LOC122355666


Basic Information

Item Value
gene id LOC122355666
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13709055 ~ 13712541 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU130373
GGGAAGAGGAGGTCAGAGGTTCAGCCGTCAAAGAGGTTCACGAGTGATGGATGGCAGTCTGAGCTGCGCACAGCACATCTACTGTAGCCTTAACCGCCGAAAAGGCCTGCacacaacacaaataaataaataaacacgcaCATCAAAGgaattttcaaaaagaaaaacaaagccaGAGCACGTTCGCAAactcacacttaca
>XR_006252233.1
CCTATCATGAACTTTGTTCTCATAActttcaactttatttattttatgttctttttttaaattacattaaaaacttaACATTGTAGATTATACTAGTAATGTTTTAAGAACCAGGGAAAATTCTGCTAATATATTTTGACTGTTTATTATCCTAATTCTGCCTTTGTTCTCGAAATATTACTACTTTAAGCCATAAAGTTgaggttttatttgatttgttattttatcCATCCAGAGTATGAAATGTACGTTCTGGTGCTTGTTCTCTTTTTTAGCCCCCATCCAAAAGCTTCCAAAAGCCACCCACTTATGAAACTACATTCAAGGCTGTCTTGGTGACCTGAGTGATTGTTGTTTTATTCCTGTGTGCTTTTAGGTGAGTGTTTTATGCTCAATCGCCCTCTCTAACACAAACCCAGAATTTACTGGCACCTCTCACAGGCATGACTGACAGAACACAGCCAATACTCACAGTTGGCAGCAACTCTCCAAAAGAACCATGCTGCTCTGGCTTACGTTTTATTTATAGCAGATACCTGGTAATGAATACCTAGCCGCCGCCAATCGCTTGTGTTATCTGCTGAATGTGTGCAACGTCGTCTTGTAATTTTCCaaacaaagttttgtttttgtattcatttgctTTTCTGTTGAGAGGTCCGGTCTCCACGTGGCCAATAGAGAGCAAGGAAGCCCCGGCAGGCAGGAAGCTACACCTCCCGTCGTACCGAATGAGTTGCAGCATTCAGTCTTCAGCCTATGCAACGGTAAACCGAAGAGATGATCAAATTTGAGTTGAGGACGCGCGTGCAGTTTAAAGAGAACGTTTTTACACAGGTACATGCAAATCCTGATGAGATCGGTCCGGGCACGACGTGACTTTAAAAGTGCTCCTGTAGCAGCAAAAGGAGGATGCTGGGAAGAGGAGGTCAGAGGTTCAGCCGTCAAAGAGGTTCACGAGTGATGGATGGCAGTCTGAGCTGCGCACAGCACATCTACTGTAGCCTTAACCGCCGAAAAGGCCTGCacacaacacaaataaataaataaacacgcaCATCAAAGgaattttcaaaaagaaaaacaaagccaGAGCACGTTCGCAAactcacacttacacacacacacacacacacacacacacgtacacacccgtgccagaaataaaaaaagaaagcaagcagTCAAAGGCCTGAAAATGCACACATAGTTAACTGTCTGATAACGGCAGGCTTGAGgaaaatgagacaaaacaaaacaatggcGAGAAGCATATGTGTAATTGTGCATTCGGTTTGAAAATATTGGGATAAGATTTTGCTGAAACTGATTGATGCCATTCTCTCTTGGAAGATAGTGGGCCTTGTTTCCTCGTACACAATATTGCTTGTGTCGTGACCTGGGATGCAAAGAACGAAACGGCTGAAATGCATTTCACCATGTAAAAGTACTTTCTTGAAATGAGCAAACTGTAATTTAATCCAAATTATCCATATGACTCCAgcccatcaattaatgtctagAGAAGCGAAGAGCTGCGTGTTTGCAAGAATCGAATCCATCGTTGAGGCTTTTTAACTTCaaccattgcttctggccaaaatataaGTCCTTAATCCATACtaacgcttcctccagtgaaaagtcccctgttttctttcacatcaaaatccagaCATATTTGAAATGAACTTATGGCTCTTGATCTGTTCATATTTCACTCCTGATTTAGATGAGAAGACTTTTTTTCACTGAAGACCCtgtattttagccagaagcgaTGGTTTTAAGTTCTAAATTCCTTGATGGGGttattacacacatacagcttTTTTCTTTACAAGATGTTAAGtggagtcgtgtggattatTTATGGATtactattatgttttttatcaCCTGCAGATGATCCATTAGTGAGCTGTGATGTAATGCTCATTTACTCCGAATCTGTTTCGAAACGGAAAACAAACGCATCTCCATCTTAGTTGACCCGAAGTTGAGTACGTTTCCAGCTAATTttcattgatttcatttaattaactaTGCTTTCTGCTTCAGagtaaaatagaaacaaaaagtaaagtttaagataaaaaaatataaagattttttatttctcatcttAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130373 False 202 lncRNA 0.46 1 13710066 13710267
XR_006252233.1 True 2130 lncRNA 0.39 3 13709055 13712541

Neighbor

gene id symbol gene type direction distance location
crygmxl2 crygmxl2,LOC107566855,LOC107708427,LOC107702435,LOC107581669,LOC107684145 coding downstream 151965 13555693 ~ 13557090 (-)
crygmx crygmx,LOC107755411,LOC107566847,LOC107684144,LOC107581668 coding downstream 154030 13553556 ~ 13555025 (-)
casp7 casp7,LOC107707870,LOC107684033,LOC107581558,LOC107566160 coding downstream 264323 13436907 ~ 13444732 (-)
LOC122355076 LOC107566710,LOC107684141,LOC107581554 coding downstream 286097 13418717 ~ 13422958 (-)
LOC122355682 NA coding downstream 290799 13414181 ~ 13418256 (-)
vti1a vti1a,LOC107702459,LOC106589328,LOC107566351 coding upstream 7130 13719671 ~ 13839456 (-)
acsl5 acsl5,LOC107702457,LOC107566323,LOC107722228,LOC107755526,LOC107581566,LOC107684041 coding upstream 133632 13846173 ~ 13854773 (-)
tectb tectb,LOC107755437,LOC107702437,LOC107566341,LOC107581573,LOC107684045,LOC107722201 coding upstream 152285 13864826 ~ 13872555 (-)
nat9 LOC107702469,LOC107566461,LOC107581577,LOC107722187 coding upstream 288137 14000678 ~ 14003093 (-)
grin2cb grin2c,LOC107755516,LOC107702470,LOC107722186,LOC107684146,LOC107581635 coding upstream 331030 14043571 ~ 14081743 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding downstream 247810 13460145 ~ 13461245 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding downstream 249190 13458456 ~ 13459865 (-)
G88019 NA non-coding downstream 274930 13433894 ~ 13434125 (-)
G88003 NA non-coding downstream 340735 13365953 ~ 13368320 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding downstream 901409 12804696 ~ 12807646 (-)
G88146 NA non-coding upstream 112059 13824600 ~ 13894358 (-)
G88205 NA non-coding upstream 281119 13993660 ~ 13994186 (-)
G88206 NA non-coding upstream 281831 13994372 ~ 13995952 (-)
G88233 NA non-coding upstream 419378 14131919 ~ 14133138 (-)
G88355 NA non-coding upstream 685819 14398360 ~ 14398928 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other downstream 17715 13609420 ~ 13691340 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other downstream 168754 13523668 ~ 13540301 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other downstream 276860 13424308 ~ 13432195 (-)
G87845 LOC107675011 other downstream 956377 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 1033583 12649383 ~ 12675472 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 260341 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 435506 14148047 ~ 14150005 (-)
G88365 NA other upstream 829025 14541566 ~ 14643780 (-)
LOC122355209 NA other upstream 990027 14702568 ~ 14706251 (-)
ndufaf8 NA other upstream 1581292 15293833 ~ 15295240 (-)

Expression


Co-expression Network