LOC122355076 (LOC107566710,LOC107684141,LOC107581554)


Basic Information

Item Value
gene id LOC122355076
gene name LOC107566710,LOC107684141,LOC107581554
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13418717 ~ 13422958 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253053.1
ACATTTTTCAATTGCAGCTTAATTCATGCGCTTCTAAAAGTTACATTTGTCTTTATTGTATCAAGTTTACCGCAATACCACAACACCGTGAACACATTTGACTGGTTGTTTCCACAAATAACAGACAAAGTCAAAAGGGAGGGAGCCTGAACCTGAGCTTACATATAACCAGAAACTCCTCCTGTTACCAGCATGTTTTGGAAGAGACAAAAAGCCTCTAGCTTCCTACTAAACTGCCATCACAACAGAGACCTTGTGAGAGCTGAAATACTTTTGACGGTGACACAAGATATATCAGTGGTTTACAGCAAAACAACGTGAAGATTTTACATCtattttagaattaaacaaCAGCATCAGGATGTCCAACAGCAAAAAGAAACCAACAGCAGCTTCAACATTTTACAATGAACCAGTGATGGTGGAGGAACTGTACACTGGATATCTGCTCAAGTCCCCGGCTCAATCAGCCCTGACCAAAAACACGCTGTCACAGATATCATGGAAGCGTCGTTTTTTTGTGCTCTCCAAGACGATTGAAGACTCCTACCAGCTGACATACCATGTAAACAACGAAAGGAGAGACAAGCCTTTGGGAGAGATAGACATTTCTAAGATCAGCCTGCTGTTCACTGGCCCTGAGACACATCAGAAGTGGGACTGGATCCAGAAAAACTTCAAGTGCTCTCCATCCTCTGTGCTGTTCTTGAAGGTGGAAGACGACACAATAAAACACTCGAGAGAATATTTCCTCATTGGAGAAAACAGTGCTGATGTGGAGGGTTGGCTCAGTGCCTTAGTCAAGGTAATAAAGACCCAGAAATCAAGAAATACCCTTCAGGAAAACAGATTTCGATCAGCATCTGAACCTGTTCAGAATCCAGAAGAAAAAGCTGAGGATGAGTCTGATGACAGACGGTCAGCGCCTGAATTGATGCTAACTTACCCGTCACCATACAGCCATTATGACTATCCTCGCAAGCTCAGTGAACCTCCACTACCAGTAGAGCTAAAgGTTGATGAGGATGAATATGATGAGGATGAGATGCAGGATGAATCTGCAGAAGACAATGAATACATGCCCATGGCATCATTGCAAAGAGCATTGGGAGTTGACAAACAAGAGACAGACATTACATGCAAGCAGAAAAAcGCTTCCATTAATGGTCACAAGTCCTCTGTGTGCAGTGGTGCAATCGAtcaggatgaggatgatgactGTAATTGGAAAATGCACGTACATGTTGAGAAGGAGATCTGCGTTAGtcaaaatgatctaaaaaataGTCTCATTTTGACTCAGGCAGAAGGCAAACCATGTGTCTCTGACTGTCGGATGCTTCAGGACTCGTGTCTCTTTCATAAGGGGGATCAGATCCTTGCCTTCAATGACCTGCTTATAGACACAGTAGAAGAGATTCAGACATATGTAAGAAGACTAAGCAAGGATGAGGTAAAACTCACTATTCGGCGGCTCATAGGATCTCAGCCTCTGCACAGCGAACCCTGCCTTTCATAATGAAGACAAATCTCATGTGAATTCATCAACATcaagatattagaaaaaattaaagattaaagctTATTCGTTTGAGTCTAATCCTACAGGTTGAAAACAAGGTGTTAATGAATAGAAGAGAATTCAGGTTATCTAAAACAACTTGTCCTCTTTTGACTGTATATTATTCATGCAAATATGTAAAGCAAGGTTAGATTTTCTGATCTTAAAATGCTACTTggtgaaaaaaatctgtaagATTTAGACTATGTTATGCGACTGGCAGTGGGTTTATTAGTTCACATCTGTTAATGTGAAGAACAAGGAtcaaatattactttataataagTAGAATGGTtagttcacattaaaaaaaatgcatagttcAAAACGGTTTATGTATTTTTCCCTCTTTAAAGATGCACTTTTTTACAATCCTAACAGTATGAGGTACtttatatattgtgaaatatacaaattttctgtaattgtgtattttgttttgcaaagcATTTAACCAATGATACTGCTCCTAGTCATTATGATTCAAATGTTTCAGTCACTGTTTAGATCGATGTTTACCGAATAACATGTATCCTATTTAACATATACATGAATCACGCTGTACAAAAGCAtgtatttgcactttttttacaatatgaagtattattaaacttaaaaatattgcaa
>XM_043253054.1
TGATTCTTGTAACACGTGAAATAATGCAGATGCTATTTTTTATAAAGACATCATGTACTTTTATTATATGACATTATATTATTGAGGGTtaattttcattgcattttaattgttcTTGTGCTGacgttgcattttttttctcttttactaAATTCTAAATTACTGTGGTCTATCAGATATATCAGTGGTTTACAGCAAAACAACGTGAAGATTTTACATCtattttagaattaaacaaCAGCATCAGGATGTCCAACAGCAAAAAGAAACCAACAGCAGCTTCAACATTTTACAATGAACCAGTGATGGTGGAGGAACTGTACACTGGATATCTGCTCAAGTCCCCGGCTCAATCAGCCCTGACCAAAAACACGCTGTCACAGATATCATGGAAGCGTCGTTTTTTTGTGCTCTCCAAGACGATTGAAGACTCCTACCAGCTGACATACCATGTAAACAACGAAAGGAGAGACAAGCCTTTGGGAGAGATAGACATTTCTAAGATCAGCCTGCTGTTCACTGGCCCTGAGACACATCAGAAGTGGGACTGGATCCAGAAAAACTTCAAGTGCTCTCCATCCTCTGTGCTGTTCTTGAAGGTGGAAGACGACACAATAAAACACTCGAGAGAATATTTCCTCATTGGAGAAAACAGTGCTGATGTGGAGGGTTGGCTCAGTGCCTTAGTCAAGGTAATAAAGACCCAGAAATCAAGAAATACCCTTCAGGAAAACAGATTTCGATCAGCATCTGAACCTGTTCAGAATCCAGAAGAAAAAGCTGAGGATGAGTCTGATGACAGACGGTCAGCGCCTGAATTGATGCTAACTTACCCGTCACCATACAGCCATTATGACTATCCTCGCAAGCTCAGTGAACCTCCACTACCAGTAGAGCTAAAgGTTGATGAGGATGAATATGATGAGGATGAGATGCAGGATGAATCTGCAGAAGACAATGAATACATGCCCATGGCATCATTGCAAAGAGCATTGGGAGTTGACAAACAAGAGACAGACATTACATGCAAGCAGAAAAAcGCTTCCATTAATGGTCACAAGTCCTCTGTGTGCAGTGGTGCAATCGAtcaggatgaggatgatgactGTAATTGGAAAATGCACGTACATGTTGAGAAGGAGATCTGCGTTAGtcaaaatgatctaaaaaataGTCTCATTTTGACTCAGGCAGAAGGCAAACCATGTGTCTCTGACTGTCGGATGCTTCAGGACTCGTGTCTCTTTCATAAGGGGGATCAGATCCTTGCCTTCAATGACCTGCTTATAGACACAGTAGAAGAGATTCAGACATATGTAAGAAGACTAAGCAAGGATGAGGTAAAACTCACTATTCGGCGGCTCATAGGATCTCAGCCTCTGCACAGCGAACCCTGCCTTTCATAATGAAGACAAATCTCATGTGAATTCATCAACATcaagatattagaaaaaattaaagattaaagctTATTCGTTTGAGTCTAATCCTACAGGTTGAAAACAAGGTGTTAATGAATAGAAGAGAATTCAGGTTATCTAAAACAACTTGTCCTCTTTTGACTGTATATTATTCATGCAAATATGTAAAGCAAGGTTAGATTTTCTGATCTTAAAATGCTACTTggtgaaaaaaatctgtaagATTTAGACTATGTTATGCGACTGGCAGTGGGTTTATTAGTTCACATCTGTTAATGTGAAGAACAAGGAtcaaatattactttataataagTAGAATGGTtagttcacattaaaaaaaatgcatagttcAAAACGGTTTATGTATTTTTCCCTCTTTAAAGATGCACTTTTTTACAATCCTAACAGTATGAGGTACtttatatattgtgaaatatacaaattttctgtaattgtgtattttgttttgcaaagcATTTAACCAATGATACTGCTCCTAGTCATTATGATTCAAATGTTTCAGTCACTGTTTAGATCGATGTTTACCGAATAACATGTATCCTATTTAACATATACATGAATCACGCTGTACAAAAGCAtgtatttgcactttttttacaatatgaagtattattaaacttaaaaatattgcaa

Function

NR:

description
PREDICTED: pleckstrin homology domain-containing family S member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253053.1 True 2188 mRNA 0.39 13 13418717 13422958
XM_043253054.1 False 2075 mRNA 0.37 12 13418717 13422624

Neighbor

gene id symbol gene type direction distance location
LOC122355682 NA coding downstream 461 13414181 ~ 13418256 (-)
plekhs1.1 LOC107566815,LOC107755416,LOC107702419 coding downstream 8436 13405793 ~ 13410281 (-)
nhlrc2 nhlrc2,LOC107755539,LOC107708141,LOC107702418,LOC107684116 coding downstream 20330 13381644 ~ 13398387 (-)
adrb1 adrb1,LOC107755541,LOC107566002,LOC107702449,LOC107689959,LOC107581665 coding downstream 43229 13372489 ~ 13375488 (-)
tdrd1 LOC107702448,LOC107755540,LOC107566104,LOC107581549,LOC107708149,LOC107689961 coding downstream 83925 13325153 ~ 13334792 (-)
casp7 casp7,LOC107707870,LOC107684033,LOC107581558,LOC107566160 coding upstream 13949 13436907 ~ 13444732 (-)
crygmx crygmx,LOC107755411,LOC107566847,LOC107684144,LOC107581668 coding upstream 130598 13553556 ~ 13555025 (-)
crygmxl2 crygmxl2,LOC107566855,LOC107708427,LOC107702435,LOC107581669,LOC107684145 coding upstream 132735 13555693 ~ 13557090 (-)
vti1a vti1a,LOC107702459,LOC106589328,LOC107566351 coding upstream 296713 13719671 ~ 13839456 (-)
acsl5 acsl5,LOC107702457,LOC107566323,LOC107722228,LOC107755526,LOC107581566,LOC107684041 coding upstream 423215 13846173 ~ 13854773 (-)
G88003 NA non-coding downstream 50397 13365953 ~ 13368320 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding downstream 611071 12804696 ~ 12807646 (-)
LOC122355629 NA non-coding downstream 779981 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 931322 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 1071651 12344898 ~ 12347066 (-)
G88019 NA non-coding upstream 10936 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 35498 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 37187 13460145 ~ 13461245 (-)
LOC122355666 NA non-coding upstream 286097 13709055 ~ 13712541 (-)
G88146 NA non-coding upstream 401642 13824600 ~ 13894358 (-)
G87845 LOC107675011 other downstream 666039 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 743245 12649383 ~ 12675472 (-)
G87608 NA other downstream 1467562 11948540 ~ 11951155 (-)
G87569 NA other downstream 1583105 11832879 ~ 11835612 (-)
G87489 NA other downstream 2096114 11321423 ~ 11322603 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 1350 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 100710 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 186462 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 549924 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 725089 14148047 ~ 14150005 (-)

Expression


Co-expression Network