G1525


Basic Information

Item Value
gene id G1525
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3265729 ~ 3267405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU1721
AGAGCATTATATGCTCCATGTCTTACCCACAAACATCACGCCTTCCTTGGTCTTCTCTGCGGCCACCGCAACGCCTTCCTTGGTTTTCTCTGCGGCCACTGCCATACCTTCTTTAGCTTTAGAAAGCCCCTTCATAAAAACATCCATCTTGGCCCTTTTAAAGCACCTTCTTCGTCCTTATGCTTCAATTGCGTAGTAGATTGAAATATCGTGGAAGGAAATTTTACACTACGATCTTGAGGTGGGCCTTCCTCTGGATGCGCTCAGCCAATGAGGACGAGAGGATGAGACGATCGACGTAGCTCATGGTATTGATCTTGGGGGTGTCAGTCCCCGGCTGTTATGGCCTGTGACACAGTGAGACTAACGCTGCATCCTTATCATATAAAAAGGAGACTGAGATCGTCAGGAGATGAGGCGCTCAAATTGCACATCTGCTTCACACTACTGTCAGGTGTTATTTGATCATTTGCACCTACTCACAGAGGACGTGTGATAGTCTTCCCTTCATACGTGTTTCATATTTCATCTTCAGGAGAGAAATATTTATCACTGACACTTCACTAAGAAGCATATCATAGAGAGACACGGTTAGACATTGTATTGTAAATTCAAATTAAAATGCTGTCGATCCTAGGCTTGCTCATGCATATCTTGTTGGGATTTTCGGCAGGCGATGAGTGTCGTGTCCACTGTCCATCTGCTTGAAGTGGGCGCATCGTGACATCTGCCTCTGAAAGGCAATCGAACGGCTCGACGGACCAATTGATTTTGTCCAAGCCTGTTTAAAGTCTTGTAAAGGTACCAGCTGGTGATTAAAAGTTTCCATTGTCAATACTTTCCTATGTCGAACGATCTGTCTAGAATACGTATTTTCGTGTAGGCCTACATATGTTTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU1721 True 900 lncRNA 0.35 2 3265729 3267405

Neighbor

gene id symbol gene type direction distance location
CI01000000_03232984_03233709 NA coding upstream 31740 3232984 ~ 3233989 (+)
CI01000000_03220166_03232503 NA coding upstream 33226 3220166 ~ 3232503 (+)
CI01000000_03184726_03189468 FAF2 coding upstream 76261 3184680 ~ 3189468 (+)
CI01000000_03178021_03180730 NA coding upstream 84917 3178021 ~ 3180812 (+)
CI01000000_03163645_03170599 CLTB coding upstream 94718 3163157 ~ 3171011 (+)
CI01000000_03630643_03637287 LRRTM2 coding downstream 363186 3630591 ~ 3638076 (+)
CI01000000_03724666_03729920 MCHR2 coding downstream 456695 3724100 ~ 3730043 (+)
CI01000000_03864153_03869858 NA coding downstream 596748 3864137 ~ 3870246 (+)
CI01000000_03919871_03926839 NA coding downstream 650829 3918234 ~ 3926911 (+)
CI01000000_03930421_03932454 NA coding downstream 663016 3930421 ~ 3933213 (+)
G1690 NA non-coding upstream 22832 3242603 ~ 3242897 (+)
G1689 NA non-coding upstream 23881 3241638 ~ 3241848 (+)
G1683 NA non-coding upstream 52774 3211823 ~ 3212955 (+)
G1682 NA non-coding upstream 54293 3210830 ~ 3211436 (+)
G1515 NA non-coding upstream 116329 3124498 ~ 3149400 (+)
G2124 NA non-coding downstream 57900 3325305 ~ 3325615 (+)
G2151 NA non-coding downstream 105010 3372415 ~ 3372830 (+)
G2161 NA non-coding downstream 120547 3387952 ~ 3388224 (+)
G2167 NA non-coding downstream 128601 3396006 ~ 3396231 (+)
G2205 NA non-coding downstream 252301 3519706 ~ 3520058 (+)
G579 NA other upstream 1356921 1767917 ~ 1908808 (+)
G435 NA other upstream 1832875 1425121 ~ 1432854 (+)
G350 NA other upstream 2588792 671842 ~ 676937 (+)
G252 NA other upstream 2758657 503209 ~ 507072 (+)
G2774 NA other downstream 1186373 4453778 ~ 4454232 (+)
G2850 NA other downstream 1458581 4725986 ~ 4726482 (+)
G6811 NA other downstream 6937426 10204831 ~ 10321679 (+)
G6820 NA other downstream 7159818 10427223 ~ 10433018 (+)
G7018 NA other downstream 7711084 10978489 ~ 10980872 (+)

Expression


Co-expression Network