si:ch211-225b10.3 (LOC107702429,LOC107566028,LOC107755542,LOC107707918)


Basic Information

Item Value
gene id si:ch211-225b10.3
gene name LOC107702429,LOC107566028,LOC107755542,LOC107707918
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13334226 ~ 13339065 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253067.1
CAacttcctgcagagtttagctcaagCTCTGCTACAGTAAGGTTACACCCGTCTGTCATTTTCAAGCGAACCCAAAGACCTtcattagctggttcaggtgcgTTTGATTAGAGCTTCAGACTGAAACTGCCACAAAAATTCCAGTGAGTTCTGGACAAAGCATCTACAGattcttgagaaaaaaaagttacaacaAAAAGAAACTGATTTGTGCTGCATCTGCATGGGGTTTGTTTAACTGGAAAAACCAGCTGTTGCAGAACGTGGAAGTGGTTGCAAAACAGTGCATTTGGCACTAAATGGACGGTCCTGTTGAGAACTCTTCAAACTTTCATCATAAAAAGAGTTTTGAAACAGGACTGAGATAAATATACAGACGTCCATTTAACAATGAACAAACTGAGAAGAAGAAGTACTATCAACTTAGTGAAAGAACTGGATGCCTTTCCTAAAGTTCCAGAGAGCTATGTTGAAACGTCAGCTTTTGGAGGGACAGTGTCACTGATTGTATTCATCCTCATGGCATTTCTGACCATCTCCGAGTTGTTTGTGTACCAGGACTCAtggatgaaatatgaatatgaagtaGACACAGATTTTACTAGtaaattgaaGATAAAAATTGACATCACAGTTGCTATGAAATGTACAAGAGTGGGTGCAGATGTGTTGGATGTTGCTGGGGCTGTCATTGCATCAAAGGAACTTAAATATGATGATgtaagCTTTGAGCCCtctccaaagaaaaaaatgtggtaTCAGATATTACAGCAGATTCAAAACAGACTGAGGGAAGAGCATTCACTTCAAGATGTACTCTTTAAATCAGCGCTGAACGGATACTTTTCTGATCCAGTTCCacaaAATGGTTCTACATCCAATTTCCAGAATGCATGTAGAATACATGGGCAAATATATGTCAATAAAGTGGCGGGAAATTTCCATATCATATTGGGCAAACCAATTGATACTATCAGAGGTCATGCCCATTTTGcttcattaatcaaaaatgaagCTGCTCTTAACTTCTCACATCGAATAGATTATTTATCTTTTGGAAACGATGCTCCTGGACACATCAATCCCCTTGACGGCACCGAAAAAGTTACATTAGAAcAAAATATGCTGTTTCAGTATTTTATCACAGTTGTGCCCACCAAGCTGCACACATCAGGTGTTTCAGTGAACATGCACCAGTTTTCTGTTACAGAACAGGAGCGTCTTATAAGCAATGAGAAAGGCAGTCATGGTATATCTGGgatctttattaaatataaactgaGTCCATTAATGGTGAAGGTGACAGAGGAGCACATGCctttctctgtgtttcttgTGAGACTGTGTGGCATCATTGGAGGAATCTTTTCTACTACAGGTCTGCTGCACAGATTGATCGGGTATTTTGTTGACATTGcctgctgtcactttaaaccAGATGCAGATCAATCCCAGGAGgtCATCCCTGATTAGGACCCCTGGTAcgtttacatgtatttattttgcagagACATAAAGCGACAAGTGGCATAAAAAGGTCCTGGACAGTAGCCTAGAAACcaacatattattttgtttacaacTGCAATTACATATAACATACCATTTGCAATGCTTCATTTGATTGTAGAGAACAAttggaaaaatacttttttgctgTCAGGTTGCAGtcattcgtttttattttttattttatcaatgaTAAAGTGgagagtaaataataaataaaacttgtgacaataattaaacattttaata

Function

NR:

description
PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 2-like

GO: NA

KEGG:

id description
K20366 ERGIC2, ERV41; endoplasmic reticulum-Golgi intermediate compartment protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253067.1 True 1758 mRNA 0.38 15 13334226 13339065

Neighbor

gene id symbol gene type direction distance location
afap1l2 afap1l2,LOC107755545,LOC107702445,LOC107689955,LOC107707932 coding upstream 26718 13275233 ~ 13307508 (+)
ablim1b ablim1b,ablim1,LOC107565789,LOC107689952,LOC107581547,LOC107755543 coding upstream 65605 13203782 ~ 13268621 (+)
gfra1b gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107689950,LOC107707958 coding upstream 226915 13082173 ~ 13107311 (+)
bms1 bms1,LOC107675025,LOC107689949,LOC107566656 coding upstream 456958 12860134 ~ 12877268 (+)
mxtx2 mxtx2,LOC107566646,LOC107675004,LOC107754102,LOC107722443,LOC107563796 coding upstream 474698 12858248 ~ 12859528 (+)
ccdc186 ccdc186,LOC107566113,LOC107581550 coding downstream 5917 13344982 ~ 13367920 (+)
dclre1a dclre1a,LOC107755538,LOC107702450,LOC107566699,LOC107708134 coding downstream 59533 13398598 ~ 13405786 (+)
si:ch211-28p3.4 si:ch211-28p3.4,LOC107702431,LOC107566824,LOC107755441 coding downstream 94770 13433835 ~ 13437027 (+)
LOC122355710 LOC107755535,LOC107702452,LOC107684034,LOC107707842 coding downstream 107368 13446433 ~ 13462669 (+)
thbs2b thbs2b,LOC107755534,LOC107702453,LOC107566173,LOC107581559,LOC107707836,LOC107684035 coding downstream 142993 13482058 ~ 13497837 (+)
G87934 NA non-coding upstream 137152 13195984 ~ 13197074 (+)
G87891 NA non-coding upstream 433827 12900072 ~ 12900399 (+)
G87753 NA non-coding upstream 775494 12556682 ~ 12558732 (+)
G87718 NA non-coding upstream 856317 12476805 ~ 12477909 (+)
G87669 NA non-coding upstream 1094025 12239783 ~ 12240201 (+)
G87979 LOC107755539,LOC107566694,LOC107702418,LOC107708141,LOC107689963 non-coding downstream 9884 13348949 ~ 13383848 (+)
G87981 NA non-coding downstream 21249 13360314 ~ 13361050 (+)
G88010 NA non-coding downstream 90348 13429413 ~ 13431559 (+)
G88062 NA non-coding downstream 197101 13536166 ~ 13538088 (+)
G88063 NA non-coding downstream 200724 13539789 ~ 13540023 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other upstream 571495 12760374 ~ 12762731 (+)
G87817 NA other upstream 596577 12732764 ~ 12737649 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 1388591 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 1450129 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 1632571 11694844 ~ 11701655 (+)
G88016 NA other downstream 102878 13441943 ~ 13444915 (+)
G88082 NA other downstream 256729 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 516630 13855695 ~ 13864743 (+)
LOC122355339 LOC107702424 other downstream 555296 13894361 ~ 13904627 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other downstream 639106 13978171 ~ 13993044 (+)

Expression


Co-expression Network