etv4 (etv4,LOC107552771,LOC107706904)


Basic Information

Item Value
gene id etv4
gene name etv4,LOC107552771,LOC107706904
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12080097 ~ 12102703 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253032.1
GggagaggagtgtgtgtttatacgcACGCTGgtggttttttttgtgaatggaGCTCATTACGTATGCAGCCTTCTCGCGCTCCATTCACAAACTACTGCTGCTGCCTCCGTCCGTCTTCCTTCCCCTCTCAGTCTGCGTGGATCTCATTAAAACACAGCCTAAATGACCACAAACGGTTAAGGCATGGATTATAAGATGGATGGATATCTGGACCAGCAAGTGCCTTATACTTTAGCTAACAGGTCGCAAGGAAATGGGCCCCTAAATAGACTGTTGATGGCGACAAAAAGGAAATACATGGACACCGAATTACCCCCTCAGGAATCTGAAGATCTCTTTCAGGATTTAAGCCAACTTCAGGAGACATGGCTCACCGAAGCTCAAGTTCCTGACAGCGATGAGCAGTTTGTTCCTGACTTCCACTCAGAGAACTCAGTGGCATTCCACAGCCCGCCTGTGAAGATTAAGAAAGAGCCTCAGAGTCCCGGCTCAGACCCCAGCCAGTCTTGCAGTCACAAGCAGAGCTTCAGCTACCCCAATGGAGAGCAGTGCCTTTACGCCAGTGCCTACGAGCAGAAGAGAGCAGCCGTGGCAGCAACAGCAGGAGGATCTAAGAGCTCTTGTCCCGGGACACCCATGTCTCCTATGCAGCATTACTCCCCAAAACCAACAGTGGGAACTCGGCCGGAGTCAGGGTACATGAATACACCCTCAGCCAGCCAGTCCCATGCTTGCCACAGCCACAGTTACTCCATGAACCCCAgTTCCAGGTTCCCTTCCGCCTCTGCAGAGATGTGCCCACCATTCGCTTCCCAAGGCCAGGCCCTACAGCGCATGCATCCTGCCCATGCCACCGGAGGCGGAGGCGGTGGTTACCATCGGCAACACTCTGACCCCTGTCTGCCTTATCCTCCTCAGCAGAACTTCAAGCAGGAGTACATGGACCCTCTGTACGACCGAGCGGCCCACATGGCCGGGCCACAGCATCAGAGGTTTCCTCCTGCCCATATGATGGTGAAACAGGAACCCACTGACTACACATATGAACCTGATGTGCCTGGTTGCCCCTCCATGTATCATCACAACGAGGGCTACCCCAACCCACAGCACAACAGTGAAGGTtacatgtttgaaaatgattccCGTGTTGTTCCTGAGAAATTTGAAGGTGAGGTGAAGCAGGAAGGGGGCGGTGTGTTTCGCGAGGGCGCCCCCTATCAGCGCCGTGGCTCACTGCAGCTCTGGCAGTTTTTGGTGGCCCTTCTCGACGACCCCGGCAATGCGCACTTCATCGCGTGGACCGGCCGTGGCATGGAGTTCAAACTCATCGAGCCAGAGGAGGTGGCAAGACTCTGGGGGATGCAGAAGAACCGTCCAGCCATGAATTACGACAAACTGAGTCGTTCTTTGCGCTACTATTACGAGAAGGGAATTATGCAAAAGgTGGCGGGTGAGCGTTATGTTTACAAATTCGTGTGTGAGCCAGAGGCTCTGATATCTTTGGCTTTTCCTGACAATCAGCGGCCAAGTCTGAAGGCAGAATTTGAACGCTACGTCAACGAGGAGGACACGGTGCCGCTGTCTCACCTCGATGAGGGGGCTTCTTACCCTCCCGAACCAGCTGCCACCAACATGGGTCCTCAGTCCTACTCCAAAGGCTACATGTACTAACGCCACCAACATTTTCCCATGTTCCCCATCCCAGTTTACTCCCCGCTGCACCTATTGCACATGCCCACCCCATCCACTTGTATATAAGgctatgttgttgttttttttttttttttttgttgattaaatTAATCTCATTAGGGACTCTGCATTCCTCTCACTTCCGAGGCCTATCTAATCTAAACACAGTACTGTGGTTCAAGAGATTGCTTAATAAAGACCCAATATTACTACTATA
>XM_043253033.1
CGGggagaggagtgtgtgtttatacgcACGCTGgtggttttttttgtgaatggaGCTCATTACGTATGCAGCCTTCTCGCGCTCCATTCACAAACTACTGCTGCTGCCTCCGTCCGTCTTCCTTCCCCTCTCAGTCTGCGTGGATCTCATTAAAACACAGCCTAAATGACCACAAACGGTTAAGGCATGGATTATAAGATGGATGGATATCTGGACCAGCAAGTGCCTTATACTTTAGCTAACAGGTCGCAAGGAAATGGGCCCCTAAATAGACTGTTGATGGCGACAAAAAGGAAATACATGGACACCGAATTACCCCCTCAGGAATCTGAAGATCTCTTTCAGGATTTAAGCCAACTTCAGGAGACATGGCTCACCGAAGCTCAAGTTCCTGACAGCGATGAGCAGTTTGTTCCTGACTTCCACTCAGAGAACTTGGCATTCCACAGCCCGCCTGTGAAGATTAAGAAAGAGCCTCAGAGTCCCGGCTCAGACCCCAGCCAGTCTTGCAGTCACAAGCAGAGCTTCAGCTACCCCAATGGAGAGCAGTGCCTTTACGCCAGTGCCTACGAGCAGAAGAGAGCAGCCGTGGCAGCAACAGCAGGAGGATCTAAGAGCTCTTGTCCCGGGACACCCATGTCTCCTATGCAGCATTACTCCCCAAAACCAACAGTGGGAACTCGGCCGGAGTCAGGGTACATGAATACACCCTCAGCCAGCCAGTCCCATGCTTGCCACAGCCACAGTTACTCCATGAACCCCAgTTCCAGGTTCCCTTCCGCCTCTGCAGAGATGTGCCCACCATTCGCTTCCCAAGGCCAGGCCCTACAGCGCATGCATCCTGCCCATGCCACCGGAGGCGGAGGCGGTGGTTACCATCGGCAACACTCTGACCCCTGTCTGCCTTATCCTCCTCAGCAGAACTTCAAGCAGGAGTACATGGACCCTCTGTACGACCGAGCGGCCCACATGGCCGGGCCACAGCATCAGAGGTTTCCTCCTGCCCATATGATGGTGAAACAGGAACCCACTGACTACACATATGAACCTGATGTGCCTGGTTGCCCCTCCATGTATCATCACAACGAGGGCTACCCCAACCCACAGCACAACAGTGAAGGTtacatgtttgaaaatgattccCGTGTTGTTCCTGAGAAATTTGAAGGTGAGGTGAAGCAGGAAGGGGGCGGTGTGTTTCGCGAGGGCGCCCCCTATCAGCGCCGTGGCTCACTGCAGCTCTGGCAGTTTTTGGTGGCCCTTCTCGACGACCCCGGCAATGCGCACTTCATCGCGTGGACCGGCCGTGGCATGGAGTTCAAACTCATCGAGCCAGAGGAGGTGGCAAGACTCTGGGGGATGCAGAAGAACCGTCCAGCCATGAATTACGACAAACTGAGTCGTTCTTTGCGCTACTATTACGAGAAGGGAATTATGCAAAAGgTGGCGGGTGAGCGTTATGTTTACAAATTCGTGTGTGAGCCAGAGGCTCTGATATCTTTGGCTTTTCCTGACAATCAGCGGCCAAGTCTGAAGGCAGAATTTGAACGCTACGTCAACGAGGAGGACACGGTGCCGCTGTCTCACCTCGATGAGGGGGCTTCTTACCCTCCCGAACCAGCTGCCACCAACATGGGTCCTCAGTCCTACTCCAAAGGCTACATGTACTAACGCCACCAACATTTTCCCATGTTCCCCATCCCAGTTTACTCCCCGCTGCACCTATTGCACATGCCCACCCCATCCACTTGTATATAAGgctatgttgttgttttttttttttttttttgttgattaaatTAATCTCATTAGGGACTCTGCATTCCTCTCACTTCCGAGGCCTATCTAATCTAAACACAGTACTGTGGTTCAAGAGATTGCTTAATAAAGACCCAATATTACTACTATA
>XM_043253034.1
GTCGTCGTTGCATGTGATTTGTTTTAAGCAAGCGCCGCCGCGCCGAAAACTCTTCTCGGTTTGGGCAGAAACCCGAGTAAAACTGTCGCAACCGGTCTACTAAATATTCGTTATTCGTAATATGCTCCATGTGTTGGACGTTGCGCTCAAAAGAGGTCGCAAGGAAATGGGCCCCTAAATAGACTGTTGATGGCGACAAAAAGGAAATACATGGACACCGAATTACCCCCTCAGGAATCTGAAGATCTCTTTCAGGATTTAAGCCAACTTCAGGAGACATGGCTCACCGAAGCTCAAGTTCCTGACAGCGATGAGCAGTTTGTTCCTGACTTCCACTCAGAGAACTCAGTGGCATTCCACAGCCCGCCTGTGAAGATTAAGAAAGAGCCTCAGAGTCCCGGCTCAGACCCCAGCCAGTCTTGCAGTCACAAGCAGAGCTTCAGCTACCCCAATGGAGAGCAGTGCCTTTACGCCAGTGCCTACGAGCAGAAGAGAGCAGCCGTGGCAGCAACAGCAGGAGGATCTAAGAGCTCTTGTCCCGGGACACCCATGTCTCCTATGCAGCATTACTCCCCAAAACCAACAGTGGGAACTCGGCCGGAGTCAGGGTACATGAATACACCCTCAGCCAGCCAGTCCCATGCTTGCCACAGCCACAGTTACTCCATGAACCCCAgTTCCAGGTTCCCTTCCGCCTCTGCAGAGATGTGCCCACCATTCGCTTCCCAAGGCCAGGCCCTACAGCGCATGCATCCTGCCCATGCCACCGGAGGCGGAGGCGGTGGTTACCATCGGCAACACTCTGACCCCTGTCTGCCTTATCCTCCTCAGCAGAACTTCAAGCAGGAGTACATGGACCCTCTGTACGACCGAGCGGCCCACATGGCCGGGCCACAGCATCAGAGGTTTCCTCCTGCCCATATGATGGTGAAACAGGAACCCACTGACTACACATATGAACCTGATGTGCCTGGTTGCCCCTCCATGTATCATCACAACGAGGGCTACCCCAACCCACAGCACAACAGTGAAGGTtacatgtttgaaaatgattccCGTGTTGTTCCTGAGAAATTTGAAGGTGAGGTGAAGCAGGAAGGGGGCGGTGTGTTTCGCGAGGGCGCCCCCTATCAGCGCCGTGGCTCACTGCAGCTCTGGCAGTTTTTGGTGGCCCTTCTCGACGACCCCGGCAATGCGCACTTCATCGCGTGGACCGGCCGTGGCATGGAGTTCAAACTCATCGAGCCAGAGGAGGTGGCAAGACTCTGGGGGATGCAGAAGAACCGTCCAGCCATGAATTACGACAAACTGAGTCGTTCTTTGCGCTACTATTACGAGAAGGGAATTATGCAAAAGgTGGCGGGTGAGCGTTATGTTTACAAATTCGTGTGTGAGCCAGAGGCTCTGATATCTTTGGCTTTTCCTGACAATCAGCGGCCAAGTCTGAAGGCAGAATTTGAACGCTACGTCAACGAGGAGGACACGGTGCCGCTGTCTCACCTCGATGAGGGGGCTTCTTACCCTCCCGAACCAGCTGCCACCAACATGGGTCCTCAGTCCTACTCCAAAGGCTACATGTACTAACGCCACCAACATTTTCCCATGTTCCCCATCCCAGTTTACTCCCCGCTGCACCTATTGCACATGCCCACCCCATCCACTTGTATATAAGgctatgttgttgttttttttttttttttttgttgattaaatTAATCTCATTAGGGACTCTGCATTCCTCTCACTTCCGAGGCCTATCTAATCTAAACACAGTACTGTGGTTCAAGAGATTGCTTAATAAAGACCCAATATTACTACTATA

Function

symbol description
etv4 Enables sequence-specific DNA binding activity. Involved in positive regulation of transcription, DNA-templated. Acts upstream of or within limb morphogenesis and pronephric nephron tubule epithelial cell differentiation. Predicted to be active in nucleus. Is expressed in several structures, including fin; head; mesoderm; nervous system; and neural keel. Orthologous to human ETV4 (ETS variant transcription factor 4).

NR:

description
PREDICTED: ETS translocation variant 4

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0035108 limb morphogenesis biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15592 ETV4; ets translocation variant 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253032.1 True 1910 mRNA 0.52 12 12080099 12102703
XM_043253033.1 False 1909 mRNA 0.52 12 12080097 12102703
XM_043253034.1 False 1822 mRNA 0.52 12 12080407 12102703

Neighbor

gene id symbol gene type direction distance location
meox1 meox1,LOC107706874,LOC107669480,LOC107666908,LOC107743797 coding upstream 29094 12045523 ~ 12051003 (+)
sost LOC107552770,LOC107706903,LOC107582741,LOC107743777 coding upstream 86469 11989281 ~ 11993628 (+)
dusp3a dusp3a,dusp3,LOC107669488,LOC107552769,LOC107666929,LOC107582744 coding upstream 98103 11971695 ~ 11981994 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107582746,LOC107727318 coding upstream 126114 11951851 ~ 11953983 (+)
tmem106a LOC107706900,LOC107552767,LOC107669487,LOC107666933,LOC107727317 coding upstream 130465 11946071 ~ 11949632 (+)
spata20 spata20 coding downstream 10554 12113257 ~ 12147867 (+)
cacna1g cacna1g,LOC107754113,LOC107552774 coding downstream 62886 12165589 ~ 12352484 (+)
LOC122355068 uts2r,LOC107552777,LOC107754100,LOC107689263,LOC107577513,LOC107743796,LOC107691210 coding downstream 269725 12372428 ~ 12402861 (+)
LOC122355615 LOC107754112,LOC107689267,LOC107743783,LOC107566616,LOC107691214,LOC107568947 coding downstream 349291 12451994 ~ 12457855 (+)
cdk5r1b cdk5r1b,cdk5r1,LOC107568950,LOC107565647,LOC107754098,LOC107675021,LOC107691215,LOC108426451 coding downstream 379349 12482052 ~ 12487183 (+)
G87621 NA non-coding upstream 12468 12067403 ~ 12067629 (+)
G87617 NA non-coding upstream 82585 11997290 ~ 11997512 (+)
G87337 chmp2a,LOC106589279 non-coding upstream 256775 11822063 ~ 11823322 (+)
G87343 NA non-coding upstream 276470 11803287 ~ 11803627 (+)
G87341 NA non-coding upstream 279470 11800356 ~ 11800627 (+)
G87644 NA non-coding downstream 46720 12149423 ~ 12149637 (+)
LOC122355133 NA non-coding downstream 48449 12151152 ~ 12156922 (+)
G87664 NA non-coding downstream 54883 12157586 ~ 12157815 (+)
G87665 NA non-coding downstream 55543 12158246 ~ 12158508 (+)
G87669 NA non-coding downstream 137080 12239783 ~ 12240201 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 134462 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 196000 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 378442 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1497552 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1580399 10497425 ~ 10499698 (+)
G87817 NA other downstream 630061 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 657671 12760374 ~ 12762731 (+)
G88016 NA other downstream 1339240 13441943 ~ 13444915 (+)
G88082 NA other downstream 1493091 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 1752992 13855695 ~ 13864743 (+)

Expression


Co-expression Network