fam117ab (LOC107569178,LOC107684758,LOC107745685,LOC107694066,LOC107753317)


Basic Information

Item Value
gene id fam117ab
gene name LOC107569178,LOC107684758,LOC107745685,LOC107694066,LOC107753317
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 4267987 ~ 4274965 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253031.1
aaaatgaatgaaagataCGACACAGAGGAAGAGTTGAATAGTGTTACTCGGTGTTGAGAAGCAAATTCTCTCAAGTTTATAACCTCATACTCGAACGCGATTAAACGGGTATATCTTATAGTTATCGGACTAGTTAAGAAACTGGACGGTAAGCATTTAGAATGGATACATAGCTGGATATGGACAACTGAAGAAGCACAAAAACTGCTCATGCCGCCAGAGTGAGTGCCTACTGTGGAGAGATGAAGAAGTCCAGGAGCGGATCAGGTCTCCAGCCTCTCAAAGCTACCGTTCCCTTCACGCTGCACAAACCAGCTGGAGCTGCCGTCACAAATATCGCTCCAGGTGAAAAAACCAAATCAGAGTGGCGTTTGCAGACTCCGACTCAACACACCGTATCTTTGGATGCAGTTGTGCGGCCATACTTACAAGGCCAGTGGCCCAAAGTGGATGACAGACATGGCAGGGAAGACAAATCCACACAGacaCCACACGCGTGGTTAGCTGGAGCTGAAACAACAGCTGTTGGATTTCACAAGCGTTCGGCATCATGGGGAAATTCAGAATGTCTCCAGGATGGAAGTGACGTGTTTGCAGATTCATCTGTTTTCAAGCTGAAACAACTGCAGCAGAAGAAAAGGTCAGGTGTTCTGGTTGGCAATCAAGGGAAACTGCACAACCAACATCAGTCCCCTGCTCTGTTAATCCCATCTGCATCATTGACTCGACTGCCGTCACGTTTACGTCAAAGTGAAGAGAGACTAGATCAGGagctggagaaagtttttacaCATCATTCAACAGTTCACCACTGTGGActATACGAGGTCCCTGATGGACATAGGGCTCCTGTTGCGCACCTGAGCTCCAAGAGTGGATTTCAGATTGGGTCTTCCTGTGTCGCTTCAcactcttcctcttcctcttccaaGTCTTGCTCTCCACAGCGCCCTCTAGAGTTCGAAACTTTTGAAGAAGTGAACTCGTGTATTGTGATGCTGTCCTCATCACCGCGGCCCAATAACACCTACTGCTTTCAGAGGGATCCTCCAGAGGGTTGTGAGAGAGTCCGAGTGTGTGAAGAGAATGTCTTTCCATGTTTGGACCAAGTGCACGCGTCCTCCTGTCCTGACCCCAACAAAGTGAACTtcaccacacacacaggctCGGCCTTCTGTCCCGTCAATCTCCCGAAGCCCCTCCTACCTCCGGGGGACTTCCTGATCTGCAGCCTCTCGGGGTCCTGCTGGGTGGGACAGTGATGAGTTGATAACAAAAGAAGATCCGGTGAAATCAGCATCAGTGACTTAATGCTGATTCTGCTTCAGCGTCTGACCttactattaaaaattattttttcattgctGAAGAGTGgatattgtaaaatgtactttatcaTTTGAAAAGTTACTATAATAACAGAATACCGCATTTCTTTGTGGCTCAGTAAGTGTAGTGAAAATATCCAGCTggaatatttgattaaatttatggtttaatgcatttaagacattttttttaaatataaaattgaatgGTACTATTAAGgcaatgaatgtattttaaatcagcttttaCCACCCCAAAAAATAGATAggcaaatgtattatttttttaacgtgTACTTTAGTTTTCAGTTTTGATATAGAAAAGTATATTGAAGAAAGTATGCGGGTGGATTATTACAGTTATAGACTATTTAAGTAGGTATATTCccgttctcttttttttctctccctatAGTAGGGTGCTTTTTGTCAAATGAATGTTTACATGATATACCTTGAACATATgaatactatttttatatttgtaagatTAGTTAAGTCTGTATTGTTTGCACATATATTTTGCTAAAGATAAGCTATAGAATGTAAATGGTGACGTCTGACTTCAATGTATTTCTTCGTTCAATATGTTAATTGCGCACATGATGTTGGTTGTTATTTTAAGCTTTGGTTGAAATGCTTGTTCAGTTGAGTTAGCGAAATACCTGCCTTCCCGTTGGAAAGTACACAGGGAAACTACGTGCACGTCGAcgatacattttgttttgttcttttctttctatataTCACTTAAATTGGTCCATTTCTGTCTTTTGACAACAATAAAGTAGAATTGAGCAAAAATAG

Function

NR:

description
PREDICTED: protein FAM117A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253031.1 True 2135 mRNA 0.42 8 4267987 4274965

Neighbor

gene id symbol gene type direction distance location
rundc3ab rundc3ab,LOC107569197,LOC107694077,LOC107684757,LOC107753318 coding upstream 2181 4254314 ~ 4265806 (+)
pth3r pth1rb,LOC107753328,LOC107694067,LOC107569183,LOC107684783,LOC107751715,LOC107560533 coding upstream 16921 4238766 ~ 4251066 (+)
erbb2 erbb2,LOC107684762,LOC107751707,LOC107753308,LOC107560555,LOC107573419,LOC107694064 coding upstream 48595 4192254 ~ 4219392 (+)
pgap3 pgap3,LOC107694083,LOC107684764 coding upstream 82529 4176537 ~ 4185458 (+)
si:ch211-207i20.2 si:ch211-207i20.2,LOC107694079,LOC107753309,LOC107560552 coding upstream 92431 4171114 ~ 4175556 (+)
LOC122355776 grid1b,grid1,LOC106578986 coding downstream 426819 4701784 ~ 4827583 (+)
LOC122355390 grid1b,grid1,LOC107551832,LOC106589364,LOC106578986 coding downstream 909053 5184018 ~ 5237596 (+)
patl2 LOC107653257,LOC107716475,LOC107551853,LOC107674477,LOC107727969 coding downstream 1057215 5332180 ~ 5337922 (+)
cmn NA coding downstream 1066138 5341103 ~ 5355542 (+)
paqr4b paqr4b,LOC107716446,LOC107653249,LOC107727949,LOC107674534,LOC107576563,LOC107551829 coding downstream 1081389 5356354 ~ 5359854 (+)
G85477 NA non-coding upstream 38453 4228755 ~ 4229534 (+)
G85444 NA non-coding upstream 268508 3992786 ~ 3999479 (+)
G85332 NA non-coding upstream 479119 3761302 ~ 3788868 (+)
G85248 LOC107581964,LOC107732308,LOC107692781,LOC107697371,LOC107587198,LOC107707128 non-coding upstream 1396239 2869163 ~ 2871748 (+)
G85215 NA non-coding upstream 1587670 2680044 ~ 2680317 (+)
G85550 NA non-coding downstream 36502 4311467 ~ 4311944 (+)
G85552 NA non-coding downstream 37614 4312579 ~ 4313030 (+)
LOC122355394 NA non-coding downstream 867935 5142900 ~ 5144378 (+)
LOC122355395 NA non-coding downstream 879689 5154654 ~ 5157732 (+)
G85661 NA non-coding downstream 1122598 5397563 ~ 5402712 (+)
btbd16 btbd16,LOC107660483,LOC107716451,LOC107598041 other upstream 1000148 3254718 ~ 3267839 (+)
LOC122355768 waplb,wapl,LOC107598042,LOC107660482,LOC107716480,LOC107745560,LOC107678383,LOC107571690,LOC105006405 other upstream 1056635 3174189 ~ 3211352 (+)
LOC122355426 rhobtb1,LOC107654062,LOC107727061,LOC107695540,LOC107552568,LOC107746840,LOC107718339,LOC107680668,LOC107676653 other upstream 1447374 2801612 ~ 2820613 (+)
LOC122355862 ank3a,LOC107663296,LOC107733536,LOC107717054,LOC107654059,LOC107727055,LOC107746453,LOC107695539 other upstream 1484017 2715640 ~ 2783970 (+)
G84866 ank3,LOC107746453,LOC107654059 other upstream 2435996 1820519 ~ 1831991 (+)
ndufa4b ndufa4,ndua4,LOC107745684,LOC107569184,LOC107684782,LOC103023526,LOC108443163 other downstream 375 4275340 ~ 4277385 (+)
LOC122355090 ebf4,ebf3,LOC107750882,LOC107668586,LOC107671096 other downstream 124631 4399596 ~ 4408405 (+)
LOC122355720 gnrh2,LOC107750862,LOC107671109 other downstream 143282 4418247 ~ 4419213 (+)
G85567 NA other downstream 177890 4452855 ~ 4453275 (+)
LOC122355392 pnmt,LOC107571312,LOC107676565 other downstream 806200 5081165 ~ 5109046 (+)

Expression


Co-expression Network