pmp22b (pmp22,LOC107561836,LOC107684480,LOC107597829,LOC107692454,LOC107753252)


Basic Information

Item Value
gene id pmp22b
gene name pmp22,LOC107561836,LOC107684480,LOC107597829,LOC107692454,LOC107753252
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 16599895 ~ 16609807 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU131602
CTCCACACGGCACATTAATCTAGTCGCAGGGATCTGGACTTTGGAAATACGCAGTGCTTTTGACACGAGTGGCGCGGCTGCATTTCGGCGTTTTCTTCCAATTTTTGTGGACTTACTTTCGCTTTGCTCGCAAACCTTAAGGAAACATCATGCTGCTCCTCTTACTGGGAATCGTCGTCTTGCATGTGGCAGCACTGGTTCTGCTCTTCGTGTCTACTATAGTCAGCGCATGGGCTGTTAACCCCACCAGCAGTTCAGACCTCTGGACAAACTGCACCACACTGAATGGAGCAAGTAAATGTGACCCTGCTGACACAGGAGGTCTTTTCGTTATGAGCGGAGCTATCATTTATACGGTAATGAACTCCCAATGGGTCCCTGAGTCAGAGTCCTACGGCTTTTCCTACATCCTGGCCTGGGTAGCCTTCCCTCTGGCGTTCATAAGCGGCTTAATCTACGTCATCTTGAGAAAACGAGAGTGAGGTGGCACCACTCTCTAGTGGCCGCCACCTGAAAATACAGCTCCGAAGCCAAAGTATCGCACTGCATCCACAGAGAAGTGAAATCACGCAATCTCTTCACCCAGGGGGTCAGTCGAAACCAACCCCGCTGCCACCCCCAAAAGACATATTCAATACTGTCATCATTTGAAGATGTGTATATAGTATCTTTGGTTTAAAACCtatttataacactttttacatatatgtacatagtATTTTATGTTTGCTCTGTTGACAAAGAACCTCTGAGAGCTTTTCTTTTAGCTAATTAAGTGCCTAGAGTGTATGTTTGTCGCAGAAACGTGCATCATTAGCcataatgtgtgtttgtctccatttttctttcctttataaggccaaaaatactaaaaaggtTTTGGATGTATTTTAACCAAAGTGCATGTATTAAATTCTAGGGACAACAAAAGGAAGTGTTTTCAATGAAGCTGCAATTTAGAGAATTTAGAGATGAggtaccttaaaaaaaaaaaaacagttagaTCGGCAGTTTTGAAAGCTTTGTTTTGgtagtttttgttttccaaCAAAAAATGGTGCTATGTATTTACCATTCCTTTAACTAATAGCCATTTAGACTTTATTTAGAAGGACATAACATGACTGAAAGCCAAATTCAGAACGCCATTGAATATTTTGTGCTTGTGCCTATAACGCAATGCTGTATATACAGtactcactgaaaaaaaaaagttcattttataataaaacaaacaaaatgtgttCTGAATAACATGTGGTTATTAGTTTAGATTTGGGAGATTGCGATGGAGGAATTGTAGTAAAAACAGAGACTTGGAATTATTGATTTTAGTTGGATttttaaagttacttttaaGAGCAGTATTAGCAGCAGGATTTGAGAAAGGCGGTAATTCAGTAAATGTCGCTCatgtaatacaatttaaatgtataatgtttgaTGGATTTGGTCACTTGTTAGCTGTTACTATAATCGGGGCATTACATAATTAAACAGTTGAGGCGAAGGCCCTGCATATTCAAATCAGACtagcatataaaaatataaagtgaacATGAAATGAAGGTATAGTTTTTAATAGGTATAGTATCAAAATGACAGCTTACAAATCtctatatacacaatatatccataaaaacatttaaaagcatcctAGTGGCAGTtatgttgtgtaaaaaaaaatgtgttatgaaCTGACCACTGATGGTGGACACACCATAACACCTGCATGCATGGAAAGATTTTTCAATACTTGAAATATAACATGCTGCGATGTCTACCATTTGCGAGATGCTTCCGTTTCTACTCACATAACTCACAGTAATTCACAATGTACTGTAATAGCATGTGATTGTATTAAAAGAGAAACGTATTACTTACAATTAAAGGCCCTATTCTGAGGACCATGTATTAGATTGCTTCTCCTGCAActccaaaaacaataaatgatgttttgttATGATGAACTGATCACGTTGCCTGTTTTCATGGCCTGGTGAATGTCTCAcccttctgcttttttttttttttttttgtgacaaccATTTATTTTACCTGCAATAAAACAGTTTATGATACGTTTTTGTGTGTAAAGGGATTTCTGTATGTAGCGCTTGATAatccctttaaaaatattaacatataatcGATATGTGGTCTGTTCTGACGTGGGACCAGCACTAGAAAAATGTTGCATGTGCTAATTTCCCTACATAATTTAGACTACAGTCGTTACTTGACAGTGTAAGGCTAAAGCCTGAAATAACAACCGATTTGTGTTGTATTCGTTCGATCTGGCTGAACAGTTGTAGACGgtgtaaaatttgtatttaattgaaTGTCGTGGTGCTCCTTCTGAAAACAGCTGTACTGTAAGTCATGTCTGAAGGAGTGTGAGCTCTGATGAAGACTGTTCATTCACGAGAACCCAACTTGTGCCTCTGACTCGCCTCTTTTATCaaagcttgtgtttgtgtgtttattaaaagctattaaaaaaaaacactgcttgcCGGAAA
>XM_043253897.1
ATAATGAGACTCTTTAAAGCCGCTGCTCCACACGGCACATTAATCTAGTCGCAGGGATCTGGACTTTGGAAATACGCAGTGCTTTTGACACGAGTGGCGCGGCTGCATTTCGGCGTTTTCTTCCAATTTTTGTGGACTTACTTTCGCTTTGCTCGCAAACCTTAAGGAAACATCATGCTGCTCCTCTTACTGGGAATCGTCGTCTTGCATGTGGCAGCACTGGTTCTGCTCTTCGTGTCTACTATAGTCAGCGCATGGGCTGTTAACCCCACCAGCAGTTCAGACCTCTGGACAAACTGCACCACACTGAATGGAGCAAGTAAATGTGACCCTGCTGACACAGGAGtttggaTCCAGGCAGTCCAAGCTCTCATGATCCTGTCAATCATCTTCAGCTTCCTGTCTCTCTTCCTGTTCTTCTGCCAGCTCTTTACCCTCCAGAAGGGAGGACGGTTCTTCCTCACTGGAGCATTCCAGATCTTTGCTAGTCTTTTCGTTATGAGCGGAGCTATCATTTATACGGTAATGAACTCCCAATGGGTCCCTGAGTCAGAGTCCTACGGCTTTTCCTACATCCTGGCCTGGGTAGCCTTCCCTCTGGCGTTCATAAGCGGCTTAATCTACGTCATCTTGAGAAAACGAGAGTGAGGTGGCACCACTCTCTAGTGGCCGCCACCTGAAAATACAGCTCCGAAGCCAAAGTATCGCACTGCATCCACAGAGAAGTGAAATCACGCAATCTCTTCACCCAGGGGGTCAGTCGAAACCAACCCCGCTGCCACCCCCAAAAGACATATTCAATACTGTCATCATTTGAAGATGTGTATATAGTATCTTTGGTTTAAAACCtatttataacactttttacatatatgtacatagtATTTTATGTTTGCTCTGTTGACAAAGAACCTCTGAGAGCTTTTCTTTTAGCTAATTAAGTGCCTAGAGTGTATGTTTGTCGCAGAAACGTGCATCATTAGCcataatgtgtgtttgtctccatttttctttcctttataaggccaaaaatactaaaaaggtTTTGGATGTATTTTAACCAAAGTGCATGTATTAAATTCTAGGGACAACAAAAGGAAGTGTTTTCAATGAAGCTGCAATTTAGAGAATTTAGAGATGAggtaccttaaaaaaaaaaaaacagttagaTCGGCAGTTTTGAAAGCTTTGTTTTGgtagtttttgttttccaaCAAAAAATGGTGCTATGTATTTACCATTCCTTTAACTAATAGCCATTTAGACTTTATTTAGAAGGACATAACATGACTGAAAGCCAAATTCAGAACGCCATTGAATATTTTGTGCTTGTGCCTATAACGCAATGCTGTATATACAGtactcactgaaaaaaaaaagttcattttataataaaacaaacaaaatgtgttCTGAATAACATGTGGTTATTAGTTTAGATTTGGGAGATTGCGATGGAGGAATTGTAGTAAAAACAGAGACTTGGAATTATTGATTTTAGTTGGATttttaaagttacttttaaGAGCAGTATTAGCAGCAGGATTTGAGAAAGGCGGTAATTCAGTAAATGTCGCTCatgtaatacaatttaaatgtataatgtttgaTGGATTTGGTCACTTGTTAGCTGTTACTATAATCGGGGCATTACATAATTAAACAGTTGAGGCGAAGGCCCTGCATATTCAAATCAGACtagcatataaaaatataaagtgaacATGAAATGAAGGTATAGTTTTTAATAGGTATAGTATCAAAATGACAGCTTACAAATCtctatatacacaatatatccataaaaacatttaaaagcatcctAGTGGCAGTtatgttgtgtaaaaaaaaatgtgttatgaaCTGACCACTGATGGTGGACACACCATAACACCTGCATGCATGGAAAGATTTTTCAATACTTGAAATATAACATGCTGCGATGTCTACCATTTGCGAGATGCTTCCGTTTCTACTCACATAACTCACAGTAATTCACAATGTACTGTAATAGCATGTGATTGTATTAAAAGAGAAACGTATTACTTACAATTAAAGGCCCTATTCTGAGGACCATGTATTAGATTGCTTCTCCTGCAActccaaaaacaataaatgatgttttgttATGATGAA

Function

symbol description
pmp22 Predicted to enable cytoskeletal motor activity. Involved in bleb assembly and cell death. Located in plasma membrane. Implicated in Charcot-Marie-Tooth disease (multiple); Guillain-Barre syndrome; and hereditary neuropathy with liability to pressure palsies.

NR:

description
peripheral myelin protein 22-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131602 True 2522 TUCP 0.38 4 16599895 16609782
XM_043253897.1 False 2136 mRNA 0.39 5 16600447 16609807

Neighbor

gene id symbol gene type direction distance location
si:ch211-216b21.2 si:ch211-216b21.2,hs3st3b1b,LOC107755450,LOC107753271,LOC107561826,LOC107684140,LOC107704231,LOC107082319,LOC107753250,LOC102229454 coding downstream 208291 16355234 ~ 16391604 (-)
unc13d unc13d,LOC107597824,LOC107755420,LOC107704240,LOC107753247,LOC107684114,LOC107561838 coding downstream 327198 16260691 ~ 16272697 (-)
kcnj16 kcnj16,LOC107597837,LOC107561828,LOC107755422,LOC107753283,LOC107684158 coding downstream 407157 16184071 ~ 16192738 (-)
kcnj2a LOC107704237,LOC107597836,LOC107755424,LOC107561842,LOC107753246,LOC107684113 coding downstream 415966 16175638 ~ 16183929 (-)
gpr142 gpr142,LOC107690947,LOC107561843,LOC107753243,LOC107684111,LOC103030394 coding downstream 499462 16088605 ~ 16100433 (-)
tekt3 tekt3,LOC107684491,LOC107753251 coding upstream 7403 16617210 ~ 16624013 (-)
cdc42ep4b cdc42ep4,cdc42ep4b,LOC107755444,LOC107753254,LOC107692456,LOC107597830,LOC107561835 coding upstream 56743 16666550 ~ 16685032 (-)
sdk2b sdk2b,sdk2,LOC107721024 coding upstream 75541 16685348 ~ 17000243 (-)
LOC122355169 NA coding upstream 1874994 18484801 ~ 18487219 (-)
dpysl4 dpysl4,LOC107582189,LOC107653119,LOC107706606,LOC107654562,LOC107568139 coding upstream 1974719 18584526 ~ 18597399 (-)
G88836 galr2,LOC107704244,LOC105893566 non-coding downstream 363333 16236340 ~ 16236562 (-)
G88833 NA non-coding downstream 376480 16223215 ~ 16223415 (-)
G88829 NA non-coding downstream 419973 16133870 ~ 16179922 (-)
G88821 NA non-coding downstream 489456 16110165 ~ 16110439 (-)
G88710 NA non-coding downstream 677817 15869805 ~ 15922078 (-)
G88925 NA non-coding upstream 39667 16649474 ~ 16650775 (-)
LOC122355199 NA non-coding upstream 43540 16653347 ~ 16657017 (-)
G88964 NA non-coding upstream 577847 17187654 ~ 17189281 (-)
G88988 NA non-coding upstream 668446 17278253 ~ 17279855 (-)
LOC122355860 NA non-coding upstream 1007117 17616924 ~ 17639927 (-)
bicral gltscr1l,LOC107690921,LOC107601433,LOC107749855,LOC107684087,LOC107581606 other downstream 1280037 15310569 ~ 15319858 (-)
si:dkey-21c1.1 tepsin,si:dkey-21c1.1,LOC107601406,LOC107755426,LOC107684135,LOC107749856,LOC107601412,LOC107581605,LOC107749858 other downstream 1293386 15300297 ~ 15306509 (-)
ndufaf8 NA other downstream 1304655 15293833 ~ 15295240 (-)
LOC122355209 NA other downstream 1893644 14702568 ~ 14706251 (-)
G88365 NA other downstream 1956115 14541566 ~ 14643780 (-)
G88940 sdk2,sdk2b,LOC107721024,LOC107753272,LOC107597834 other upstream 106612 16716419 ~ 16719298 (-)
G88941 sdk2,sdk2b,LOC107692460,LOC107574310,LOC107753272 other upstream 111884 16721691 ~ 16722638 (-)
G89025 si:dkey-239b22.1,LOC107684476,LOC107561407,LOC107718529,LOC107740842 other upstream 713954 17323761 ~ 17331226 (-)
G89070 NA other upstream 1292687 17902494 ~ 17902881 (-)
jakmip3 jakmip3,LOC107654564 other upstream 1990535 18600342 ~ 18640994 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G347519 NA non-coding CI01000136 null 195567 ~ 261727 (+)