LOC122355067 (pgp,LOC107584220,LOC107669208,LOC107734160,LOC107731387,LOC107594223,LOC107699876)


Basic Information

Item Value
gene id LOC122355067
gene name pgp,LOC107584220,LOC107669208,LOC107734160,LOC107731387,LOC107594223,LOC107699876
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8120334 ~ 8122090 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253024.1
ATGTCAAACGATGAATCACTTGCGCAAGGCAGTGTGCCGCTCGGTTGCAGCAACTAGTAATTTCCAGTTTGCTGTCATTCTCTATCATCTGACATAAGCTGATCTCCGTCTAATCAGCGGACTATTCGTAGATAGCTGAAgatcaaatgttattttaggaCGGACCGAGGACAGGCAAAGATCGAGAGCAACCCGAAGAATGGCTTCATCTAAATGCACGCGACTGACTGGAGCGCTGAGCAGAAACTTACTGGACTCGGTGGACAGTGTGCTGTTTGACTGCGATGGTGTAATATGGAGAGGGGACCAAGCCATTCCCGGAGCCCCTGAGGTTATCAATTCATTGAAGAAAAACGGAAAACGGGTGTTTTTTATAACAAACAACAGCACGAAAACCCGACAAATGTACGCGGATAAGTTGGGAAAGCTCGGTTTCGATGCCTCCGCGGACGAGGTGTTCGGGACCGCGTACTGCTCGGCGGTGTACCTCAAAAACGTGTGTAAACTTGACGGAAAAGTGTATTTAATTGGGAGCAATGCGATGAGGCAGGAGCTCGAGGACGTGGGTATCCGGCCGCTCGGTGTGGGGCCTGACCCCATCTCGGGAGTTCAGAAAGACTGGGCTAACGTTCCTCTCGATAATGAGGTCCGAGCTGTACTGGTCGGCTTTGATGAGCATTTCAGTTACATGAAGCTCAACAGAGCTCTGCAGTACCTGTGTAACCCCGACTGTCAGTTCGTGGGAACTAACACGGACACGAGGCTGCCTCTGGAGGGAGGCAAAGCGGTCCCGGGGACCGGGTGCCTCCTCAGGGCGGTAGAGACCGCTGCGCAGCGCCAAGCTCAGGTGGTCGGAAAGCCCAGCGACTTCATGTTCGAGTGTGTGGCCAGTCAGTTCGGTCTGGACCCCGACAGGTGCCTGATGGTCGGAGATAGGCTGGACACGGACATCATGCTAGGCTCAAACTGCGGCCTGAAGACCCTGCTGACCCTCACGGGAGTTTCTACAGTAGCAGAAGCTGAGGCAAACCAGAAGAGCGAATGTCCGCAACGGCAGAAAATGGTGCCTGACTACTATATAGAGAGCATTGCTGACATTTTACCTGCACTACAAGCATAGTTTACCCACTTTAATAGAGAATATTTATCAATATATggtattgatattttaatattacagttcATCTAAATAGGGTTAACAGAAACTGTTTGTCTCTACAAGTATATGCAGTATGATTTACTATGTCATCAAGGCTTCATTTAAAACTGGCCtacctcttttttttaaatatcccattgtgtttgttttaatataatataagggcaatacatttttattttaatgttgacgtttgttttattttgtctcaaaaaaaaaaaaaaaattttctggTCAGTAACATTCGGGTGCTACAAAACAAGTGACCCTCTAAATTGTGccgtttgtttttatttcatcagaaGTACTTGTTCAATTCTGTACTGTTAATTCACTGTACTTTTAATATAATGTGTGAGagaatattatgaatatttttaattattatattttgcactTGACAGCTTTGTCACTCGCTGACTAACCCATAAACCTGGTAGGATTTCACCATGGTTTGAACAAAGTGTTCATTTTGCTAaatggatcaaataaataagaaattgttAATGAAAA

Function

symbol description
pgp Predicted to enable glycerol-3-phosphatase activity. Predicted to be active in cytoplasm. Is expressed in adaxial cell; otic placode; and somite. Orthologous to human PGP (phosphoglycolate phosphatase).

NR:

description
PREDICTED: phosphoglycolate phosphatase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016791 phosphatase activity molecular_function

KEGG:

id description
K19269 PGP, PGLP; phosphoglycolate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253024.1 True 1672 mRNA 0.45 2 8120334 8122090

Neighbor

gene id symbol gene type direction distance location
bricd5 bricd5,LOC107734175,LOC107731433,LOC107669210,LOC107699874 coding downstream 524 8115390 ~ 8119810 (-)
tex2l LOC107584119,LOC107669235,LOC107734227 coding downstream 18436 8089481 ~ 8101898 (-)
atpaf2 atpaf2,LOC107669201,LOC107584123,LOC107734207,LOC107594216,LOC107699854 coding downstream 48696 8069332 ~ 8071638 (-)
tom1l2 tom1l2,LOC107734205,LOC107669200,LOC107584121 coding downstream 51274 8056927 ~ 8069060 (-)
nptx2b nptx2,nptx2b,LOC107734170,LOC107669183,LOC107594214,LOC108431963 coding downstream 222670 7892785 ~ 7897664 (-)
zdhhc4 zdhhc4,LOC107734165,LOC107669203,LOC107584218,LOC107594224,LOC107699875,LOC107731390 coding upstream 3993 8126083 ~ 8129019 (-)
arhgap17a arhgap17a,arhgap17,LOC107594184,LOC107731407,LOC107669196,LOC107584117,LOC107699879,LOC107734204 coding upstream 33143 8155233 ~ 8179107 (-)
hbae5 LOC107734189,LOC107594227,LOC107692106,LOC107674601,LOC107596827 coding upstream 72133 8194223 ~ 8195216 (-)
zgc:163057 zgc:163057,LOC107584216,LOC107734190,LOC107692104,LOC107669180,LOC107594186 coding upstream 81484 8203574 ~ 8205720 (-)
foxj1b foxj1b,LOC107584215,LOC107734171,LOC107669185,LOC107692083,LOC107731389,LOC107554021 coding upstream 141020 8263110 ~ 8266628 (-)
G86516 NA non-coding downstream 7621 8111193 ~ 8112713 (-)
G86458 NA non-coding downstream 65303 8054768 ~ 8055031 (-)
G86413 NA non-coding downstream 229113 7890303 ~ 7891221 (-)
G86412 NA non-coding downstream 232088 7887966 ~ 7888246 (-)
G86375 NA non-coding downstream 273502 7846481 ~ 7846832 (-)
G86513 NA non-coding upstream 26657 8148747 ~ 8154173 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding upstream 65551 8187641 ~ 8190285 (-)
G86553 NA non-coding upstream 76828 8198918 ~ 8199124 (-)
G86576 NA non-coding upstream 167990 8290080 ~ 8290410 (-)
G86606 NA non-coding upstream 217366 8339456 ~ 8339815 (-)
G86203 NA other downstream 731424 7388236 ~ 7388910 (-)
G86108 NA other downstream 1016116 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1449087 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 2042266 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 2108223 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 212314 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 389313 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 488462 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 560353 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 565408 8687498 ~ 8687570 (-)

Expression


Co-expression Network