G87718


Basic Information

Item Value
gene id G87718
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12476805 ~ 12477909 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129812
CTGTCGCCCCGCGTATCGCAGAGCCAGTTTGCCACTGATCAAGAGCCGCCTGGAGTTTTGGGGGACAGTAGATGGCATTGGCGGTGGTCCTGGCTGAGGTGAGGGCAGCCCTGGCTTTGGGAAGGTTGCTGAGAGCGTGGTAGGTTTTACTCTCCAGCAGCTGAACCTCCACCAGCAGAGCTTTATCATCCATCTTCTTCAGCTCCTGAAGCAACTGGGAACC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129812 True 223 lncRNA 0.57 2 12476805 12477909

Neighbor

gene id symbol gene type direction distance location
LOC122355615 LOC107754112,LOC107689267,LOC107743783,LOC107566616,LOC107691214,LOC107568947 coding upstream 18950 12451994 ~ 12457855 (+)
LOC122355068 uts2r,LOC107552777,LOC107754100,LOC107689263,LOC107577513,LOC107743796,LOC107691210 coding upstream 73944 12372428 ~ 12402861 (+)
cacna1g cacna1g,LOC107754113,LOC107552774 coding upstream 124321 12165589 ~ 12352484 (+)
spata20 spata20 coding upstream 328938 12113257 ~ 12147867 (+)
etv4 etv4,LOC107552771,LOC107706904 coding upstream 374102 12080097 ~ 12102703 (+)
cdk5r1b cdk5r1b,cdk5r1,LOC107568950,LOC107565647,LOC107754098,LOC107675021,LOC107691215,LOC108426451 coding downstream 4143 12482052 ~ 12487183 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding downstream 89172 12567081 ~ 12607101 (+)
tbx21 tbx21,LOC107565723,LOC107563776,LOC107677868 coding downstream 160230 12638139 ~ 12653725 (+)
pnpo pnpo,LOC107743793,LOC107754092,LOC107563779,LOC107677888,LOC107565739 coding downstream 190313 12668222 ~ 12671939 (+)
cdk5rap3 cdk5rap3,LOC107754106 coding downstream 199791 12677700 ~ 12683617 (+)
G87669 NA non-coding upstream 236604 12239783 ~ 12240201 (+)
G87665 NA non-coding upstream 318297 12158246 ~ 12158508 (+)
G87664 NA non-coding upstream 318990 12157586 ~ 12157815 (+)
LOC122355133 NA non-coding upstream 319883 12151152 ~ 12156922 (+)
G87644 NA non-coding upstream 327168 12149423 ~ 12149637 (+)
G87753 NA non-coding downstream 78773 12556682 ~ 12558732 (+)
G87891 NA non-coding downstream 422163 12900072 ~ 12900399 (+)
G87934 NA non-coding downstream 718075 13195984 ~ 13197074 (+)
G87979 LOC107755539,LOC107566694,LOC107702418,LOC107708141,LOC107689963 non-coding downstream 871040 13348949 ~ 13383848 (+)
G87981 NA non-coding downstream 882405 13360314 ~ 13361050 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 531170 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 592708 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 775150 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1894260 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1977107 10497425 ~ 10499698 (+)
G87817 NA other downstream 254855 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 282465 12760374 ~ 12762731 (+)
G88016 NA other downstream 964034 13441943 ~ 13444915 (+)
G88082 NA other downstream 1117885 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 1377786 13855695 ~ 13864743 (+)

Expression


Co-expression Network