cdk5rap3 (cdk5rap3,LOC107754106)


Basic Information

Item Value
gene id cdk5rap3
gene name cdk5rap3,LOC107754106
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12677700 ~ 12683617 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253058.1
TGTCGAGTGTGCCGATTGGTCAGTTGTGTATGTACGTGTCAGTGGAATTGTAAACTTGAGCTATATCTAATCGGTTTGATTTACAGGCATGGAGTAGCTTTAGgtattattttatcaaaataaaaacaaccacGGTTGCAATGGagAACTTCCAGAATGTCCCAATTGACATCCAAACCAGTAAACTCTTAGACTGGTTGGTGGACCGAAGGCACTGCACACTGAAATGGCAAAGTGCAGTGATGACAATTAGAGAGAAAATCAATGCTGCCATTCAGGATATGCCAGAGAATGAGGAGATCAAACAACTACTGTCTggatcatACATTCACTATTTCCATTGCTTACGAataattgaaatactaaaagGAACAGAAGCGTcgagcaaaaatatttttggcagATATTCATCACAAAGAATGAAGGACTGGCAAGAGATAGTGTCCCTGTATGAAAAAGACAATGTCtatttagCTGAAGTGGCCAGTATATTGATACGTAGTGTAAGTTATGAAGGTCCTGCTCTAAAGAAGCAGGTGTCTAAAGCTCAGCAGCTGCAGCAGGAGTTGAGCAGAAGAGAACTGGAGTGTCAGAGCAGTGCCGCCAACATGAGGGAACGCTATTATGCTGCCTGTAAACAGTATGGCATACAGGGGGAAAATGTGGCAAGGGAGTTACAAGCACTCGTTAAGGACCTGCCTGTAGTTTTAGCAGAAACTGGTAAAAAAGCAGGCTGCCTGGATGAAGCTATAAAATTTTACGCATCCTTCATAAACTTTGTTAGTGACTGgtCTGAAGAAGTACTGCCCATTCTAAGATTTGTCcagaagaaacaaaatgcaACTGTATATGAGTGGAAGACAGGAAATGTGCCCGCAGTTATAGAAAGACCTGTGATGGAGGAAGCCCCACCTGATGTTGTCACAGAGGAGGCTATTGATTGGGGCGACCTCGGCAGCAAAGAGGTGAATTTTGGGATATCTGTTGAGGATGGTGTGGACTGGGGTATTAGTCTAGAGTCTGGCACAGAGGAAACCAGTGCTGGTGGTATTGACTGGGGAGACTCAGAATCTACACCTGTGGAAATTGAAATTGTGGATGTTGGAACAGACTGTCCTGATGGTGTTGCCAGAGGTGAAGATGCTCTTTCTCTTCTGGAAAACTCACAGACACGTGGCCAGTTCATTAATGAGCTGAAGGAGTTGGAAATGTTCCTGTGTCAGCGGCTCAGTGAAATGCGAGAAGAAGGTGACTTGGTGGCCATGAGTCAGTTCCAGCTCGCTCCCTCAGTGATCCAGGCCCAGACTCCCGAGCGTGTGGAGGCCATGCTGGCAGACGTGCGTGACCTGCTAAACGGGCTCACTTCAGTACGAATGCAGCACCTCTTCATGATCCAGGCATCACCACGctACGTGGAGCGTGTTTCAGAGTTACTGCGGCAGGAACTCAAGCAGGCTGATATCTTGGTGCTAAAGAGCAGAACACTTGTTGAAAATAGACAAGAAGCTCTAGAAGAACAGGCCAAGCTGGAGCCCCGCATTGATCTGCTGGCCGCTCGCACCAAGGAGCTCCAAAAACTGattgaaGCTGACATCTCCAAAAGATACAACAACCGGCCCATCAACCTCATGGGAGTTCATGTGTGACCAAAAGAGTATTTACATGCTGAACAGATGtatcatttcataaatatatttttcccatttaaattGGGATGGTAATTGTTTTTTGGTGATTCCTTTTTATCGTGGAATAAAACTGTTGCAATCACAGCGCTTTGAATATTCAAAGAAGGCTGTAAATAACTTGCGCTTACACAGCTGGCCTCATTAGTCTGAAGTGCTGAATTCAGTAAATGAACCATCTTAAGAGgccaatatttaaatatacaattgcTAACCCTAATTTTTGTAAGGAAAAACATGCGGCACTATCCATGGATAGGTTAtcaaaaactttaaaagaaacGGTCAGAAAAATTAACATTGTTGCAAACGTGCAATAACgtaataaactttattatttttttttttataaatatgaaattgcTGAATTGTCAACGTTTTAAAAACTGCATACTATCAAAGTGAATTGTACCTGAATGAATGAGTGACTTACGAgtttaaaacaaagtgttaccagaGTTGCATGCTACTGTGTGGCAGCTAAATATTAgatttgtataattaataaaatgaatgttacgTCAACAGA

Function

symbol description
cdk5rap3 Acts upstream of or within gastrulation; negative regulation of Wnt signaling pathway involved in dorsal/ventral axis specification; and regulation of mitotic cell cycle. Is expressed in several structures, including digestive system; hatching gland; mesoderm; nervous system; and pharyngeal arch. Orthologous to human CDK5RAP3 (CDK5 regulatory subunit associated protein 3).

NR:

description
CDK5 regulatory subunit-associated protein 3

GO:

id name namespace
GO:0070586 cell-cell adhesion involved in gastrulation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253058.1 True 2214 mRNA 0.42 14 12677700 12683617

Neighbor

gene id symbol gene type direction distance location
pnpo pnpo,LOC107743793,LOC107754092,LOC107563779,LOC107677888,LOC107565739 coding upstream 5761 12668222 ~ 12671939 (+)
tbx21 tbx21,LOC107565723,LOC107563776,LOC107677868 coding upstream 23975 12638139 ~ 12653725 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding upstream 70599 12567081 ~ 12607101 (+)
cdk5r1b cdk5r1b,cdk5r1,LOC107568950,LOC107565647,LOC107754098,LOC107675021,LOC107691215,LOC108426451 coding upstream 190517 12482052 ~ 12487183 (+)
LOC122355615 LOC107754112,LOC107689267,LOC107743783,LOC107566616,LOC107691214,LOC107568947 coding upstream 219845 12451994 ~ 12457855 (+)
nfe2l1b nfe2l1,nfe2l1b,LOC107565927,LOC107754105,LOC107743763,LOC107563780,LOC107677875 coding downstream 7901 12691518 ~ 12697239 (+)
phkg2 phkg2,LOC107743765,LOC107675026,LOC107563781,LOC107566018 coding downstream 25794 12709411 ~ 12714672 (+)
rnf40 LOC107754088,LOC107675023,LOC107743762,LOC107565773,LOC107677883,LOC107563784 coding downstream 33673 12717290 ~ 12730928 (+)
znf668 znf668,LOC107675019,LOC107754087,LOC107743759,LOC107563787,LOC108426467 coding downstream 62934 12746551 ~ 12750006 (+)
gjz1 si:rp71-1c10.10,LOC107675010,LOC107563802,LOC107754116,LOC107677869,LOC107743778 coding downstream 67009 12750626 ~ 12751732 (+)
G87753 NA non-coding upstream 118968 12556682 ~ 12558732 (+)
G87718 NA non-coding upstream 199791 12476805 ~ 12477909 (+)
G87669 NA non-coding upstream 437499 12239783 ~ 12240201 (+)
G87665 NA non-coding upstream 519192 12158246 ~ 12158508 (+)
G87664 NA non-coding upstream 519885 12157586 ~ 12157815 (+)
G87891 NA non-coding downstream 216455 12900072 ~ 12900399 (+)
G87934 NA non-coding downstream 512367 13195984 ~ 13197074 (+)
G87979 LOC107755539,LOC107566694,LOC107702418,LOC107708141,LOC107689963 non-coding downstream 665332 13348949 ~ 13383848 (+)
G87981 NA non-coding downstream 676697 13360314 ~ 13361050 (+)
G88010 NA non-coding downstream 745796 13429413 ~ 13431559 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 732065 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 793603 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 976045 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 2095155 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 2178002 10497425 ~ 10499698 (+)
G87817 NA other downstream 49147 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 76757 12760374 ~ 12762731 (+)
G88016 NA other downstream 758326 13441943 ~ 13444915 (+)
G88082 NA other downstream 912177 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 1172078 13855695 ~ 13864743 (+)

Expression


Co-expression Network