rsph10b (LOC107669165,LOC107584188,LOC107753448)


Basic Information

Item Value
gene id rsph10b
gene name LOC107669165,LOC107584188,LOC107753448
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7802834 ~ 7807610 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253021.1
TTCCGGTCGGTGTATTAGCGAATATTTCTACCTCTCTGCACCAGCGATGGCTAAAGGACACCAAATGAAAAGTTCTAACAGATCTACACCAGAAGCAACGTTTAGTAAAGCGTTTGGAGAGTCCTCCACTTCAAGTTTACGGTCAGAGTCCGTCGCAGAGCCAGACGATGTTCAAAACTCACCGAGTTCCACTGTGTGTTCCGCATCTGCCGTATCTCTGCCCACGAATGACCACCAGCAGAACCACGAGCATGATCAGTGCCGCAAAGTCCCCATTCTTCACCATATTATAGTGGAAAGGTTAGACGCTCATTCTTGCAAAAATGATAACACCCAGATTTGTTGgttaattgtgtttgttttcagatatGAGGGTGATAAGAGCGGAGACATGTTTCATGGAGAAGGTGTGGCTTATTTTCAAGGTGGTCACATTTACAAGGGTAGTTTTTCACATGGGTTAATGCATGGCCATGGTGAATATATCTGGTCAGACGGTTTAAAATATCAGGgtgatttcaaattaaatgttccTATGGGAAATGGGACTTACACCTGGTTGGATGGCAGCACTTATAAAGGAGAGGTGCACAAAGGTGTCCGTCATGGAGTCGGAGTGTATAAGTGTGCCAAAACCGCTACCGTGTACAGAGGTCAGTGGTATCTGGGCAAAAGACAGGGGCAgGGGGTAATGCACTATAACCAAGCAGACACGTCATGGTACAAGGGAGAATGGGTGAATAATTACAGAGAGGGCTGGGGAACCCGATGTTACCCATCTGGAAATGTATTTGAGGGACAATGGAGGAACAATGCTCGGCATGGAGAGGGAACGATGAAATGGGTTCAGTTGGATCAGCAATATAGTGGGCAGTGGGTAAACGGCATTCAGGATGGAAAAGGAACGCACACATGGTTGCGTAAAAGAGTTCCGTGCTCTCAGTATCCCCGTATGAACGAGTACACGGGAGAATTCGCTCAGGGCATGCGTCATGGCCAAGGACAGTTCTTTTATGCCAGCGGGGCTGTGTATTGTGGAGAGTGGAAACGTGACAAAAAACATGGACAGGGGAGGTACACTTTTGAAAATGGACGGGTGTATGAAGGGGAGTTTATTAGGGACTGCATGGCTGAATTTCCTGCCTTCACTCCTGGCCTAAGTGGAATTACGACTCCTTTTCCAGACGAGAATGATACATCAAACAGAGCGTCACAGTCAAGTACTAGCTCCTCACCACTTGGGTCCGACATGGTTTTGAACATTCAAGCCCTATTAAGCAAATTCCCTGAAGCCCACAGAGATCAAGAGTTTAAACAGGTGGAATTTGCAGTAGTGAGACACATTGGTTTGTTAAGGGAAATATACAGCTTCTACAGCCGCCTTGGACATGAGCAGTCTTCAGACAAAATATTCCCCCTCACCCACCTGCAGTTCTCTCGCTTTCTCATGGACTGTAAAGTTCACCAGCATGGAATCACATTAGCGCAAATGGATCGTCTTATCAACGATGAGGTTCATTCTCCTTTTGCTGCCATTTTACCGAGAGAGTGCGTCAGTTATATTATCATTGTGGCATATCATATTTGCCACAAAGATACTGAATCCTCTAACAACGTACTCGCAGCATGTTTTTCGGAGCTCATGAGGCAGAACATCATTCCCAATGCGAAACATGTAAAAGgGCTTCTGTTCTGCCATCCTGTCGTTGCATATAACTATTCAGACAGATGCTGGAAAATTTACCAGGACCTGTGCAAAGCCAGTTCAGTCCAGTCTGACACAATCTTGACTGCAAGACAATTTGTCTGGATGCTTAAGGACCTCTGTCTATATGACAGTGAGCTAACGGTGTCTAAAGCGTTAGAGATCCTCTCTGTGGACAATCCTGCAATTTTTGATGGAACCTACAGCAACCTGGACTTGGAGGTGAGCTTTCTGGAGTTCTTTGAGGCATTGTTGGGCTGTGCTGAGGTGAAAGGCCAAGGAATTCAAACTGAAGTTGAGAGCCAGATCGATACAAATCATCAGGACACTGTTTTAAGTTCACTTCAGtCATCCCTATCCGAGGAGACGGAGCAAAGTCCTGTGCTTGTTTTCAAAGAGACAAAACAGAACAACTGGATGAAGAAAAACTTCTTCACTCAGATATTTTTCCCTGCTTACGAGCACAGTATGGAGCTGCAGGAGGAGAGACTTGAActgagacaaaagaaaaaaaattcagctgcaGAGGCTGAAACTGCAAGATGTATAGAAAAGCTGGAGGCTAAGGAAACACAAGAGGAAGATGACAATGGAGAGATTTCAAACAATGATGTTAATTGCTTGCCTTCTACCCCCATGACCCCTGTAACCTCCACCGCATCGGTCATTTCAAAACAGTCAGTCACAAGTGGTAATAAGAAAAAGAAGTAAATCCACA
>XM_043253022.1
TTCCGGTCGGTGTATTAGCGAATATTTCTACCTCTCTGCACCAGCGATGGCTAAAGGACACCAAATGAAAAGTTCTAACAGATCTACACCAGAAGCAACGTTTAGTAAAGCGTTTGGAGAGTCCTCCACTTCAAGTTTACGGTCAGAGTCCGTCGCAGAGCCAGACGATGTTCAAAACTCACCGAGTTCCACTGTGTGTTCCGCATCTGCCGTATCTCTGCCCACGAATGACCACCAGCAGAACCACGAGCATGATCAGTGCCGCAAAGTCCCCATTCTTCACCATATTATAGTGGAAAGatatGAGGGTGATAAGAGCGGAGACATGTTTCATGGAGAAGGTGTGGCTTATTTTCAAGGTGGTCACATTTACAAGGGTAGTTTTTCACATGGGTTAATGCATGGCCATGGTGAATATATCTGGTCAGACGGTTTAAAATATCAGGgtgatttcaaattaaatgttccTATGGGAAATGGGACTTACACCTGGTTGGATGGCAGCACTTATAAAGGAGAGGTGCACAAAGGTGTCCGTCATGGAGTCGGAGTGTATAAGTGTGCCAAAACCGCTACCGTGTACAGAGGTCAGTGGTATCTGGGCAAAAGACAGGGGCAgGGGGTAATGCACTATAACCAAGCAGACACGTCATGGTACAAGGGAGAATGGGTGAATAATTACAGAGAGGGCTGGGGAACCCGATGTTACCCATCTGGAAATGTATTTGAGGGACAATGGAGGAACAATGCTCGGCATGGAGAGGGAACGATGAAATGGGTTCAGTTGGATCAGCAATATAGTGGGCAGTGGGTAAACGGCATTCAGGATGGAAAAGGAACGCACACATGGTTGCGTAAAAGAGTTCCGTGCTCTCAGTATCCCCGTATGAACGAGTACACGGGAGAATTCGCTCAGGGCATGCGTCATGGCCAAGGACAGTTCTTTTATGCCAGCGGGGCTGTGTATTGTGGAGAGTGGAAACGTGACAAAAAACATGGACAGGGGAGGTACACTTTTGAAAATGGACGGGTGTATGAAGGGGAGTTTATTAGGGACTGCATGGCTGAATTTCCTGCCTTCACTCCTGGCCTAAGTGGAATTACGACTCCTTTTCCAGACGAGAATGATACATCAAACAGAGCGTCACAGTCAAGTACTAGCTCCTCACCACTTGGGTCCGACATGGTTTTGAACATTCAAGCCCTATTAAGCAAATTCCCTGAAGCCCACAGAGATCAAGAGTTTAAACAGGTGGAATTTGCAGTAGTGAGACACATTGGTTTGTTAAGGGAAATATACAGCTTCTACAGCCGCCTTGGACATGAGCAGTCTTCAGACAAAATATTCCCCCTCACCCACCTGCAGTTCTCTCGCTTTCTCATGGACTGTAAAGTTCACCAGCATGGAATCACATTAGCGCAAATGGATCGTCTTATCAACGATGAGGTTCATTCTCCTTTTGCTGCCATTTTACCGAGAGAGTGCGTCAGTTATATTATCATTGTGGCATATCATATTTGCCACAAAGATACTGAATCCTCTAACAACGTACTCGCAGCATGTTTTTCGGAGCTCATGAGGCAGAACATCATTCCCAATGCGAAACATGTAAAAGgGCTTCTGTTCTGCCATCCTGTCGTTGCATATAACTATTCAGACAGATGCTGGAAAATTTACCAGGACCTGTGCAAAGCCAGTTCAGTCCAGTCTGACACAATCTTGACTGCAAGACAATTTGTCTGGATGCTTAAGGACCTCTGTCTATATGACAGTGAGCTAACGGTGTCTAAAGCGTTAGAGATCCTCTCTGTGGACAATCCTGCAATTTTTGATGGAACCTACAGCAACCTGGACTTGGAGGTGAGCTTTCTGGAGTTCTTTGAGGCATTGTTGGGCTGTGCTGAGGTGAAAGGCCAAGGAATTCAAACTGAAGTTGAGAGCCAGATCGATACAAATCATCAGGACACTGTTTTAAGTTCACTTCAGtCATCCCTATCCGAGGAGACGGAGCAAAGTCCTGTGCTTGTTTTCAAAGAGACAAAACAGAACAACTGGATGAAGAAAAACTTCTTCACTCAGATATTTTTCCCTGCTTACGAGCACAGTATGGAGCTGCAGGAGGAGAGACTTGAActgagacaaaagaaaaaaaattcagctgcaGAGGCTGAAACTGCAAGATGTATAGAAAAGCTGGAGGCTAAGGAAACACAAGAGGAAGATGACAATGGAGAGATTTCAAACAATGATGTTAATTGCTTGCCTTCTACCCCCATGACCCCTGTAACCTCCACCGCATCGGTCATTTCAAAACAGTCAGTCACAAGTGGTAATAAGAAAAAGAAGTAAATCCACA

Function

NR:

description
radial spoke head 10 homolog B-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253021.1 True 2423 mRNA 0.45 17 7802834 7807610
XM_043253022.1 False 2357 mRNA 0.45 18 7802834 7807610

Neighbor

gene id symbol gene type direction distance location
pms2 pms2,LOC107753423,LOC107594169,LOC107724702 coding upstream 535 7796260 ~ 7802299 (+)
cyth3a cyth3a,cyth3,LOC107753449,LOC107669236,LOC107584132,LOC108437157,LOC108258062,LOC107556600 coding upstream 25279 7762989 ~ 7777555 (+)
atad1b atad1,atad1b,LOC107680273,LOC107669218 coding upstream 55048 7742835 ~ 7747786 (+)
rnls rnls,LOC107669231,LOC107584138,LOC107680274,LOC107594162 coding upstream 106105 7663106 ~ 7696729 (+)
ankrd22 ankrd22,LOC107753431,LOC107758445,LOC107584139,LOC107594161 coding upstream 151090 7648181 ~ 7651744 (+)
bhlha15 bhlha15,LOC107669184,LOC107753453,LOC107584229,LOC107594213,LOC107699868 coding downstream 43898 7851508 ~ 7854838 (+)
tmem130 tmem130,LOC107669166 coding downstream 79077 7886687 ~ 7890487 (+)
LOC122355373 trrap,LOC107669193,LOC107699870,LOC107734152 coding downstream 94504 7902114 ~ 7971554 (+)
fam20cb fam20c,fam20cb,LOC107669229,LOC107734234,LOC107699871,LOC105888715,LOC107731385 coding downstream 201770 8009380 ~ 8046039 (+)
foxl3 si:dkey-7e14.3,LOC107731394,LOC107594215,LOC107669190,LOC107734180,LOC107584227,LOC108431962 coding downstream 241966 8049576 ~ 8052386 (+)
G86268 NA non-coding upstream 78973 7720392 ~ 7723861 (+)
G86283 NA non-coding upstream 83551 7718984 ~ 7719283 (+)
G86275 NA non-coding upstream 101035 7701343 ~ 7701799 (+)
G86219 NA non-coding upstream 298335 7502578 ~ 7504499 (+)
G86202 NA non-coding upstream 413853 7387668 ~ 7388981 (+)
G86374 NA non-coding downstream 38948 7846558 ~ 7846862 (+)
G86460 NA non-coding downstream 249321 8056931 ~ 8060176 (+)
G86540 NA non-coding downstream 390484 8198094 ~ 8198410 (+)
G86536 NA non-coding downstream 395973 8203583 ~ 8204143 (+)
LOC122355856 NA non-coding downstream 396535 8204145 ~ 8206748 (+)
G86143 NA other upstream 494605 7307924 ~ 7308229 (+)
G86142 NA other upstream 497986 7303138 ~ 7304848 (+)
G86029 NA other upstream 1280263 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1361308 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 1586267 6214919 ~ 6216567 (+)
LOC122355675 NA other downstream 8213 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 297538 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 388354 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 1028838 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1478053 9285663 ~ 9306831 (+)

Expression


Co-expression Network