G88003


Basic Information

Item Value
gene id G88003
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13365953 ~ 13368320 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU130240
TAGCTATGgcggcaaaaaatacatttattagggAGAAGAAAACAACCCTGCTACTTTATTTGCATGGAATATGAATTTCTGATGTggaatttttacattaaataatattaaaatacagaaaagtaattaaaacaaaaaataaaacatcttaaagaaataaaaaaaaatgtaaaatattgtaaaaccatttttatagaaaatagaTTAAAGGTTTAAAACAAACGAAAACAGCGCccaattataatattttcattttaatccccttttaacttaatatatatatatatatatatatatatatatatacagtaaactCAGAAGTTTAAAAACACTGGACCATTGTACAATATATCTACAAATTTATAATCACAGTTTCACTCACTATACAATCAAGCAGAGCACAAATTACAGACCAGAAACAGAATCgacgcatttttttttcctcatcagtTTCAATTCACcattcacaaacaaacatacatacatacttcaaaagatcttttttgtattttgagacattaaataaatgatgaatgtAAAGCACACTGATAAATTACCGACAGATTATAGAGTCTTCATTTTGCTATTAAGGGCTCTGtgtaaatgcttatttttcGGCTAGCATTGCATAATTTCCTTCATCCAGCGTTTTCCGGAATGTCTGCAATGTGTTTGGGATTTTGGAGTGCTGAGAGCTACAGCACATGCTCTCAGTGTTAAAACAACTGATATGACCTTGACAAGCTTATATTGCAGTATGGCAAGTTATTATGAACCCTTTATCACAGtgtatgggcatgattttactttcAATAGCGGCTCAAGCGTGAGAAAACCCAGAAGACTGAGAATGGCACTGAAATGGTTGGTAAACCGACTGATATCTGCCAGTTATCTACTCTAAAGGTGAAAAAATCAGCAGCAGCATCCGACGGGGCGATCCTTCATCATACTCCCCTGCAAGAAGGGACGGAAGGAGAAGCAAACTAGTGATGCCTCTGGCATTCGCAATTCATCGGTTGGAATGGATTCAACTCTGCACGATGTTGTGTACCATATGTTACATCACCACGGAATTGGACAGGGGATATTTTGCTGGAGTCTCAGATGGGACGCTGGCTGGGGCGACTACGGCTcagtcaaacaaacaaagagggGGGTTAAAATTGCACTTTTGCcctttaatatttacaatatctCCTTCATTTCGCAGGGATTTTACACTCTACGTCTTTATAGGGGAGCAACAAACTCTTCAAAAGCAGCACAGGAGCGTCATATGCacgaaaaacaaataataatacaaaataaaaaaaagatggaacaagaaaataaaaataattgtaaggTTGTTTCTACAGGAAACATATAACCAGAGGTAGAAGGGGGGAAAAGCAgaagtataataatatttaattacaactTAATCCAGATAGAATGAACCGCAAGCTCCCTTAAGACTAGCCCAACATGTATCAAAATTTCTGAGATGTAGTTATTCATTCTGATTAATGTGTTTTAACTTCATAATGAGACAAAGCAAGAGCTGTGTTTTTTGGCATGGCCCTTCTCGCCCTAAGTGCTTTGCGAGAGATAATGCTATCCGGGTGTAGCAGTAACCTAGCAGCAGCTCGAACGGGGAATGTTGCCCACACTCCTGTGTCAGAGCGTGTGGGATTAGACGCGAGGGTCCTTCTCATTACATAATACATTCATTAATTGGCACGTTTGCATGAGAGCGGTGAAGAGCGGCCATTAACCTGCGGTGCAATGAATAGAGGAAAGAGTCTCTAAAGAGCTGCAGAATCTCCATTAGTCCAGCACATTTTGTTCTTCGTAAGAGCGTGGGGTCACATTTATGAGAATAGTCATTCATCTACCAACTTCATACACCACGCTGCTGGATTTGGACTACAGTTCTGCTCTGAACCCGATGAACTGAGTCATCAAGGCACGGATGAGGAGGCTACATCGCAGGGGACGGCGAAGAGAGGACAGTTGGGCACGACGTGAAAAAAGTAATCTCTTTGCTTTCCAGTCATCTGTCACACAGGTATCCTTAGCGCAGTTCAGTCCTTGTTTTGAACTGTGACTCCAGTGTATAAAACAGACTTAAGTTGTCTCATGAAAAGAGCGCTGTTTGGATCCCAAATGGAGTAAATCGTTTCGTAACGGGCTCTGTCGTACAGCGCGTGCTATTGTAACATCCTTCCCCTCGACTGACTTCACTTCCTTCCGGCTGCGTCGTCCGGCACTCTTTGCTGTTTGATTAGTCGTTCGATCTCCGAACCCAGCGTTTGGAGATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130240 True 2307 lncRNA 0.39 2 13365953 13368320

Neighbor

gene id symbol gene type direction distance location
tdrd1 LOC107702448,LOC107755540,LOC107566104,LOC107581549,LOC107708149,LOC107689961 coding downstream 31161 13325153 ~ 13334792 (-)
vwa2 vwa2,LOC107755546,LOC107702446,LOC107707947 coding downstream 41258 13307621 ~ 13324695 (-)
LOC122355472 NA coding downstream 69699 13293736 ~ 13296254 (-)
trub1 trub1,LOC107755443,LOC107689966,LOC107702428,LOC107708440 coding downstream 163083 13199764 ~ 13202870 (-)
atrnl1b atrnl1b,atrnl1,LOC107755548,LOC107689951,LOC107708169,LOC107702414 coding downstream 168868 13113810 ~ 13197085 (-)
adrb1 adrb1,LOC107755541,LOC107566002,LOC107702449,LOC107689959,LOC107581665 coding upstream 4169 13372489 ~ 13375488 (-)
nhlrc2 nhlrc2,LOC107755539,LOC107708141,LOC107702418,LOC107684116 coding upstream 13324 13381644 ~ 13398387 (-)
plekhs1.1 LOC107566815,LOC107755416,LOC107702419 coding upstream 37473 13405793 ~ 13410281 (-)
LOC122355682 NA coding upstream 45861 13414181 ~ 13418256 (-)
LOC122355076 LOC107566710,LOC107684141,LOC107581554 coding upstream 50397 13418717 ~ 13422958 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding downstream 558307 12804696 ~ 12807646 (-)
LOC122355629 NA non-coding downstream 727217 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 878558 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 1018887 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 1213216 12152240 ~ 12152737 (-)
G88019 NA non-coding upstream 65574 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 90136 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 91825 13460145 ~ 13461245 (-)
LOC122355666 NA non-coding upstream 340735 13709055 ~ 13712541 (-)
G88146 NA non-coding upstream 456280 13824600 ~ 13894358 (-)
G87845 LOC107675011 other downstream 613275 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 690481 12649383 ~ 12675472 (-)
G87608 NA other downstream 1414798 11948540 ~ 11951155 (-)
G87569 NA other downstream 1530341 11832879 ~ 11835612 (-)
G87489 NA other downstream 2043350 11321423 ~ 11322603 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 55988 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 155348 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 241100 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 604562 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 779727 14148047 ~ 14150005 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G240884 NA non-coding CI01000055 null 3563813 ~ 3565842 (-)