LOC122355837 (ndst2b,LOC107601424,LOC107755463,LOC107690932,LOC107749844,LOC107684097,LOC107561853,LOC108410510)


Basic Information

Item Value
gene id LOC122355837
gene name ndst2b,LOC107601424,LOC107755463,LOC107690932,LOC107749844,LOC107684097,LOC107561853,LOC108410510
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 15451494 ~ 15774014 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU130982
AGCTGCTGTTCGTGGATGCTGTGGGTTATTTAACTGGCAGAAGGCTCAGCCTCTCGTTGGACAGATTTTTGCTTGTTGACGTGGATGACATCTTTGTTGGGAAGGAGGGGACACGCATGAAAGTGGCAGATGTTGAGGCACTGcttcacacacaaaacaaactccGTTCTCTGGTCCCTAATTTCACCTTCAACCTGGGATTCTCTGGCAAGTTTTTTCATACAGGTACAGATGAAGAAGATGAGGGTGACGACACACTGCTTCGGCACCGACAGGAGTTCTGGTGGTTCCCGCACATGTGGAGTCACATGCAGCCTCATCTCTTCCACAACGTCAGCGTACTCGCGGAACAGATGAGACTTAACAAACAGTTTGCACAGgagCATGGTATCCCCACAGACATGGGTTACGCTGTAGCCCCCCATCACTCAGGTGTGTACCCTGTGCACAGTCAGCTTTATGAGGCCTGGAAAAACGTATGGGGCATCAAGGTGACCAGCACAGAAGAGTATCCTCATCTCAGGCCTGCCCGCTATCGCA
>TU130987
CGCGGGCTGAAGATGGCGGAGCAGCGCGAGCGGCGCAGGATGCGCTCACGAGACATCAAAGTTCTCTCTGTGGCGCTCAATTGATTCGGATATTCGCGACCGCTCTCAAAGTGGGCTTCTACAAAGgaTGGACAGGAGGTTCTGCTAGAAAACATTTCTCTCATGCTTTGATTGTTCAAGCGGATACATGAAGTGGCAGAAGGTTTCAAGCCAAAGGAGCAAcatccaaaataacaaacaaatgagCTGTCTTTTCACGTGATGCCTCCAGCTACTTTCCTATAGGCTTGATATATGGATGAGAAGAGTAccatacaaaaaaagagacaccgGAGCGGCGATTTCGTCGCAGGCTATGGGGGCCATGGTGACCTAGAGTCAATAGTCGTTTCCTGGCAGGTCAACTTGTTTCCAGTTTAATCCCTGCTTGCTCTCTTTGTCTTCTACCTCCCCACCAGAGTGAGGCGCCAccctctctctgtttctgccACCCACTTGGCCGAGACAGCTATGGCTGGAGTGAGAAAGTTGGCACGAGTAGTCAGGCACCAGGGTCTCCACCGCCTGATCTTTGCACTCATCCTTTTCTGTCTACTCTCCATGGCCTACTTGGCTTATCACGTTAGTGCTGGACCCAAGATCAAGGAGGCCCCTGTGCCATTACCGCTGGGGGACTGTGTAGCTACATCTGTAGTTGGTGGTGGACAAAGGACTCCACTGTTCCTGCCATCACAGGTCAGCCAACGGCGACAGTCAGCGAGAACAGCAGATACCTCTCGGACAGAGCCCGTGGTGTTACTCTTTGTGGAAAGCATCTACTCCCAACTTGGACAAGAGATTGTAGCCATTTTAGAGTCAAGCCGCTTTCATTACCGCACTGAAATT
>XM_043254400.1
CCGGCAGACGCAAGAACATCTCATGCCTTCAGCCTGGAGCGATGCGCGAGAAATAGCGTGTTGCGTGACATGTTGGGAGAACAACTGGgaTGGACAGGAGGTTCTGCTAGAAAACATTTCTCTCATGCTTTGATTGTTCAAGCGGATACATGAAGTGGCAGAAGGTTTCAAGCCAAAGGAGCAAcatccaaaataacaaacaaatgagCTGTCTTTTCACGTGATGCCTCCAGCTACTTTCCTATAGGCTTGATATATGGATGAGAAGAGTAccatacaaaaaaagagacaccgGAGCGGCGATTTCGTCGCAGGCTATGGGGGCCATGGTGACCTAGAGTCAATAGTCGTTTCCTGGCAGGTCAACTTGTTTCCAGTTTAATCCCTGCTTGCTCTCTTTGTCTTCTACCTCCCCACCAGAGTGAGGCGCCAccctctctctgtttctgccACCCACTTGGCCGAGACAGCTATGGCTGGAGTGAGAAAGTTGGCACGAGTAGTCAGGCACCAGGGTCTCCACCGCCTGATCTTTGCACTCATCCTTTTCTGTCTACTCTCCATGGCCTACTTGGCTTATCACGTTAGTGCTGGACCCAAGATCAAGGAGGCCCCTGTGCCATTACCGCTGGGGGACTGTGTAGCTACATCTGTAGTTGGTGGTGGACAAAGGACTCCACTGTTCCTGCCATCACAGGTCAGCCAACGGCGACAGTCAGCGAGAACAGCAGATACCTCTCGGACAGAGCCCGTGGTGTTACTCTTTGTGGAAAGCATCTACTCCCAACTTGGACAAGAGATTGTAGCCATTTTAGAGTCAAGCCGCTTTCATTACCGCACTGAAATTGCACCGGAAGGGGGACATGCCCCTTTAGCTTGGCGAGGTCGTGGCCGATACACACTTATCGTCTATGAGAATCTGCTCAAGCACGTCAACTTGGACTCATGGAACCGCCAGTTACTGGATAAATACTGCCAAGACTATGGAGTGGGAATCATTGGCTTCTATCGGGCAAATGAAAACTCCCCATCCAGTGCTCAGCTTAGAGGCTTCCCTCTCTTCTTGCGATCAAACATGCCACTTTGGGATTACAAAGTCAACCCTGCTGCACCCTTGCTCTACATCACCAAACCTAATGAGCTGGAACCTGGTCCTTTACCTGCGGACAACTGGACCACTTTCCTGTCCAACCACAGCACTTATGAGCCTGTACTGTTAGCTAGCCCCAGACCAGCTGAACCCAATCAGCTCCCGACACACTCACACCAACAGAGAGCTCTGCTGGCTACGGTTATGCAAGACCTAGGTCTTCACGATGGGATCCAACGGGTGTTCTTTGGAGGTAGCCTCTTTTGGCTGCACAAGCTGCTGTTCGTGGATGCTGTGGGTTATTTAACTGGCAGAAGGCTCAGCCTCTCGTTGGACAGATTTTTGCTTGTTGACGTGGATGACATCTTTGTTGGGAAGGAGGGGACACGCATGAAAGTGGCAGATGTTGAGGCACTGcttcacacacaaaacaaactccGTTCTCTGGTCCCTAATTTCACCTTCAACCTGGGATTCTCTGGCAAGTTTTTTCATACAGGTACAGATGAAGAAGATGAGGGTGACGACACACTGCTTCGGCACCGACAGGAGTTCTGGTGGTTCCCGCACATGTGGAGTCACATGCAGCCTCATCTCTTCCACAACGTCAGCGTACTCGCGGAACAGATGAGACTTAACAAACAGTTTGCACAGgagCATGGTATCCCCACAGACATGGGTTACGCTGTAGCCCCCCATCACTCAGGTGTGTACCCTGTGCACAGTCAGCTTTATGAGGCCTGGAAAAACGTATGGGGCATCAAGGTGACCAGCACAGAAGAGTATCCTCATCTCAGGCCTGCCCGCTATCGCAGAGGCTTCATACACAACGGCATACAGGTGGCTTCCCGGCAGACCTGTGGGCTTTTCACACATACCATCTTCTACAAAGATTATCCAGGAGGCCCTCAGGAGCTGGACAAGAGCATTCGCGGTGGAGAGCTGTTTCTTACAGTGCTGCTCAATCCTGTCAGTATATTCATGACTCACCTGTCAAACTACGGCAATGACCGACTGGGCCTGTACACCTTTGAGTCACTGGTGAGGTTTGTGCAGTGCTGGACTCACCTGCGCCTGCAGACTCTGCCTCCAGTCCGCCTCGCTCAGAAATACTTCCATTTTCCTGATGAGAGAGACCCCTTGTGGCAGAACCCGTGTCATGACAAGAGACACAAAGACATCTGGTCCAAAGAGAAGACCTGTGACAGACTACCTAAGTTTATAGTGATTGGCCCTCAGAAGACCgGTACCACCGCGCTTCACTCGTTTCTTGCCCTTCACCCTGCCATTACCAGCAGCTTCCCCAGCCCCGTCACCTTTGAGGAGGTGCAGTTCTTCAGCGGACCAAACTACCAGCGTGGCATTGACTGgTACATGGATTTTTTCCCTGTACCCTCAAATGTGAGCACAGACTTCCTGTTTGAGAAGAGCGCAAACTACTTTGACACTGAAGTTGCTCAAGAGAGCAGCCGCCCTTTACCAAGAGCCAAAATCATCTCCATACTCATCAACCCTGCCGACCGGGCGTATTCATGGTACCAGCATCAGAGGGCTCATCAGGACCCTGTGGCGCTAAACTACACGTTTCATGAGGTGATCTCTGCAGGGCCGTCGTCCCCCGCAGCTCTGCTGTCTCTGCACCGCCGCTGCCTGCAGCCTGGAGCCTACAGCAGCCATCTGGAGCGCTGGTTACACCACTACCAGCCCagtcagCTGCTGATCGTGGACGGCGTTCAGCTGCGCTCCAGTCCTGCTCAGGTGATGGATGGCATTCAGAAATTCCTCGGCGTCACACCTTACTTCAACTACACACAGGCGCTGACgtttgaCGAGAGTAAAGGTTTCTGGTGTCAGAAAGTGGAGGCAGGACGTACTCAGTGTCTGGGAAAGAGCAAAGGAAGGAAGTATCCAGAAATGAGCCTGGAGTCGATGGTGTTTCTGTCGGAGTATTACCGTGAGCAGAACGTGGAGTTACTCAGGATGTTGAAACGTCTGGGTCAGCCTCTGCCCATTTGGCTCAGAGATGAACTGCACAACGCCAGCTGGAGCTGATCAGAAGCAGCATAAGGAGAACCACGGCAGAACCCTGCTCCACACAGGAGAACTCAGGGCCCCCGTGCGGCAGGAGCCAAAAGAGGACCGACCCCTCTCGCCCTCCATACTCCGCACAGGCTCTGATGGTATAGACGAGCCGATCACGCTGTCAGTCTGAACCAAGCCCTCAGAGTCACGGGAGAAGCCCTCAATCTGATTATGGGAACTTGTAGTGGACGTTCACGGATTCAAAGGCATGGAAATGGCAGCGACCCGATTGGACAGCTTTAAAAAAGACTCCTAGAGTGGTTGAACTGgatgttttgaaatgcaaatatagtCTTCTAGGAAGAGAGGGAATCGCACAGAACCTCTAGGAGCATTTTGTGGAAATACCCATGAAAGGAAGGGACTATGAGaggattatttaaattttattctcAAAAGTCTTTAACTCTGCTAAGCAGAgaagtatttaaatatgtgtcTCATGAATTTATTGCCATCTCGCTgctgcctttctcaaaacagTTGCTGTTGAGGTGATTTCTGTTTGACGTCAAAAAACATTGTGCGGCCCAAGCAGCTGTAAAGACGACGAGGTGgccactttttaatttaatgatccGGACAagtgtttctttattaaaatttttttttttttttaatccctgcattattattcaaaagtttggggttggtaagatttgttatttttcaaaaagaagGCTCTtaagctcaccaaggctgcatttatttgagcaaaaatacaaaaaaaaaaaaaaaaaaactagaataTAACGTTATCTTAGCAACATTCAAAATGGAACCTCTGGAATCTTCAGTATGGAATTATTGCCAGCCAGTCCAGACGATTTCATCAACAATGTTCTATGATAATACGTTTGAACTAGGATTTGGAACCGTCTGATATCAGTGCAGAACCaaagcaaaactgtttttatacGTGCCAAACTAAATAGCACCTGGAAAACCTTTTTTATATGGCCCATATGACAACTACGTTATACTGTACTGAGTGAATGTGCATTGTGTATGTGTAGCAACAGTTGGATACATAAGAATCAACAGTAACGTGATCCCAAGTCATGTCTGGTGTTCAGTTCAAGTACACACATATTGGGAAATAAAGGCACAGAATGGAGA

Function

symbol description
ndst2b Predicted to enable [heparan sulfate]-glucosamine N-sulfotransferase activity and hydrolase activity. Predicted to be involved in heparin biosynthetic process. Predicted to be located in Golgi membrane. Is expressed in alar plate midbrain region; brain; midbrain neural rod; optic tectum; and rhombomere. Orthologous to human NDST2 (N-deacetylase and N-sulfotransferase 2).

NR:

description
PREDICTED: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2-like isoform X1

GO: NA

KEGG:

id description
K02577 NDST2; heparan sulfate N-deacetylase/N-sulfotransferase NDST2

RNA

RNA id representative length rna type GC content exon number start site end site
TU130982 False 540 TUCP 0.51 4 15763897 15766340
TU130987 False 885 TUCP 0.51 2 15451494 15763376
XM_043254400.1 True 4291 mRNA 0.49 18 15718179 15774014

Neighbor

gene id symbol gene type direction distance location
si:ch73-127m5.1 si:ch73-127m5.1,LOC107690930,LOC107755465,LOC107749846,LOC107684096,LOC108410513,LOC108273477 coding upstream 897 15420652 ~ 15450597 (+)
syt15 syt15,LOC107749849,LOC107601428,LOC107690928,LOC107684091,LOC107755468 coding upstream 44188 15401427 ~ 15407306 (+)
timm23a timm23a,LOC107690962,LOC107684090,LOC107749852,LOC107561858,LOC108426535 coding upstream 62039 15384777 ~ 15389455 (+)
prph2a prph2,prph2a,LOC107601435,LOC107581607,LOC107684088 coding upstream 124463 15322269 ~ 15327031 (+)
tbcc LOC107755474,LOC107690923,LOC107601434,LOC107684155,LOC107749866,LOC107581680 coding upstream 129742 15320498 ~ 15321752 (+)
chmp6b chmp6b,LOC107749864,LOC107684156,LOC107755461,LOC107690936,LOC108429718 coding downstream 97143 15871157 ~ 15873970 (+)
btbd17a btbd17a,LOC107755452,LOC107597820,LOC107690956,LOC107753244,LOC107684110 coding downstream 333044 16107058 ~ 16114050 (+)
map2k6 LOC107684112,LOC107753245,LOC107597823 coding downstream 351900 16125914 ~ 16135698 (+)
unk unk,LOC107597825,LOC107561840,LOC107684115,LOC107704242,LOC107755394 coding downstream 476359 16250373 ~ 16260706 (+)
trnag-ccc_1 NA coding downstream 499789 16273803 ~ 16273873 (+)
G88509 NA non-coding upstream 211130 15239969 ~ 15240364 (+)
G88455 NA non-coding upstream 524081 14921169 ~ 14927413 (+)
LOC122355815 NA non-coding upstream 532455 14917762 ~ 14919039 (+)
G88296 NA non-coding upstream 667556 14780915 ~ 14783938 (+)
LOC122355796 NA non-coding upstream 1184465 14245352 ~ 14267029 (+)
G88563 NA non-coding downstream 81742 15855756 ~ 15857952 (+)
G88559 LOC107690934,LOC107755462,LOC107749843 non-coding downstream 91022 15865036 ~ 15865873 (+)
G88732 NA non-coding downstream 203459 15977473 ~ 16014131 (+)
G88734 NA non-coding downstream 216679 15990693 ~ 15994265 (+)
G88741 LOC107690939,LOC107601418,LOC107561818 non-coding downstream 220462 15994476 ~ 15996007 (+)
qki2 qki2,LOC108426533,LOC107755469,LOC107690925,LOC107601430,LOC103029551 other upstream 73393 15346545 ~ 15378101 (+)
si:dkey-21c1.4 LOC107755475,LOC107576597,LOC107690918 other upstream 139490 15307426 ~ 15312004 (+)
sfxn2 sfxn2,timp2a,LOC107755483,LOC107722238,LOC107581595,LOC107690949,LOC107565802,LOC107755484,LOC107684079,LOC103024286 other upstream 511303 14930079 ~ 14940191 (+)
stxbp4 stxbp4,LOC107702473,LOC107581670 other upstream 1319709 14105956 ~ 14131785 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other upstream 1458450 13978171 ~ 13993044 (+)
baiap2b baiap2b,LOC107684102,LOC107749842,LOC107690938,LOC107755398,LOC108273716 other downstream 59270 15833284 ~ 15928026 (+)
LOC122355667 LOC107704244,LOC107753270,LOC107684139,LOC107561814,LOC107755395 other downstream 461921 16235935 ~ 16239783 (+)
si:ch211-250n8.1 si:ch211-250n8.1,LOC107704243,LOC107753284,LOC107755421,LOC107597839,LOC107684159 other downstream 468855 16242869 ~ 16249690 (+)
fbxw10 LOC107704232,LOC107755393,LOC107580469 other downstream 500662 16274676 ~ 16282229 (+)
rpl38 NA other downstream 1412382 17186396 ~ 17189614 (+)

Expression


Co-expression Network