G87860 (gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977)


Basic Information

Item Value
gene id G87860
gene name gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12804696 ~ 12807646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU130017
AGTCTCATAAACGGCTTCAGATTCAGAGGTGTAGTGATCCTCAAGGGTGTACTGAGCCAGCTGTAAATGATCAAGACCGCTAACTGACTGGTTTCCCCGTGTCCAATAAAAAACCACATCTTTCACATTATATCCAGCTTTCAAGTTGAAGGGTgcatgtctgtctgtccatgGGATATTTGGTTAGATCCATACTGCAGGCCACTGTTGTAGTAATTctagagaaacagagaaaacagagaaaaaaagagcggCATACATGAGAGAATGTTGTTGCTTATATAACACTGGAAATCAGCTCACTGTCTGTGGATGCTACTTTCAAGCTTAATTTTTGATGCCAGCTGCCCATCTGTACACAAGCTTCGGGTCCCTTGCCACCGCTTCTATTCTTACCCTGTTTTCTGCCATTGTGAACTCTTCCAGTGGCCCGTAACTATGCCTGCCTCTTTCTAGTTGTCCCCTTAAGCCCTAATCCCTCCATCAACCCTCCAGTCAGTCCTTCAACAGCGAACCCTTTTCTCAACCATTTCCTTTCATAAGGCCCAAGCAGCGTCTGACTGTGGAGCAGATCGGGTGAATGACACCTCACTACCTCAGGGCATACAGCACAGTTCCGTTGGGGAATATCCGGATCAGTCTGTTTTCGACAGTGATGTCGTGCAGGAAGGATTTCTTGGAATCCACAATGAACGTGTCAGGGACCCAGAGGAGCTCTACCAGTCTCCCATCCAGACTCAAGCTCTTATTGCCATCAAAACACAAACGTTCGTCTGTCCAGCGCTGACGAAGAAAGATGGTGGCCGTGTAATC

Function

symbol description
gabrz Predicted to enable neurotransmitter receptor activity. Predicted to contribute to GABA-A receptor activity and chloride channel activity. Predicted to be involved in several processes, including chemical synaptic transmission; chloride transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within chloride transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of GABA-A receptor complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in cerebellum; diencephalon; eye; and telencephalon. Orthologous to human GABRP (gamma-aminobutyric acid type A receptor subunit pi).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit pi-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130017 True 813 lncRNA 0.47 2 12804696 12807646

Neighbor

gene id symbol gene type direction distance location
cd37 NA coding downstream 45775 12752719 ~ 12758921 (-)
znf646 znf646,LOC107754085,LOC107675018,LOC107743758,LOC107677879,LOC107563786,LOC107565918 coding downstream 58053 12737819 ~ 12746643 (-)
ccdc189 LOC107566122,LOC107754089,LOC107675027,LOC107743779,LOC107563782,LOC107677867 coding downstream 87512 12714251 ~ 12717184 (-)
cbx1b cbx1b,cbx1,LOC107677876,LOC107743766,LOC107566057,LOC107563783 coding downstream 96522 12701248 ~ 12708174 (-)
si:ch211-194k22.8 si:ch211-194k22.8,LOC107565757,LOC107754091,LOC107743792,LOC107675005 coding downstream 115448 12685112 ~ 12689248 (-)
si:ch211-214e3.5 LOC107754079,LOC107565766,LOC107675030,LOC107722448,LOC107689947,LOC107563792 coding upstream 38868 12846514 ~ 12855295 (-)
sh2d4bb LOC107754115,LOC107565991,LOC107675008,LOC107689965,LOC108273974,LOC107722446 coding upstream 71954 12879600 ~ 12886164 (-)
nrg3b nrg3b,LOC107678479,LOC107566665,LOC107689960,LOC107563798,LOC107754077 coding upstream 93289 12900935 ~ 13019703 (-)
atrnl1b atrnl1b,atrnl1,LOC107755548,LOC107689951,LOC107708169,LOC107702414 coding upstream 306164 13113810 ~ 13197085 (-)
trub1 trub1,LOC107755443,LOC107689966,LOC107702428,LOC107708440 coding upstream 392118 13199764 ~ 13202870 (-)
LOC122355629 NA non-coding downstream 165960 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 317301 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 457630 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 651959 12152240 ~ 12152737 (-)
G87659 NA non-coding downstream 653061 12151299 ~ 12151635 (-)
G88003 NA non-coding upstream 558307 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 626248 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 650810 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 652499 13460145 ~ 13461245 (-)
LOC122355666 NA non-coding upstream 901409 13709055 ~ 13712541 (-)
G87845 LOC107675011 other downstream 52018 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 129224 12649383 ~ 12675472 (-)
G87608 NA other downstream 853541 11948540 ~ 11951155 (-)
G87569 NA other downstream 969084 11832879 ~ 11835612 (-)
G87489 NA other downstream 1482093 11321423 ~ 11322603 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 616662 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 716022 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 801774 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 1165236 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 1340401 14148047 ~ 14150005 (-)

Expression


Co-expression Network