G88207 (LOC107702472,LOC107581578,LOC107566485,LOC107722231,LOC108443562,LOC103039554,LOC107684050)


Basic Information

Item Value
gene id G88207
gene name LOC107702472,LOC107581578,LOC107566485,LOC107722231,LOC108443562,LOC103039554,LOC107684050
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 14028426 ~ 14090868 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU130514
tttttttttttttttttttTTTCTGATTTCATCGTTGAGCTTTATTTAAAACCTGATATGATAGCATGTTAGAAATTTCTGTTTGCTTGCAGtgtaaatctgaaatattagcgttgtttttaaatgtggcAAATGAAGCCACATTTTAATCTTGCACGTCTTTGGTGTGTTTCCCATATAAACGTATTGTTCAATAACAATATTGGTCACAGATCAAGTGTATCACAATAATTAAGAATTCTAACAATGTAgtatcaaacaaaacaaattatatacacaatacaaagaGCTGCGTGTCTCAACCTTGACTCTCTAAGCCCCTGAAAAGtgtctgaataaaagtattaaaggAAATTAAGCTGGTATTACTTATCAGTAAGGTCCCTTGTGAAAGTGATCACAAAACAGGAAAGCTGTTTGTTTCTCCTGCTGGCTTGGTCCAAGTTCAGTAGCAAAAAGAGTCCTCCACAGGAAAATGCAGTACCATCAATACATTTACAAGACAAAAGAActtgtacatatatttaaacaatgcaGAGCATTATAAAGGCTTGGCAACACTTAGAAACAGATGCCCTCTTGTACATCTGTCCAGCAATCACAATTGGATATGGCCATGTGTTTTAAACAAACCCAACATGAGGAACAAGTTTGGTCAAACACTTAATATATCGAAGACCTCACAGGCCACAGTTCTCTAACTTGTCCTTATTTATTCTAAGACTGTGGTGGTTTTGAACACTAGCTCCTTGTTTAAATTGCATTGTGTACTGCATTCATCTATGAAATCTTGCAGCTCGTCCGTGCGCAGTTCTGGGATGGGCTCAACGGTGGGTAGATGATTTTGGATTTTTTGGTTCCGTTCCTCTTTTTAGCGCTGCTGGCTATGACCGAGTAGGAACGACCGTGCATCATCCTGGCATTCAGGCCGTTGGCCATGGAGAAGGACTTCAGATGGCTCTTTAAGGCAACAGGAAGGGGAAGTTTGTCCACAAGGTGCACTGGAGTGCAGGAAACGATGGAACGACAGCAAAGGTCCTGCAGACTC

Function

NR:

description
PREDICTED: ras-related protein Rab-40B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130514 True 1048 lncRNA 0.39 2 14028426 14090868

Neighbor

gene id symbol gene type direction distance location
lrrc59 lrrc59,LOC107755517,LOC107684048,LOC107722190,LOC107581574 coding upstream 28099 13997306 ~ 14000327 (+)
LOC122355878 LOC107755407,LOC107566757,LOC107702425,LOC107722184 coding upstream 31363 13993668 ~ 13997063 (+)
habp2 LOC107684127,LOC107722212,LOC107581633 coding upstream 55776 13968509 ~ 13972650 (+)
LOC122355687 dnmbp,LOC107755522,LOC107702462,LOC107722208,LOC107684043,LOC107566369 coding upstream 60769 13925760 ~ 13967657 (+)
cpn1 cpn1,LOC107722209,LOC107684044,LOC107702463,LOC107755523 coding upstream 105740 13914176 ~ 13922686 (+)
hlfb hlf,LOC107566512,LOC107702475,LOC107581580,LOC107684053,LOC107722239 coding downstream 45797 14136665 ~ 14142072 (+)
ankfn1 ankfn1,LOC107702427,LOC107684130,LOC107722232 coding downstream 92714 14183582 ~ 14215651 (+)
nog3 nog,nog3,LOC107702438,LOC107566874,LOC107722200,LOC107684148,LOC107581671 coding downstream 132076 14222944 ~ 14224109 (+)
rbfox3a LOC107566522,LOC107755508,LOC107684054,LOC107581581,LOC108435270,LOC107702478,LOC108273414 coding downstream 188848 14279716 ~ 14643378 (+)
csnk1db csnk1db,LOC107566590,LOC107684056,LOC107702480,LOC108435268,LOC103030301,LOC107755503 coding downstream 582336 14673204 ~ 14684302 (+)
G88111 NA non-coding upstream 311294 13715584 ~ 13717132 (+)
G88106 NA non-coding upstream 318187 13710004 ~ 13710239 (+)
G88079 NA non-coding upstream 448135 13580078 ~ 13580291 (+)
G88063 NA non-coding upstream 488403 13539789 ~ 13540023 (+)
G88062 NA non-coding upstream 490338 13536166 ~ 13538088 (+)
G88238 NA non-coding downstream 51845 14142713 ~ 14218976 (+)
G88270 enpp7.1,LOC107755405,LOC107684149,LOC107722193,LOC107581672,LOC107755509 non-coding downstream 142644 14233512 ~ 14243310 (+)
G88269 enpp7.1,LOC107684149,LOC107722193,LOC107755405,LOC107581672,LOC107702441 non-coding downstream 146545 14237413 ~ 14238303 (+)
LOC122355796 NA non-coding downstream 154484 14245352 ~ 14267029 (+)
G88296 NA non-coding downstream 690047 14780915 ~ 14783938 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other upstream 35382 13978171 ~ 13993044 (+)
LOC122355339 LOC107702424 other upstream 123799 13894361 ~ 13904627 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other upstream 163683 13855695 ~ 13864743 (+)
G88082 NA other upstream 432078 13595794 ~ 13596348 (+)
G88016 NA other upstream 583511 13441943 ~ 13444915 (+)
stxbp4 stxbp4,LOC107702473,LOC107581670 other downstream 15088 14105956 ~ 14131785 (+)
sfxn2 sfxn2,timp2a,LOC107755483,LOC107722238,LOC107581595,LOC107690949,LOC107565802,LOC107755484,LOC107684079,LOC103024286 other downstream 839211 14930079 ~ 14940191 (+)
si:dkey-21c1.4 LOC107755475,LOC107576597,LOC107690918 other downstream 1216558 15307426 ~ 15312004 (+)
qki2 qki2,LOC108426533,LOC107755469,LOC107690925,LOC107601430,LOC103029551 other downstream 1255677 15346545 ~ 15378101 (+)
LOC122355837 ndst2b,LOC107601424,LOC107755463,LOC107690932,LOC107749844,LOC107684097,LOC107561853,LOC108410510 other downstream 1360626 15451494 ~ 15774014 (+)

Expression


Co-expression Network