G87695 (LOC107669482,LOC107552775)


Basic Information

Item Value
gene id G87695
gene name LOC107669482,LOC107552775
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12344898 ~ 12347066 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129766
CTGTCTGAGCGAGGTGAGGTGAGGTTGTGTGGGTGCTGTGGGTTGAGTTGGGCTGCAGTGGCAGGAACATGTAGCTGTCATTGGGAAGAGAATGCGTGCGGCCCACTGAGGTCTTCTTCACGTACAGTAAGTGCTCGTCCGTTGGCTCGTCCGGCTGCTGGGGGTCTGGGGGATCTGCTGGAGATGTGGTCTGAGGGGCATTAAAAGAGATGCGAGTCAAGGTGAGAGCTGGTACTTGTGTTTGGAGCTTCAGGGGCCCTTATGAACACATGGACGCACACGCACAGACATTGTACCTAATACATAGAAGCTGGACTGGTTAGCATACAATGAAAGGCAAACATTACTGCGCACCAGACATAGGGAGGAGACTGATCAAGAAATCTCATAAATCATGTTGTGTAgatgtaaatgcatatttcttaTGTGAATGTGCACTTTTTTCGTATCTATGTATTGTATCAACAGATGGTTGAAAGCATGtgtatttcaataatttttagtaatttcttttaaattttttcattcagttgACCAAATTGAATGATTCATGAATCAGATTGAATAATACACACACTCCATTTGAAAATTTGGTAAGGTAATCTGTTAAACAAGTCtcaagaacaaaaaatacagatttttggTGTTTGTGTATCCAGAATTTCTCAATTTCATGGAAACCTTTAAGATAATTTTAATAGCAATGtattgtatactgtatatgcatttttagtAATTGAATCAGACTTAATCATACAGTTTAGTTTGTAAATTGTGGTGTTCAATGAGTATCAAGAACCAAATTTTTTGAAGTAACACTCTTAagaatttctcattttcatagaaaaaaaatgtaaggtttggaatgacgtgagATTAGTAAACAATAGTAATTACAGCAATTTCtccattatattttttgattgttatttgtgattaaatatgtttttagtaCATTTGTTTCCTTTACACTGCAGTTTATTATCATTCCTTTTGggtaacatatacatatatatatatatatatccatttcGATTTACATTGCTATTTCTAACCTGCTTTATGGACATTATGCACAGTTATGCACATCTCAGTGCacatttttctcccttttttcatctacataaataaaattgaaaaatgagaACAGGCTGGATGTAGATCTCACTTTTCTGAGAAATGctatgtataaattatttatggATCTATGGGCATAGTTCTGAGACAATGAATATGAATTCAATTGTGAGGTGACAGAAAGCATCAGCCTCCTCCCTTCAGAAGCTGCGCCCAGAGCCTGCACTACTGTAGCTGGCAGACAGCAGAAGCCGACCCCATACCACACTCCTATATTCTTTCAAGAAGCATGGTACTAGGGAGAAACTTCACTTTTAATACACAAAAGATAAGACAGAGATAAaatcatgaaacaaaaacaaagagacacaggtAGATATGCAGACAAATAGATCGAGGATGCAAACAGGAACATCTAAAAAGTATGAAGAGACTAGATGGAGAAGAGGTTCAGAAATGGCCTTTAGACGTGTGAGAGGAAGAACATAGCTGCAGAACCCAGACAGGAAAGGAGCAGATTGACAGGCAGTAATACTAATctactggactggactggaccaTACAAACACTAGGCTGGTGCGAAATGtacagagagagggaaagagagaaggagaaagagaggagcGGACGGTTAGAAAGACCCCAAAGCTTCCAAATGCACTCGCCTCTCAGCTCTGCATAAAGCGATTATGATGAAGATGCTCTACTTTAACAAATTCATCAGACTAACAAATGTCAGAAAACAGATTACTGGcatagttttaatataaataattcatacagCCCTGGCACGGCAGGTATTTAATTAGGTTAGACGTGTAGAGAGGAAGCACCAGTGTTAGGGAAGTTTGCAAACTAGTTTGTTAATGTAAGCTACCTATATGTTATAAAGTAGCTAAAATACAGTCAGGCTCGCTCTTTTTAAGTACTAGTAGTTTGTTAAACTACAAGCTACTGCAAGAAAGTACTGAccattaaacaaaatg

Function

NR:

description
PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1G-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129766 True 2063 lncRNA 0.38 2 12344898 12347066

Neighbor

gene id symbol gene type direction distance location
dhx8 dhx8,LOC107706906 coding downstream 232123 12103878 ~ 12112775 (-)
psme3 psme3,LOC107669474,LOC107582747,LOC107706898,LOC107727296,LOC107666924 coding downstream 408442 11932423 ~ 11936456 (-)
chmp2a bc2,chmp2a,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 521630 11820541 ~ 11823268 (-)
zeb1b zeb1b,LOC107706887,LOC107669492,LOC107552760,LOC107666916,LOC107582755,LOC107727309 coding downstream 602937 11685789 ~ 11741961 (-)
hexdc LOC107669475,LOC107706886,LOC107552734,LOC107727297,LOC107582853,LOC107666907 coding downstream 711015 11630324 ~ 11633883 (-)
uts2r2 ogfod3,zgc:195081,LOC107743776,LOC107691211,LOC106959269 coding upstream 100970 12448036 ~ 12472207 (-)
psmd11b psmd11,psmd11b,LOC108426450,LOC107743775,LOC107568948,LOC107691212 coding upstream 125823 12472889 ~ 12480834 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773,LOC107677861,LOC107675020 coding upstream 141703 12488769 ~ 12548929 (-)
LOC122355678 LOC107675002,LOC107754109,LOC107566636 coding upstream 202590 12549656 ~ 12552715 (-)
pdk2a LOC107754097,LOC107565668,LOC107568951,LOC107677886,LOC107743772,LOC103046317,LOC108426453 coding upstream 209616 12556682 ~ 12564039 (-)
G87660 NA non-coding downstream 192161 12152240 ~ 12152737 (-)
G87659 NA non-coding downstream 193263 12151299 ~ 12151635 (-)
G87610 NA non-coding downstream 374074 11970529 ~ 11970824 (-)
G87607 NA non-coding downstream 397164 11946907 ~ 11947734 (-)
G87605 NA non-coding downstream 399267 11944072 ~ 11945631 (-)
G87746 NA non-coding upstream 91684 12438750 ~ 12487395 (-)
LOC122355629 NA non-coding upstream 266084 12613150 ~ 12638736 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding upstream 457630 12804696 ~ 12807646 (-)
G88003 NA non-coding upstream 1018887 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 1086828 13433894 ~ 13434125 (-)
G87608 NA other downstream 393743 11948540 ~ 11951155 (-)
G87569 NA other downstream 509286 11832879 ~ 11835612 (-)
G87489 NA other downstream 1022295 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 1299009 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 1337944 11005006 ~ 11006954 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 302317 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 404838 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 1077242 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 1176602 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 1262354 13609420 ~ 13691340 (-)

Expression


Co-expression Network