gall (si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807)


Basic Information

Item Value
gene id gall
gene name si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12760374 ~ 12762731 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU129966
GACAGACTGTCCctcattcagacacacacacctgcagcaaACCTGTTGTTTGAAGGTTACAGACTCTCTTTTTTCTGGAATCCTgggtttttataaatatttataaacagcAACTGTTCTCTTATAAGATGCAGATGAGTTGTTCTTTACTCTTCATCTCACTCTGTGTCCTCACTGCACATCTGTCAAGGATCCAGGGCATGACCCTCACGAATCCAGAGAAAAAGGGATGGACTTTGAACAGTGCTGGATATCTACTGGGACCTTATGCTCACAGAAGTCTTAATGTAAGACACAGAGCTATGGGCAAAAGAGACATGTGGAATGAAAGTTCAAGCTTACCAGCATCTTCATACAATGATTCCTATCTTCTTTCACTGCTGGGGCATCTTGCATATCTGCGATTAAAAGAAATGGGAATGACTGAAGATTTCAGTGGCTCTTTAATGAGTGGCCATATGAAGCAATAACAAAATATctctgttttactgttttttaacaGTTGCCCTCTAATAGCGTTTTGCATTTGAtccttttattcattatttaaaatgtattaacatgtaGTTCACATTGGTACAATGCGTAGATTGATATCCCATGAATCATGCTGGTTTGCCTCATCTCTCCACTTTATTATTCAACAATTGTTGGTGCATAATTTTCTGCTTCAGAGTTCAAATAAAGCACTTcatgacaaatgtttaaaaaaaaaaaacgtttattcaatataaaaagGAAATTGAGGTAATCAGGGTGTAGCAATTTGTGAAAAATTGGTGATTTCACCATTGCCATTTACaagtacacatttaaataaatatgaaaataataacctGTGGACtccaaaagcatttttgcatgACTAACAGAGTAacagaataatttaaaaaatgtaacccaAAGCGGTGGGAGTGCATGTGCATAGTAgtgtaacaaaataaatttcttCTTGATTACTAGTCTACTGCATCCAGAGCGCTCAAGATGTTTTACGACATCCTTCCATCTGATGTCAAATATGCAATACTATCAAAGATTGTCTTTCATATTATATAAGGAGGAGCAAAGATTTAACATATGGC
>XM_043254343.1
agacacacacacctgcagcaaACCTGTTGTTTGAAGGTTACAGACTCTCTTTTTTCTGGAATCCTgggtttttataaatatttataaacagcAACTGTTCTCTTATAAGATGCAGATGAGTTGTTCTTTACTCTTCATCTCACTCTGTGTCCTCACTGCACATCTGTCAAGGATCCAGGGCATGACCCTCACGAATCCAGAGAAAAAGGGATGGACTTTGAACAGTGCTGGATATCTACTGGGACCTTATGCTCACAGAAGTCTTAATGTAAGACACAGAGCTATGGGCAAAAGAGACATGTGGAATGAAAGTTCAAGCTTACCAGCATCTTCATACAATGATTCCTATCTTCTTTCACTGCTGGGGCATCTTGCATATCTGCGATTAAAAGAAATGGGAATGACTGAAGATTTCAGTGGCTCTTTAATGAGTGGCCATATGAAGCAATAACAAAATATctctgttttactgttttttaacaGTTGCCCTCTAATAGCGTTTTGCATTTGAtccttttattcattatttaaaatgtattaacatgtaGTTCACATTGGTACAATGCGTAGATTGATATCCCATGAATCATGCTGGTTTGCCTCATCTCTCCACTTTATTATTCAACAATTGTTGGTGCATAATTTTCTGCTTCAGAGTTCAAATAAAGCACTTcatgacaaatgtttaaaaaaaaaaaacgtttattcaatataaaaagGAAATTGAGGTAATCAGGGTGTAGCAATTTGTGAAAAATTGGTGATTTCACCATTGCCATTTACaagtacacatttaaataaatatgaaaataataacctGTGGACtccaaaagcatttttgcatgACTAACAGAGTAacagaataatttaaaaaatgtaacccaAAGCGGTGGGAGTGCATGTGCATAGTAgtgtaacaaaataaatttcttCTTGATTACTAGTCTACTGCATCCAGAGCGCTCAAGATGTTTTACGACATCCTTCCATCTGATGTCAAATATGCAATACTATCAAAGATTGTCTTTCATATTATATAAGGAGGAGCAAAGATTTAACATATGGCGCCATCTAATGGCAAGTGGAAGAAAAGCCATCTTTGTAAAAGGATGCTCTGTTAATTAATTCgacttgtttagttttttacaaaaGACGCGGACATAAGTAAAaggtttgtaataaatataaatgagcaaatatgaaatataaattaaataatttagtctAAATCcaataatgcaaattaaaaccaaatagTCAAGATAACCCGATGAAACTAAATGAGTACATCAATACTTGTTCAATACAATTGGATACATGTTTTGTGCCCCACAATGCTCTCAAGTAATACACACataacaaatccatcatttttCCTCTATAGGGATCAACAGCAATATCTACAGGGATCAATAATgaaaattggatttttttttgtctgtgcgTTTTTTCAGTTTCACTATCAGTGTTGAggaatgtttcttttaaaaataatgtattgcaATATTGCGTTACTCCATAAAA

Function

NR:

description
galanin peptides-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129966 False 1085 TUCP 0.36 6 12760374 12762273
XM_043254343.1 True 1524 mRNA 0.34 6 12760393 12762731

Neighbor

gene id symbol gene type direction distance location
gjz1 si:rp71-1c10.10,LOC107675010,LOC107563802,LOC107754116,LOC107677869,LOC107743778 coding upstream 8642 12750626 ~ 12751732 (+)
znf668 znf668,LOC107675019,LOC107754087,LOC107743759,LOC107563787,LOC108426467 coding upstream 10368 12746551 ~ 12750006 (+)
rnf40 LOC107754088,LOC107675023,LOC107743762,LOC107565773,LOC107677883,LOC107563784 coding upstream 29446 12717290 ~ 12730928 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding upstream 45702 12709411 ~ 12714672 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927,LOC107754105,LOC107743763,LOC107563780,LOC107677875 coding upstream 63135 12691518 ~ 12697239 (+)
valopb valopb,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788,LOC108426422 coding downstream 3394 12766125 ~ 12773695 (+)
gabrz gabrz,LOC107675029,LOC107677887,LOC107743757,LOC107754081,LOC107565977,LOC107563789,LOC108426470 coding downstream 28558 12791289 ~ 12812984 (+)
adgra1a adgra1a,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791,LOC108426471 coding downstream 52460 12815191 ~ 12841965 (+)
mxtx2 mxtx2,LOC107566646,LOC107675004,LOC107754102,LOC107722443,LOC107563796 coding downstream 95517 12858248 ~ 12859528 (+)
bms1 bms1,LOC107675025,LOC107689949,LOC107566656 coding downstream 97403 12860134 ~ 12877268 (+)
G87753 NA non-coding upstream 201642 12556682 ~ 12558732 (+)
G87718 NA non-coding upstream 282465 12476805 ~ 12477909 (+)
G87669 NA non-coding upstream 520173 12239783 ~ 12240201 (+)
G87665 NA non-coding upstream 601866 12158246 ~ 12158508 (+)
G87664 NA non-coding upstream 602559 12157586 ~ 12157815 (+)
G87891 NA non-coding downstream 137341 12900072 ~ 12900399 (+)
G87934 NA non-coding downstream 433253 13195984 ~ 13197074 (+)
G87979 LOC107755539,LOC107566694,LOC107702418,LOC107708141,LOC107689963 non-coding downstream 586218 13348949 ~ 13383848 (+)
G87981 NA non-coding downstream 597583 13360314 ~ 13361050 (+)
G88010 NA non-coding downstream 666682 13429413 ~ 13431559 (+)
G87817 NA other upstream 22725 12732764 ~ 12737649 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 814739 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 876277 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 1058719 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 2177829 10523143 ~ 10582545 (+)
G88016 NA other downstream 679212 13441943 ~ 13444915 (+)
G88082 NA other downstream 833063 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 1092964 13855695 ~ 13864743 (+)
LOC122355339 LOC107702424 other downstream 1131630 13894361 ~ 13904627 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other downstream 1215440 13978171 ~ 13993044 (+)

Expression


Co-expression Network