552 NA non-coding upstream 219233 11799592 ~ 11800481 (-)
G87593 NA non-coding upstream 310575 11890934 ~ 11894512 (-)
G87603 NA non-coding upstream 356682 11937041 ~ 11937682 (-)
G87489 NA other downstream 256585 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 533299 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 572234 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1639339 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 2089876 9481559 ~ 9489312 (-)
G87569 NA other upstream 252520 11832879 ~ 11835612 (-)
G87608 NA other upstream 368181 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1069024 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1171545 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 1843949 13424308 ~ 13432195 (-)

Expression


Co-expression Network