tomm22 (tomm22,LOC107690071,LOC107554024,LOC107734246,LOC107584213,LOC107692102,LOC107731386)


Basic Information

Item Value
gene id tomm22
gene name tomm22,LOC107690071,LOC107554024,LOC107734246,LOC107584213,LOC107692102,LOC107731386
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8531984 ~ 8534641 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253014.1
CCTCAGAAGAAACCGGGGAAGTGATTCCGTCTCACATGTAACCCAAGTGACCTCAGGTTTCAATGCGTGCTCTTTGGTTGTAAGTCGTTGTGAAGCTGTAAAACATCACCGAGGTCCTTTCGCAATTATAATATACCGTTTACAGCTAAAAGTGACTAGCGTCGTGTTTTAAATGGCTACTATCCAGGAGCTGTCTCCAGACTCTATCCGTGGGGAGACGCGACCCCCCGAAGACGAGATCGAgggtgatgatgaggatgaagagtTGGATGAAACCCTTTTGGAGAGGCTGTGGGGTCTCACAGAGATGTTTCCAGACTCGCTACGATCAGCAGCTGAAGTTTCTGCACAGTGTTCGCTATCTGTAGCCAAAAAATTTTACAGTTTCTCCCGTTCAGCTCTATGGGTCGGTACTACTTCCTTTATGATTCTGGTTCTGCCGGTCGTCTTTGAGACTGAGAGGTTACAGCTGGAACAGCAACAACTACAACAGCAGAGACAGATTTTGTTGGGTCCAAATGCTGGCATGTCTGGAGGAATGCCTGGAATGATGGCTCCTGCTCCTGGGAAGCTGTGatgatgtgtatatattgtaaCATCCATGAGTTGTAGAAGAAGGGTAAAGAGTGAGGGAGCAGGAACTGGAGAATGATGTCACAAGATGCTGTGGTTCGTCAaaatcatgaagtcattaccCTGTATAGTTTGTTTGTACAGTTGAGACCTtgatgactttttatgatcttccctctctctctgcctttctcaCGAAACATTCTGCATAGACTGTCATCCAAGCTCTGAtcttatacttttttattatagctATCTAataacatttctttcaaaaagagAATATAGCAGCTTTTTGGAATATTTCAACTGTGTTGTAGGTGCGTTATATTTCTGATAGGGTGTTCATGGTGCAATATTGGCCCTTGAAATGCTGGTTCAACACTGTCGAAAATATATAACAGCATTCAAAAGATCTGTAGTATTTATGAGGGCACAGAAGGCCAATGTCTGCAGATTATGGTTATTTCttgttcttgatttaaaaaaaaaaaagttaaaacccTTAGAAGTGGTTCTCTACAAACATTGTCTTTTACAGGTAGAACTGATATCATGCAAAGCTTCTGCAATGTTATTCCTCAGAAAAAGCCATAGAGTATATGCAGAaccattgtgaaatatttaaaataaaatgtttcaaagcaTTGTACATTCTGTAGTGAATAATTACGTTTGCTCAACatgacaggaataaaaacaagTCCTCCTCTGT

Function

symbol description
tomm22 Acts upstream of or within liver development. Predicted to be located in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in EVL; digestive system; epidermis; notochord; and periderm. Orthologous to human TOMM22 (translocase of outer mitochondrial membrane 22).

NR:

description
mitochondrial import receptor subunit TOM22 homolog

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0001889 liver development biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K17769 TOM22; mitochondrial import receptor subunit TOM22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253014.1 True 1288 mRNA 0.41 4 8531984 8534641

Neighbor

gene id symbol gene type direction distance location
dmc1 dmc1,LOC107690066 coding downstream 731 8528745 ~ 8531253 (-)
gspt1 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding downstream 3510 8520500 ~ 8528474 (-)
rsl1d1 rsl1d1,LOC107584214,LOC107734245,LOC107554037,LOC107692074,LOC107682682 coding downstream 11931 8517178 ~ 8520053 (-)
LOC122355887 NA coding downstream 12875 8518980 ~ 8519109 (-)
LOC122355888 NA coding downstream 13619 8518235 ~ 8518365 (-)
tmem184ba tmem184ba,LOC107690057,LOC107584104,LOC107554044,LOC107731404,LOC107692069 coding upstream 6578 8541219 ~ 8549833 (-)
csnk1e csnk1e,LOC107584103,LOC103024972,LOC107731422,LOC107690058,LOC107734231,LOC108431980 coding upstream 15743 8550384 ~ 8555651 (-)
tnrc6ba LOC107584179,LOC107690060,LOC107692068,LOC107734183,LOC107731400,LOC107554046 coding upstream 21634 8556275 ~ 8570074 (-)
sh3bp1 sh3bp1,LOC107692101,LOC107731399,LOC107690072,LOC107554025,LOC107734168,LOC107584210 coding upstream 57100 8591741 ~ 8600914 (-)
pdap1a pdap1a,LOC107734239,LOC107584100,LOC107690063,LOC107554049,LOC107731397 coding upstream 67569 8602210 ~ 8606138 (-)
G86608 NA non-coding downstream 187375 8344336 ~ 8344609 (-)
G86606 NA non-coding downstream 192169 8339456 ~ 8339815 (-)
G86576 NA non-coding downstream 241574 8290080 ~ 8290410 (-)
G86553 NA non-coding downstream 332860 8198918 ~ 8199124 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding downstream 341699 8187641 ~ 8190285 (-)
G86775 NA non-coding upstream 1332 8535973 ~ 8538206 (-)
G86798 NA non-coding upstream 62753 8597394 ~ 8628972 (-)
G86807 NA non-coding upstream 88656 8623297 ~ 8626329 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding upstream 92453 8627094 ~ 8630207 (-)
G86825 NA non-coding upstream 141005 8675646 ~ 8747077 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 18719 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 171992 8334404 ~ 8359992 (-)
G86203 NA other downstream 1143074 7388236 ~ 7388910 (-)
G86108 NA other downstream 1427766 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1860737 6670319 ~ 6671247 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 75911 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 147802 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 152857 8687498 ~ 8687570 (-)
LOC122355288 LOC107660874 other upstream 340976 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 777012 9311653 ~ 9939849 (-)

Expression


Co-expression Network