G87552


Basic Information

Item Value
gene id G87552
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11799592 ~ 11800481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129565
CcttaactaaatatttagctgaagCATCTTCACAGTTTCAAGTCTTTGATTGTTTGATGCAACAagcttttcacatttatttgccACTCCTCTCCTCATCCTCTTcacctctcaagctctgtcaggttggatgggggcagatgcacatgttcaggtttctccagaaatatttgatttggtTCAATCCCAGGCTGTGGCTGggccactcaaggacattcacagagttgtcTTTAAACCACTTTTGCTCTGTGCATAGGGTCATTGTCCGGTTGGAAGGTGAGTTTCTGATTGCTCTGGACtgggttttctttaaggccatCTCTATATTTTACTGAACTGAGCGTTCCTTCTAGTCTGAGGAGCCCCTCAGTCCCTGTCACTGAAAAACGCTAccagcacactttacttttgaGATGGTAATCTGCAGGTGATGAGCAGAGCTGGTTTCCTTAAAACAGGATTGTTAGAATCTAGGttcatcagaccagagaatcTTGTTTCTCACAGTCTGAGAGCTCTTTAGTTGCTTTTTTGCACATTCCAAGTGTGTATTCATGTGTCTTCACTGAGGAAAGGACTGAGTCTTGCCAAAGCCCAAAGTGATGAAGTGTTGCAGTGATGTTCGTCCTTCTGTAGATTTCTTCTATCTCCACATATGAGCATGGAGCTCAACTAGAGTGACCATCAGGTTCTTGTTCACCACGATAACCAATGCCATTTTccatcagttgctcagtttgGCCAGGTGACTAGATTCAGGAAGAGTCATGATTGTTTCAATTAAGGTTTATGAAGACTACATGCTTCTGAAGtagtttttttctgaacttTTCCACTGATGCTTGGCTGTTTCTCAGCTTTTCAGGCAGTTCCTTTGATCTCAATGTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129565 True 890 lncRNA 0.43 1 11799592 11800481

Neighbor

gene id symbol gene type direction distance location
zeb1b zeb1b,LOC107706887,LOC107669492,LOC107552760,LOC107666916,LOC107582755,LOC107727309 coding downstream 57631 11685789 ~ 11741961 (-)
hexdc LOC107669475,LOC107706886,LOC107552734,LOC107727297,LOC107582853,LOC107666907 coding downstream 165709 11630324 ~ 11633883 (-)
kctd2 kctd2,LOC107666921,LOC107727321,LOC107582756,LOC107669473,LOC108410512 coding downstream 169704 11624098 ~ 11629888 (-)
slc16a5a slc16a5a,slc16a5,LOC107666920,LOC107669499,LOC107706881,LOC107582757,LOC107736668 coding downstream 178590 11612742 ~ 11621002 (-)
tap2t si:dkey-57h18.2,LOC107582758,LOC107727316,LOC107657063 coding downstream 187298 11607024 ~ 11612294 (-)
chmp2a bc2,chmp2a,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding upstream 20060 11820541 ~ 11823268 (-)
psme3 psme3,LOC107669474,LOC107582747,LOC107706898,LOC107727296,LOC107666924 coding upstream 131942 11932423 ~ 11936456 (-)
dhx8 dhx8,LOC107706906 coding upstream 303397 12103878 ~ 12112775 (-)
uts2r2 ogfod3,zgc:195081,LOC107743776,LOC107691211,LOC106959269 coding upstream 647555 12448036 ~ 12472207 (-)
psmd11b psmd11,psmd11b,LOC108426450,LOC107743775,LOC107568948,LOC107691212 coding upstream 672408 12472889 ~ 12480834 (-)
G87551 NA non-coding downstream 249 11799005 ~ 11799343 (-)
G87547 NA non-coding downstream 8666 11753049 ~ 11790926 (-)
LOC122355534 NA non-coding downstream 219233 11579188 ~ 11580359 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding downstream 480671 11316383 ~ 11318921 (-)
G87417 NA non-coding downstream 483594 11312472 ~ 11315998 (-)
G87593 NA non-coding upstream 90453 11890934 ~ 11894512 (-)
G87603 NA non-coding upstream 136560 11937041 ~ 11937682 (-)
G87605 NA non-coding upstream 143591 11944072 ~ 11945631 (-)
G87607 NA non-coding upstream 146426 11946907 ~ 11947734 (-)
G87610 NA non-coding upstream 170048 11970529 ~ 11970824 (-)
G87489 NA other downstream 476989 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 753703 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 792638 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1859743 9311653 ~ 9939849 (-)
G87569 NA other upstream 32398 11832879 ~ 11835612 (-)
G87608 NA other upstream 148059 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 848902 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 951423 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 1623827 13424308 ~ 13432195 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G427157 NA non-coding NC_048569.1 CM023223.2 64708978 ~ 64709770 (+)
rainbow trout (Oncorhynchus mykiss) G1257685 NA non-coding NC_048579.1 CM023233.2 10896019 ~ 10896249 (-)
striped catfish (Pangasianodon hypophthalmus) G407650 NA non-coding NC_047624.1 CM018570.1 3413950 ~ 3415159 (-)