hoxb1b (hoxb1b,LOC107669476,LOC107552742,LOC107706871)


Basic Information

Item Value
gene id hoxb1b
gene name hoxb1b,LOC107669476,LOC107552742,LOC107706871
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11879440 ~ 11897570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253073.1
GTCAGGGCGCAGTCAGTAGCACCTCTGtcctttatgttttttttttacgttttgttAAAGCGGAGGGAAAGAAAAAATTCTCCCGAGCGGTGCGTTAATATGGATGGGAAGCCCGACGTCACGCCAGCGCGAGGCGTCTTTAGATTTTCGCATCAGCTAAGAGTGCAAGGGTCAAAATTAACTCAGGACCTTAGTTCGTTCTCGTCTAATTTGTCAGGTTTTAGCTCTGCCTGCCTTGCCGGCACGCGCAACGACGCGACGCGGGAACCTGGTTAATCGACGAATCTGCGCGATTGTTTTGGATCGTTCCGGTGAAGCGATGATGGACGGGGAAGGAAAAGcaaCAAGTGTATCCCAGTAAGGCCTTTGAGGACACGTTTTCCAATTTCCATTCAGGCTGCAGACAATCAGAAGAAGGGACATgtcgagagagaaaaaaagGTCATCTTCCAGCGGGCCTCCGGAACCATACTGTCACATGACACGAGAGGCCAGAGTTTTGCTAAACCCCCAGAAAGCACCGACATAACCGATGAAAGCCGTCCAGAAAATGCAGATAACGAACAACAACAAGAACGCGTCTCGCGACGTAGCGGGATTATTTGTAACGCAGCCGTTATGCATTTGAACATAATGACAAAATCCGTCATGCAGAACACATTGGGTCAGCGACCGCAAAAGACCGGCTTGTACAGTGAAACGGAATACTGAACGAGAAAAAGAGGGGGAAACGTTCACCATCTTCAATCAAGACGGCGCTAACTCATCGGTGCTTCTTTCTGCAAAGTACAGGAGGTGCCAGAAAGAATCAACAAGTTTACTGCTACTGTACTCTGTCACCTAGCCACATATTCTTGGATGACATTATTCAAGCAAACCCCACAAAGAGGAGCGCTGCTTCACGCGCAGGAGCGACAAGAAAGCCCCGCTGGGATTCATTGCCTCGAAAAGAGCACGCGCCGCTTCATACGAGCGAGCTTCCACTGCGCGTGCTGGCGCGGATCTGCGGAAATGGCCCGTTTACTGCTGACACGCACTGGGAAGAACGTACAAACCCGGTTTCAGAACCGGAGGGTGACACAAACACGACCGTAGGCTGAAAAAGAAAGTCTCTCTCGGACCGTTTCTGATCGACagcccaccaccaccaccaccaccgtCTTGAGTGAGGCTCCCAGAGATTTATTTACGCGCGTGGGATCTTACAGCGCCGCGGGTAAAACGTCCTTCCGCCAATATGACAGGAGAAGTAGGCTATATCTGGGTACGGTTATCCAGTATGCATTAATGACGGTCCCTGTCTCTCCTGGACGACTTACATAAAACTATTCTGTCGCGTTCCCCAGAGCGTATAACCAATAATAAAGTCccctttaaatgattaaatgtcaCTTTCGTGGAGGGCAATATTTCCAAAACCAATATTTAATGGCAAATAAGCATTGTAGTAACGTACCTGACCGATTTAATAACGTTACtcttaataaatcaaattatttggTGAAAATAATAGTCCAGTGAATCTGACATCTCGCGCGATGTAGTCTAGCGTGTTTATTTAGCTGTCGCTTCTCGCAAAggttaattaaaatgatctaaTCAGTTTATCTCTTACCCCTGTTAATAGTTTTCTGTAGGCTGTTTGAATGGAGTATGTcttctgtattaaaaaaaatatggtttaaGGTTTAtctaaaaagtataatataagaATAGGTAagaatcaaaatcaaaaacacGTTTTATAACCCTGCGTGGGAGCAAAATATTATAGCGCCACACAAACCCATTTTAATGGCAGATCATATCTAAGCACTATCTTGAAAAGCATGTTGGCCCTCTATCTCGAGAGAACACCAATCTTAGCAAGCCATTGGTGTATATATGGGTTCATTCATTCCAGTTCAATTAGGAACTTAGATTTGATTGCAAAAGAAACTCTttaggaaaaaattaaaaacttaaaggCTGACCAGTCTACTTTAAGTCAGGGTTGGAAGTTTTGAGCCTGTTTATTTATAGCTTGCTACAACTCCAGTTGTCCTCGCCGTCACAAGGCTGCGAtataaatgtgctatataaCTCGGGCGCTCGCTTTAATTCACATTAGACCTACATTGCAAGTTTATCAGATTGATGGGTGGATTCGATTGATGTGTTTGTCATGTAAATACGAATCGTTTGATGGACACCTGCAACGCCCAAAGTGCTACCGCAGGTCGCACACTATTGGTGCAAAATTAGTCACATGATCTGTCACTAAACTGATATGAGCTCGGATAGAACTTTGTGTGGTTTGACATACTGCTTAGAGGTTGTAGGGGCACCGGGACCACACATCGGCCTGTATTGACCCTGCTTAATCAATTTTGCTTGGTCGGTCAACAATGAATTCCTATTTAGATTATACGATTTATAACCGCGGCGCTAACACTTACAGTTCGAAGGTTGGGTGTTTTTCTATGGAGCAGGAATACTTGCCAAGTGCTTGTGCAAGTACAAATAGTTACGTTCCCGAGGGACGGACGGTCGGAGGAAACGCTTTTACGCCGGCGACGCACGAAACCCATGGCACAACTTACGCACCGCTTCATTCGCAGCAATACCACATGAACATGGACATGGGGAAAACCGGGCACTCCAATTTTTGCAAGCAACCCCGACCTCCCCACTCGGACTATGGGCATCAACATGTTCTCACGCAAGCAGATGACCACATGCGTCTTCAGTCCCCTGCGTTTTCCGTCGTGAACATGGGAGCAGGCATCGGAACGTACAGTGAATCTAACTGCAGGCCTGGCTCGGTCTCTGCGAGCCATTACCAGTCCTATCCTTATGGAGAGCACGAACCGAACGGCTATGGTTCGTTTAGCAAGTACCAGGTCTCCCCCGACAGTGACAGCGACTCCAAAACGAACATCAAGCAAGCGCCAACGTTTGACTGGATGAAAGTCAAGAGAAACCCTCCTAAAACAATTAAAGTCGACGAATATGGGATGCACGGCCAGCAGAATATAATACGCACCAATTTCACCACCAAGCAGCTCACCGAACTCGAGAAGGAGTTCCACTTCAACAAGTACCTGACCAGAGCGCGCAGAGTGGAAGTGGCCGCCACCCTCGAACTGAACGAAACGCAGGTTAAAATCTGGTTTCAGAACCGCAGGATGAAACAGAAGAAGCGGGAGAAGGAAGGAACGGCCCCGGTGATCAAACGTGCCACTTTTTGCTCTTCTGGTCAAAGCGCAGACAACTCGAACAGCTCCTCATCCCCTGGAGCTTCGCCTACCTCAGACTCTTCCACTGCTGTTTGATGATAACGTGCCTTTGTGGCAAACGAACTCATGTTTCATCATCGTGATGTGGAGAACTATCTAACTTATTCTGCTGTCTCAGACAAAGCATTAAATACGCGCTAAAGTGTGCATGCGTGTTTATATATAACGCACAGTAAATAATTTTGCTGCACAGAGCTACTGTATTAATGGTTCGAAATGCATTAACAGGGTATATGCTTATTCCAAATCAAgaggtttcattttttttcctgtcatcGGGTCGacatcctttttgtttttgcactaCTGATTCATTCCTCTGTTGGAAGAGTAACAAAAATGTAGTAAAGACTGACACGTTtatgtatttagaaaataatctGGCCTGTGATGttttga

Function

symbol description
hoxb1b Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including hindbrain development; neural keel formation; and regulation of histone modification. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; mesoderm; neural keel; neural plate; and presumptive neural plate. Orthologous to human HOXB1 (homeobox B1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0071599 otic vesicle development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09301 HOX_1; homeobox protein HoxA/B/D1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253073.1 True 3677 mRNA 0.46 5 11879440 11897570

Neighbor

gene id symbol gene type direction distance location
hoxb8b hoxb8b,LOC107669483,LOC107706868,LOC107552737,LOC107727302,LOC107666913 coding upstream 3761 11873649 ~ 11875679 (+)
ttll6 ttll6,LOC107582749,LOC107666932,LOC107727303,LOC107669465,LOC107706894,LOC107552736 coding upstream 7666 11863622 ~ 11871774 (+)
LOC122355327 LOC107669484,LOC107666914,LOC107727294,LOC107552729,LOC107706895 coding upstream 17868 11835273 ~ 11861572 (+)
fbrs LOC107552766,LOC107706892,LOC107666918 coding upstream 44309 11823839 ~ 11835131 (+)
msl1b msl1b,LOC107706890,LOC107552764,LOC107669485,LOC107582751,LOC107666930,LOC107727293 coding upstream 59014 11814665 ~ 11820426 (+)
skap1 skap1,LOC107666922,LOC107727295,LOC107669469 coding downstream 7512 11905082 ~ 11932134 (+)
tmem106a LOC107706900,LOC107552767,LOC107669487,LOC107666933,LOC107727317 coding downstream 48501 11946071 ~ 11949632 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107582746,LOC107727318 coding downstream 54281 11951851 ~ 11953983 (+)
dusp3a dusp3a,dusp3,LOC107669488,LOC107552769,LOC107666929,LOC107582744 coding downstream 74125 11971695 ~ 11981994 (+)
sost LOC107552770,LOC107706903,LOC107582741,LOC107743777 coding downstream 91711 11989281 ~ 11993628 (+)
G87337 chmp2a,LOC106589279 non-coding upstream 56118 11822063 ~ 11823322 (+)
G87343 NA non-coding upstream 75813 11803287 ~ 11803627 (+)
G87341 NA non-coding upstream 78813 11800356 ~ 11800627 (+)
G87331 NA non-coding upstream 135035 11741981 ~ 11744405 (+)
G87285 NA non-coding upstream 382448 11484193 ~ 11496992 (+)
G87617 NA non-coding downstream 99720 11997290 ~ 11997512 (+)
G87621 NA non-coding downstream 169833 12067403 ~ 12067629 (+)
G87644 NA non-coding downstream 251853 12149423 ~ 12149637 (+)
LOC122355133 NA non-coding downstream 253582 12151152 ~ 12156922 (+)
G87664 NA non-coding downstream 260016 12157586 ~ 12157815 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 177785 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1296895 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1379742 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 1383163 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1980439 9883033 ~ 9899001 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 39271 11936841 ~ 11945635 (+)
G87817 NA other downstream 835194 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 862804 12760374 ~ 12762731 (+)
G88016 NA other downstream 1544373 13441943 ~ 13444915 (+)
G88082 NA other downstream 1698224 13595794 ~ 13596348 (+)

Expression


Co-expression Network