neurod2 (LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320)


Basic Information

Item Value
gene id neurod2
gene name LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6017991 ~ 6022156 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253059.1
agGAGAACAGAGTTAAGGTAACCCATCTAtgtaatataagtgtgtgtttgtgttcagttaTATGTTATAAGAAAATGAGCCAAGGCTAACGAATCTGAGCtagaaaaaataatagtattttttgaTAGACCCGAATACCATACAAGATTTAATTGAACCcctaataatcataaaaacagtcataataaaaaataggttTTAGCGTTGTGATTGCATTTTTTATCAAGAGCTTGAACCCTATAGCAACGTTCAAATTCCTATACCGTGTTTTAGCCCATGCTTGGTTACAGATTTAGGGAGGTTTCCAGCACCCACAAAGCATCGTAAGCCTAAATTCATTGTAGTTCTATTGTGTTCAGTAGGCTTACGACGTACTATGATGCGCTGTACTTAAtcatgcttttgggaaacgcagccCTTGTTGAGCAAGGTCACTATAATGGCATTGACTGGGTTTCTGGTTAAACGCCGTTATCAGGTACTTTACATAAgtcaaattcaaataaacaatgagACATGATTGAAAAATTCTTCATATATGTCcacattacacatacacacagagagattggaaacaacaaaacattttgaatgtgaatAGACGAACATGGGCtactgcatttacaaaaaacaacaaaaaaactataacgACAAATAACATGCACGcacacgacacacacatttgaaaTCGTTAATTAATACACAATTAAGTTGAATTTACATACAGTGTTTTCAAAGATTCCGATTCACCACATTCCCTCACCCCATGTGTATCTGAGAATATCTGTGTGCACTTGGGTGTAGTTTCTATGCAAGCGTGTACACTTTAGTGAGGTGCGTGTGCAGCAGCAGCGACAGATGGCGGGCTCCTCTTCCCTCGGGAAGGCAATCTCTACGAATGCGAGCGCGTGTCAATCACCCGCTCTCATGTGATGGCTCCTGCCAGTGACGTGCCCACCATATGGCCTGGCATCAGAGCAGTGTAGTAGGTAACTAGCGTGAAGATGGTGTAGACGAACGCGCCCTCACCCGTAGAGCACCATAAACTAGTGCCGCTGCAATGCTGACTAGATTATTCAACGAACATTCACTGCTTCCGGACATGCAGAAGTTCGGGGGCTGGGTGGATGACAGCGGGAGCGAGGACTCCAAAATCAAGGACGAGGAGCAGGAGCGCTGTCGCCTAGGCGACGAGGACTTGGATGAGGGCGATGTGAAAGACGGGAGCAGCCTGGCTCAGTCGGAAATTGCAGGGGAGGAGGACGATGATGAGGATGTTGATGAAGATGATTGTGGAGATGATGGGGACGAAGACAGGCCCAAAAAACGTGGGCCAAAAAAACGCAAAATGACACCGGCTAGGTTAGAGCGCTCGAAAGTTCGGCGCCAAAAAGCTAACGCCAGAGAGCGCACGCGCATGCACGATCTAAATTCAGCACTGGACAATCTACGCAAGGTTGTACCATGCTAttcaaaaactcaaaaactctCCAAAATTGAAACGTTAAGGTTGGCGAAGAACTACATTTGGGCGCTGTCAGAAATCCTGCGGAATGGGAAGAGACCGGACGTGGTTTCGTATGTACAGACACTGTGCAAAGGCCTCTCCCAACCCACGACCAATCTGGTGGCTGGGTGCCTCCAACTTAACTCAAGGAATTTTCTAACGGAACAATGTCAAGAAGGAGCGCGCTTTCACGTGCCTAACCCGTCGTTCTCCATGCATGCATATCCATACCAGTGTTCCCGTTTATCAAGCACACACTGTCAGTCAGGATCCAGTACACATAACCTTCGAAATCATTCTTTCTGTTCGGCCTATGAGGCTTTGTACACTGAAGGCACGTCCCCAGAATACAACAGCCCAGATTACGAGAGTCACCACAGCCCCCCGGTGTGTGTAAATGGTAACTTTGCTTTAAGACAACAGGAATCACTGTCACCGGACGCGGACAGAGGTTATCAATATTCTGTGCATTACACAAATCTGCATGGCCCACGTTCCTCCGCTGCTCATGGTCTTGCTTACGGCCCATCAGGAACTCGCAGCGCTCACTCAGAGAACCTTCCACCGTTTCATGATGTACACTTGCACCACGATCGGGCGCCTGCATACGAGGAACTCAACGCCTTTTTCCACAATTAGCAGTTTTTTCCGTGTtagttaaaaatagaaaaaagacaCGGAAAAGGAAAAGACTTTCCACGCAcaaaagattaattaatttagtagtaatgttttacattattgGACAATAAtcttgattttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataattacataatgaaCATTAATggacaaaatatgtataaaataactgaatgaCTAATTAACTGAATGAACAACTAATTCAACTGCTCAAACATTTTACGAAGTAGGAGTGTTATTTCTGATGGATTCTAATGTTGGAAAAACAGtgaatatattatgtaataacgCCAAATTGTTTAATGAAGTTtcatgatcaaataaataaagacgcATAATATTCCAGAA

Function

NR:

description
neurogenic differentiation factor 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09078 NEUROD2; neurogenic differentiation factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253059.1 True 2563 mRNA 0.42 3 6017991 6022156

Neighbor

gene id symbol gene type direction distance location
mylpfb mylpfb,LOC107571443,LOC107674915,LOC108443170,LOC102793118,LOC101482131,LOC108274226,LOC102196412 coding downstream 139770 5875085 ~ 5878221 (-)
pkmyt1 pkmyt1 coding downstream 255380 5748277 ~ 5762611 (-)
sult1st6 sult1st6,LOC107674799,LOC107708285,LOC107574469 coding downstream 271461 5736592 ~ 5746530 (-)
avl9 avl9 coding downstream 284703 5703313 ~ 5733288 (-)
buc2l NA coding downstream 327602 5685526 ~ 5690389 (-)
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding upstream 175326 6197482 ~ 6280348 (-)
hexim1 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 coding upstream 1149240 7171396 ~ 7173368 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding upstream 1152462 7174618 ~ 7182834 (-)
kcnj19b si:dkey-100n10.2,LOC107584158,LOC107758432,LOC107661094,LOC108424892,LOC107727700,LOC108273498 coding upstream 1337227 7359383 ~ 7365015 (-)
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding upstream 1482560 7504716 ~ 7521406 (-)
G85929 NA non-coding downstream 29652 5987861 ~ 5988339 (-)
LOC122355182 NA non-coding downstream 36919 5972473 ~ 5981072 (-)
G85923 NA non-coding downstream 59464 5958295 ~ 5958527 (-)
G85922 NA non-coding downstream 60212 5957578 ~ 5957779 (-)
G85893 NA non-coding downstream 179034 5838559 ~ 5838957 (-)
G85934 NA non-coding upstream 7577 6029733 ~ 6030024 (-)
G85935 NA non-coding upstream 11325 6033481 ~ 6033769 (-)
G85939 NA non-coding upstream 28044 6050200 ~ 6050650 (-)
G85966 NA non-coding upstream 74904 6097060 ~ 6097867 (-)
G86017 NA non-coding upstream 416744 6438900 ~ 6439334 (-)
G85930 LOC107711793,LOC107755027 other downstream 5880 5990913 ~ 6012111 (-)
G85925 NA other downstream 30211 5984989 ~ 5987780 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 591480 5423084 ~ 5426511 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other downstream 621079 5322478 ~ 5396912 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 1601094 4412573 ~ 4416897 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 29012 6051168 ~ 6078068 (-)
G86049 LOC101886504,LOC101886427 other upstream 648163 6670319 ~ 6671247 (-)
G86108 NA other upstream 1081724 7103880 ~ 7104218 (-)
G86203 NA other upstream 1366080 7388236 ~ 7388910 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 2312248 8334404 ~ 8359992 (-)

Expression


Co-expression Network